Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G22750

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034053: modulation by symbiont of host defense-related programmed cell death0.00E+00
2GO:0045740: positive regulation of DNA replication0.00E+00
3GO:0006720: isoprenoid metabolic process0.00E+00
4GO:0048870: cell motility0.00E+00
5GO:0032780: negative regulation of ATPase activity0.00E+00
6GO:0051776: detection of redox state0.00E+00
7GO:0009240: isopentenyl diphosphate biosynthetic process0.00E+00
8GO:0071284: cellular response to lead ion0.00E+00
9GO:0043482: cellular pigment accumulation0.00E+00
10GO:0045747: positive regulation of Notch signaling pathway0.00E+00
11GO:0046292: formaldehyde metabolic process0.00E+00
12GO:0032928: regulation of superoxide anion generation0.00E+00
13GO:0016093: polyprenol metabolic process0.00E+00
14GO:0006069: ethanol oxidation0.00E+00
15GO:0036172: thiamine salvage0.00E+00
16GO:2000786: positive regulation of autophagosome assembly0.00E+00
17GO:0090549: response to carbon starvation0.00E+00
18GO:0006120: mitochondrial electron transport, NADH to ubiquinone1.05E-07
19GO:0055114: oxidation-reduction process2.53E-06
20GO:0009853: photorespiration3.47E-06
21GO:0050992: dimethylallyl diphosphate biosynthetic process9.54E-06
22GO:0019509: L-methionine salvage from methylthioadenosine9.96E-06
23GO:0006914: autophagy1.36E-04
24GO:0006555: methionine metabolic process2.68E-04
25GO:0009117: nucleotide metabolic process2.68E-04
26GO:0006012: galactose metabolic process4.50E-04
27GO:0006567: threonine catabolic process4.64E-04
28GO:0016487: farnesol metabolic process4.64E-04
29GO:0016031: tRNA import into mitochondrion4.64E-04
30GO:0043407: negative regulation of MAP kinase activity4.64E-04
31GO:0031468: nuclear envelope reassembly4.64E-04
32GO:0015991: ATP hydrolysis coupled proton transport6.16E-04
33GO:0016122: xanthophyll metabolic process1.00E-03
34GO:0045454: cell redox homeostasis1.00E-03
35GO:0007163: establishment or maintenance of cell polarity1.00E-03
36GO:0006432: phenylalanyl-tRNA aminoacylation1.00E-03
37GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.00E-03
38GO:0051252: regulation of RNA metabolic process1.00E-03
39GO:0019441: tryptophan catabolic process to kynurenine1.00E-03
40GO:2000071: regulation of defense response by callose deposition1.00E-03
41GO:0006501: C-terminal protein lipidation1.00E-03
42GO:0006995: cellular response to nitrogen starvation1.15E-03
43GO:0015031: protein transport1.47E-03
44GO:0006760: folic acid-containing compound metabolic process1.63E-03
45GO:0010476: gibberellin mediated signaling pathway1.63E-03
46GO:0010325: raffinose family oligosaccharide biosynthetic process1.63E-03
47GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.63E-03
48GO:0034051: negative regulation of plant-type hypersensitive response1.63E-03
49GO:0008333: endosome to lysosome transport1.63E-03
50GO:0043617: cellular response to sucrose starvation1.63E-03
51GO:0009150: purine ribonucleotide metabolic process1.63E-03
52GO:0046417: chorismate metabolic process1.63E-03
53GO:0015940: pantothenate biosynthetic process1.63E-03
54GO:0071492: cellular response to UV-A1.63E-03
55GO:0006107: oxaloacetate metabolic process2.37E-03
56GO:0009647: skotomorphogenesis2.37E-03
57GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.37E-03
58GO:1901332: negative regulation of lateral root development2.37E-03
59GO:0009399: nitrogen fixation2.37E-03
60GO:0009963: positive regulation of flavonoid biosynthetic process2.37E-03
61GO:0006516: glycoprotein catabolic process2.37E-03
62GO:0048527: lateral root development2.38E-03
63GO:0006487: protein N-linked glycosylation2.70E-03
64GO:0006099: tricarboxylic acid cycle2.83E-03
65GO:0034599: cellular response to oxidative stress2.83E-03
66GO:0008299: isoprenoid biosynthetic process2.99E-03
67GO:0044804: nucleophagy3.18E-03
68GO:0006542: glutamine biosynthetic process3.18E-03
69GO:0070534: protein K63-linked ubiquitination3.18E-03
70GO:0010109: regulation of photosynthesis3.18E-03
71GO:0015976: carbon utilization3.18E-03
72GO:0006545: glycine biosynthetic process3.18E-03
73GO:0071486: cellular response to high light intensity3.18E-03
74GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.18E-03
75GO:0009765: photosynthesis, light harvesting3.18E-03
76GO:0071249: cellular response to nitrate3.18E-03
77GO:0006221: pyrimidine nucleotide biosynthetic process3.18E-03
78GO:0042594: response to starvation3.18E-03
79GO:0006625: protein targeting to peroxisome3.18E-03
80GO:0009649: entrainment of circadian clock3.18E-03
81GO:0000003: reproduction3.18E-03
82GO:0034613: cellular protein localization3.18E-03
83GO:0015992: proton transport3.28E-03
84GO:0061077: chaperone-mediated protein folding3.28E-03
85GO:0016226: iron-sulfur cluster assembly3.59E-03
86GO:0009229: thiamine diphosphate biosynthetic process4.08E-03
87GO:0018344: protein geranylgeranylation4.08E-03
88GO:0000422: mitophagy4.08E-03
89GO:0030041: actin filament polymerization4.08E-03
90GO:0010117: photoprotection4.08E-03
91GO:0046283: anthocyanin-containing compound metabolic process4.08E-03
92GO:0042147: retrograde transport, endosome to Golgi4.62E-03
93GO:0006301: postreplication repair5.05E-03
94GO:0016070: RNA metabolic process5.05E-03
95GO:0000045: autophagosome assembly5.05E-03
96GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity5.05E-03
97GO:0031053: primary miRNA processing5.05E-03
98GO:0033365: protein localization to organelle5.05E-03
99GO:0007035: vacuolar acidification5.05E-03
100GO:0009228: thiamine biosynthetic process5.05E-03
101GO:0035556: intracellular signal transduction5.26E-03
102GO:0006520: cellular amino acid metabolic process5.39E-03
103GO:0006662: glycerol ether metabolic process5.39E-03
104GO:0048444: floral organ morphogenesis6.09E-03
105GO:1901001: negative regulation of response to salt stress6.09E-03
106GO:0050790: regulation of catalytic activity7.20E-03
107GO:0007050: cell cycle arrest7.20E-03
108GO:0022904: respiratory electron transport chain7.20E-03
109GO:0009396: folic acid-containing compound biosynthetic process7.20E-03
110GO:0000082: G1/S transition of mitotic cell cycle7.20E-03
111GO:0010090: trichome morphogenesis7.60E-03
112GO:0016569: covalent chromatin modification7.87E-03
113GO:0045010: actin nucleation8.39E-03
114GO:0045292: mRNA cis splicing, via spliceosome8.39E-03
115GO:0009787: regulation of abscisic acid-activated signaling pathway8.39E-03
116GO:0006506: GPI anchor biosynthetic process8.39E-03
117GO:0000028: ribosomal small subunit assembly8.39E-03
118GO:0010286: heat acclimation8.60E-03
119GO:0010099: regulation of photomorphogenesis9.63E-03
120GO:0022900: electron transport chain9.63E-03
121GO:0009056: catabolic process1.09E-02
122GO:0000902: cell morphogenesis1.09E-02
123GO:0098656: anion transmembrane transport1.09E-02
124GO:0046685: response to arsenic-containing substance1.09E-02
125GO:0046916: cellular transition metal ion homeostasis1.09E-02
126GO:0006754: ATP biosynthetic process1.09E-02
127GO:0015995: chlorophyll biosynthetic process1.14E-02
128GO:0035999: tetrahydrofolate interconversion1.23E-02
129GO:0010311: lateral root formation1.33E-02
130GO:0009688: abscisic acid biosynthetic process1.37E-02
131GO:0045036: protein targeting to chloroplast1.37E-02
132GO:0009641: shade avoidance1.37E-02
133GO:0000103: sulfate assimilation1.37E-02
134GO:0006886: intracellular protein transport1.47E-02
135GO:0010015: root morphogenesis1.52E-02
136GO:0009073: aromatic amino acid family biosynthetic process1.52E-02
137GO:0009682: induced systemic resistance1.52E-02
138GO:0006790: sulfur compound metabolic process1.68E-02
139GO:0010152: pollen maturation1.68E-02
140GO:0016925: protein sumoylation1.68E-02
141GO:0009651: response to salt stress1.72E-02
142GO:0006829: zinc II ion transport1.84E-02
143GO:0030001: metal ion transport1.84E-02
144GO:0010102: lateral root morphogenesis1.84E-02
145GO:0006108: malate metabolic process1.84E-02
146GO:0006807: nitrogen compound metabolic process1.84E-02
147GO:0009691: cytokinin biosynthetic process1.84E-02
148GO:0006979: response to oxidative stress1.89E-02
149GO:0048440: carpel development2.00E-02
150GO:0002237: response to molecule of bacterial origin2.00E-02
151GO:0007031: peroxisome organization2.17E-02
152GO:0007030: Golgi organization2.17E-02
153GO:0010039: response to iron ion2.17E-02
154GO:0008152: metabolic process2.22E-02
155GO:0000162: tryptophan biosynthetic process2.35E-02
156GO:0034976: response to endoplasmic reticulum stress2.35E-02
157GO:0009116: nucleoside metabolic process2.53E-02
158GO:0006825: copper ion transport2.71E-02
159GO:0051302: regulation of cell division2.71E-02
160GO:0006486: protein glycosylation2.80E-02
161GO:0009585: red, far-red light phototransduction2.80E-02
162GO:0010431: seed maturation2.90E-02
163GO:0051603: proteolysis involved in cellular protein catabolic process2.90E-02
164GO:0010224: response to UV-B2.90E-02
165GO:0007005: mitochondrion organization3.09E-02
166GO:0019748: secondary metabolic process3.09E-02
167GO:2000022: regulation of jasmonic acid mediated signaling pathway3.09E-02
168GO:0001944: vasculature development3.29E-02
169GO:0048443: stamen development3.49E-02
170GO:0009620: response to fungus3.64E-02
171GO:0010118: stomatal movement3.91E-02
172GO:0080022: primary root development3.91E-02
173GO:0061025: membrane fusion4.34E-02
174GO:0007059: chromosome segregation4.34E-02
175GO:0009646: response to absence of light4.34E-02
176GO:0015986: ATP synthesis coupled proton transport4.34E-02
177GO:0008654: phospholipid biosynthetic process4.56E-02
178GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.78E-02
179GO:0002229: defense response to oomycetes4.78E-02
180GO:0010193: response to ozone4.78E-02
RankGO TermAdjusted P value
1GO:0042030: ATPase inhibitor activity0.00E+00
2GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
3GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity0.00E+00
4GO:0052670: geraniol kinase activity0.00E+00
5GO:0052668: farnesol kinase activity0.00E+00
6GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
7GO:0003826: alpha-ketoacid dehydrogenase activity0.00E+00
8GO:0004452: isopentenyl-diphosphate delta-isomerase activity0.00E+00
9GO:0050152: omega-amidase activity0.00E+00
10GO:0052671: geranylgeraniol kinase activity0.00E+00
11GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
12GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
13GO:0004147: dihydrolipoamide branched chain acyltransferase activity0.00E+00
14GO:0004780: sulfate adenylyltransferase (ADP) activity0.00E+00
15GO:0008137: NADH dehydrogenase (ubiquinone) activity5.70E-06
16GO:0004034: aldose 1-epimerase activity2.33E-05
17GO:0016787: hydrolase activity2.54E-05
18GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity3.26E-05
19GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity7.03E-05
20GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.23E-04
21GO:0005528: FK506 binding2.73E-04
22GO:0030941: chloroplast targeting sequence binding4.64E-04
23GO:0008930: methylthioadenosine nucleosidase activity4.64E-04
24GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity4.64E-04
25GO:0033549: MAP kinase phosphatase activity4.64E-04
26GO:0004560: alpha-L-fucosidase activity4.64E-04
27GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.64E-04
28GO:0016776: phosphotransferase activity, phosphate group as acceptor4.64E-04
29GO:0004793: threonine aldolase activity4.64E-04
30GO:0004048: anthranilate phosphoribosyltransferase activity4.64E-04
31GO:0008732: L-allo-threonine aldolase activity4.64E-04
32GO:0030611: arsenate reductase activity4.64E-04
33GO:0008782: adenosylhomocysteine nucleosidase activity4.64E-04
34GO:0035064: methylated histone binding5.75E-04
35GO:0015078: hydrogen ion transmembrane transporter activity7.02E-04
36GO:0016853: isomerase activity7.44E-04
37GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.04E-04
38GO:0047617: acyl-CoA hydrolase activity9.90E-04
39GO:0010331: gibberellin binding1.00E-03
40GO:0004839: ubiquitin activating enzyme activity1.00E-03
41GO:0008428: ribonuclease inhibitor activity1.00E-03
42GO:0004106: chorismate mutase activity1.00E-03
43GO:0004061: arylformamidase activity1.00E-03
44GO:0019172: glyoxalase III activity1.00E-03
45GO:0004826: phenylalanine-tRNA ligase activity1.00E-03
46GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity1.00E-03
47GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.04E-03
48GO:0008794: arsenate reductase (glutaredoxin) activity1.33E-03
49GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity1.63E-03
50GO:0005047: signal recognition particle binding1.63E-03
51GO:0032403: protein complex binding1.63E-03
52GO:0004848: ureidoglycolate hydrolase activity1.63E-03
53GO:0004663: Rab geranylgeranyltransferase activity1.63E-03
54GO:0004089: carbonate dehydratase activity1.73E-03
55GO:0000339: RNA cap binding2.37E-03
56GO:0047627: adenylylsulfatase activity2.37E-03
57GO:0000254: C-4 methylsterol oxidase activity2.37E-03
58GO:0035529: NADH pyrophosphatase activity2.37E-03
59GO:0016656: monodehydroascorbate reductase (NADH) activity2.37E-03
60GO:0050897: cobalt ion binding2.38E-03
61GO:0004725: protein tyrosine phosphatase activity2.44E-03
62GO:0010011: auxin binding3.18E-03
63GO:0098599: palmitoyl hydrolase activity3.18E-03
64GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.18E-03
65GO:0004576: oligosaccharyl transferase activity3.18E-03
66GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances3.18E-03
67GO:0019776: Atg8 ligase activity3.18E-03
68GO:0004356: glutamate-ammonia ligase activity4.08E-03
69GO:0016407: acetyltransferase activity4.08E-03
70GO:0008948: oxaloacetate decarboxylase activity4.08E-03
71GO:0016651: oxidoreductase activity, acting on NAD(P)H4.08E-03
72GO:0005496: steroid binding4.08E-03
73GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.08E-03
74GO:0031386: protein tag4.08E-03
75GO:0047134: protein-disulfide reductase activity4.62E-03
76GO:0004605: phosphatidate cytidylyltransferase activity5.05E-03
77GO:0008474: palmitoyl-(protein) hydrolase activity5.05E-03
78GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity5.05E-03
79GO:0051117: ATPase binding5.05E-03
80GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity5.05E-03
81GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity5.05E-03
82GO:0046933: proton-transporting ATP synthase activity, rotational mechanism5.39E-03
83GO:0004791: thioredoxin-disulfide reductase activity5.80E-03
84GO:0051920: peroxiredoxin activity6.09E-03
85GO:0070300: phosphatidic acid binding6.09E-03
86GO:0008121: ubiquinol-cytochrome-c reductase activity7.20E-03
87GO:0008143: poly(A) binding7.20E-03
88GO:0008320: protein transmembrane transporter activity7.20E-03
89GO:0016209: antioxidant activity8.39E-03
90GO:0015035: protein disulfide oxidoreductase activity8.82E-03
91GO:0046914: transition metal ion binding9.63E-03
92GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.09E-02
93GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.09E-02
94GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.09E-02
95GO:0045309: protein phosphorylated amino acid binding1.23E-02
96GO:0001055: RNA polymerase II activity1.23E-02
97GO:0001054: RNA polymerase I activity1.52E-02
98GO:0019904: protein domain specific binding1.52E-02
99GO:0046961: proton-transporting ATPase activity, rotational mechanism1.52E-02
100GO:0004129: cytochrome-c oxidase activity1.52E-02
101GO:0001056: RNA polymerase III activity1.68E-02
102GO:0000049: tRNA binding1.68E-02
103GO:0008081: phosphoric diester hydrolase activity1.84E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity1.84E-02
105GO:0015266: protein channel activity1.84E-02
106GO:0005315: inorganic phosphate transmembrane transporter activity1.84E-02
107GO:0003824: catalytic activity2.22E-02
108GO:0043621: protein self-association2.25E-02
109GO:0051536: iron-sulfur cluster binding2.53E-02
110GO:0043130: ubiquitin binding2.53E-02
111GO:0003714: transcription corepressor activity2.53E-02
112GO:0004298: threonine-type endopeptidase activity2.90E-02
113GO:0016788: hydrolase activity, acting on ester bonds3.03E-02
114GO:0016491: oxidoreductase activity3.11E-02
115GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.42E-02
116GO:0008514: organic anion transmembrane transporter activity3.49E-02
117GO:0003756: protein disulfide isomerase activity3.49E-02
118GO:0005515: protein binding3.50E-02
119GO:0004527: exonuclease activity4.12E-02
120GO:0046873: metal ion transmembrane transporter activity4.12E-02
121GO:0008080: N-acetyltransferase activity4.12E-02
122GO:0004386: helicase activity4.34E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0097361: CIA complex0.00E+00
3GO:0005747: mitochondrial respiratory chain complex I6.18E-16
4GO:0045271: respiratory chain complex I6.23E-07
5GO:0005829: cytosol3.61E-06
6GO:0045273: respiratory chain complex II2.33E-05
7GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.33E-05
8GO:0033179: proton-transporting V-type ATPase, V0 domain1.23E-04
9GO:0031966: mitochondrial membrane1.41E-04
10GO:0005746: mitochondrial respiratory chain1.89E-04
11GO:0030904: retromer complex2.68E-04
12GO:0005773: vacuole4.35E-04
13GO:0000152: nuclear ubiquitin ligase complex4.64E-04
14GO:0005845: mRNA cap binding complex4.64E-04
15GO:0000421: autophagosome membrane5.75E-04
16GO:0005759: mitochondrial matrix7.46E-04
17GO:0005737: cytoplasm7.74E-04
18GO:0005846: nuclear cap binding complex1.00E-03
19GO:0034274: Atg12-Atg5-Atg16 complex1.00E-03
20GO:0005765: lysosomal membrane1.33E-03
21GO:0005838: proteasome regulatory particle1.63E-03
22GO:0009507: chloroplast1.78E-03
23GO:0005750: mitochondrial respiratory chain complex III1.95E-03
24GO:0005753: mitochondrial proton-transporting ATP synthase complex2.19E-03
25GO:0005968: Rab-protein geranylgeranyltransferase complex2.37E-03
26GO:0005758: mitochondrial intermembrane space2.70E-03
27GO:0031969: chloroplast membrane2.77E-03
28GO:0016471: vacuolar proton-transporting V-type ATPase complex3.18E-03
29GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)3.18E-03
30GO:0031372: UBC13-MMS2 complex3.18E-03
31GO:0009517: PSII associated light-harvesting complex II3.18E-03
32GO:0031902: late endosome membrane3.33E-03
33GO:0031410: cytoplasmic vesicle3.59E-03
34GO:0009536: plastid3.80E-03
35GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain4.08E-03
36GO:0008250: oligosaccharyltransferase complex4.08E-03
37GO:0005739: mitochondrion4.87E-03
38GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)5.05E-03
39GO:0005771: multivesicular body5.05E-03
40GO:0031463: Cul3-RING ubiquitin ligase complex5.05E-03
41GO:0031209: SCAR complex5.05E-03
42GO:0005783: endoplasmic reticulum5.68E-03
43GO:0009840: chloroplastic endopeptidase Clp complex6.09E-03
44GO:0005777: peroxisome6.20E-03
45GO:0005789: endoplasmic reticulum membrane6.38E-03
46GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane7.20E-03
47GO:0031359: integral component of chloroplast outer membrane7.20E-03
48GO:0009501: amyloplast8.39E-03
49GO:0034045: pre-autophagosomal structure membrane9.63E-03
50GO:0005763: mitochondrial small ribosomal subunit1.09E-02
51GO:0005736: DNA-directed RNA polymerase I complex1.09E-02
52GO:0031901: early endosome membrane1.09E-02
53GO:0009543: chloroplast thylakoid lumen1.13E-02
54GO:0016604: nuclear body1.23E-02
55GO:0005666: DNA-directed RNA polymerase III complex1.23E-02
56GO:0005665: DNA-directed RNA polymerase II, core complex1.68E-02
57GO:0005774: vacuolar membrane1.85E-02
58GO:0005764: lysosome2.00E-02
59GO:0005875: microtubule associated complex2.35E-02
60GO:0000419: DNA-directed RNA polymerase V complex2.35E-02
61GO:0070469: respiratory chain2.71E-02
62GO:0005839: proteasome core complex2.90E-02
63GO:0009532: plastid stroma2.90E-02
64GO:0016607: nuclear speck3.42E-02
65GO:0005744: mitochondrial inner membrane presequence translocase complex3.49E-02
66GO:0009941: chloroplast envelope3.80E-02
67GO:0009523: photosystem II4.56E-02
<
Gene type



Gene DE type