co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G22290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
9	GO:0030155: regulation of cell adhesion	0.00E+00
10	GO:0015979: photosynthesis	4.67E-08
11	GO:0009773: photosynthetic electron transport in photosystem I	1.68E-05
12	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.87E-05
13	GO:0061077: chaperone-mediated protein folding	7.43E-05
14	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.18E-04
15	GO:0005980: glycogen catabolic process	2.18E-04
16	GO:0043953: protein transport by the Tat complex	2.18E-04
17	GO:0000476: maturation of 4.5S rRNA	2.18E-04
18	GO:0000967: rRNA 5'-end processing	2.18E-04
19	GO:0015671: oxygen transport	2.18E-04
20	GO:0010480: microsporocyte differentiation	2.18E-04
21	GO:0065002: intracellular protein transmembrane transport	2.18E-04
22	GO:0043007: maintenance of rDNA	2.18E-04
23	GO:0010028: xanthophyll cycle	2.18E-04
24	GO:0010450: inflorescence meristem growth	2.18E-04
25	GO:0006810: transport	3.85E-04
26	GO:0006782: protoporphyrinogen IX biosynthetic process	3.94E-04
27	GO:0015995: chlorophyll biosynthetic process	4.29E-04
28	GO:0018026: peptidyl-lysine monomethylation	4.86E-04
29	GO:0031648: protein destabilization	4.86E-04
30	GO:0016122: xanthophyll metabolic process	4.86E-04
31	GO:0006521: regulation of cellular amino acid metabolic process	4.86E-04
32	GO:0051262: protein tetramerization	4.86E-04
33	GO:0034470: ncRNA processing	4.86E-04
34	GO:0009934: regulation of meristem structural organization	6.66E-04
35	GO:0009405: pathogenesis	7.90E-04
36	GO:0010623: programmed cell death involved in cell development	7.90E-04
37	GO:0080055: low-affinity nitrate transport	7.90E-04
38	GO:0045165: cell fate commitment	7.90E-04
39	GO:0048281: inflorescence morphogenesis	7.90E-04
40	GO:0009944: polarity specification of adaxial/abaxial axis	9.15E-04
41	GO:0010148: transpiration	1.13E-03
42	GO:0010306: rhamnogalacturonan II biosynthetic process	1.13E-03
43	GO:1901332: negative regulation of lateral root development	1.13E-03
44	GO:0015994: chlorophyll metabolic process	1.50E-03
45	GO:0010508: positive regulation of autophagy	1.50E-03
46	GO:0006546: glycine catabolic process	1.50E-03
47	GO:0010021: amylopectin biosynthetic process	1.50E-03
48	GO:0006808: regulation of nitrogen utilization	1.50E-03
49	GO:0051322: anaphase	1.50E-03
50	GO:0019464: glycine decarboxylation via glycine cleavage system	1.50E-03
51	GO:0006109: regulation of carbohydrate metabolic process	1.50E-03
52	GO:0009735: response to cytokinin	1.79E-03
53	GO:0035434: copper ion transmembrane transport	1.91E-03
54	GO:1902183: regulation of shoot apical meristem development	1.91E-03
55	GO:0010158: abaxial cell fate specification	1.91E-03
56	GO:0042793: transcription from plastid promoter	2.35E-03
57	GO:0010190: cytochrome b6f complex assembly	2.35E-03
58	GO:0003006: developmental process involved in reproduction	2.35E-03
59	GO:0042549: photosystem II stabilization	2.35E-03
60	GO:0042026: protein refolding	2.83E-03
61	GO:0006458: 'de novo' protein folding	2.83E-03
62	GO:0010027: thylakoid membrane organization	3.17E-03
63	GO:0048437: floral organ development	3.33E-03
64	GO:0070370: cellular heat acclimation	3.33E-03
65	GO:0009645: response to low light intensity stimulus	3.33E-03
66	GO:0010103: stomatal complex morphogenesis	3.33E-03
67	GO:0009409: response to cold	3.75E-03
68	GO:0005978: glycogen biosynthetic process	3.86E-03
69	GO:0006353: DNA-templated transcription, termination	3.86E-03
70	GO:0001558: regulation of cell growth	4.42E-03
71	GO:0010093: specification of floral organ identity	4.42E-03
72	GO:0009631: cold acclimation	4.76E-03
73	GO:0019432: triglyceride biosynthetic process	5.00E-03
74	GO:0048507: meristem development	5.00E-03
75	GO:0051865: protein autoubiquitination	5.00E-03
76	GO:2000024: regulation of leaf development	5.00E-03
77	GO:0006783: heme biosynthetic process	5.00E-03
78	GO:0042761: very long-chain fatty acid biosynthetic process	5.62E-03
79	GO:0005982: starch metabolic process	5.62E-03
80	GO:0010205: photoinhibition	5.62E-03
81	GO:0006779: porphyrin-containing compound biosynthetic process	5.62E-03
82	GO:0006631: fatty acid metabolic process	6.20E-03
83	GO:0048829: root cap development	6.25E-03
84	GO:0031627: telomeric loop formation	6.25E-03
85	GO:0019684: photosynthesis, light reaction	6.91E-03
86	GO:0009089: lysine biosynthetic process via diaminopimelate	6.91E-03
87	GO:0009073: aromatic amino acid family biosynthetic process	6.91E-03
88	GO:0043085: positive regulation of catalytic activity	6.91E-03
89	GO:0048229: gametophyte development	6.91E-03
90	GO:0010015: root morphogenesis	6.91E-03
91	GO:0010582: floral meristem determinacy	7.60E-03
92	GO:0071365: cellular response to auxin stimulus	7.60E-03
93	GO:0010102: lateral root morphogenesis	8.30E-03
94	GO:0010075: regulation of meristem growth	8.30E-03
95	GO:0009767: photosynthetic electron transport chain	8.30E-03
96	GO:0048467: gynoecium development	9.03E-03
97	GO:0009933: meristem structural organization	9.03E-03
98	GO:0009266: response to temperature stimulus	9.03E-03
99	GO:0006302: double-strand break repair	9.03E-03
100	GO:0080167: response to karrikin	9.40E-03
101	GO:0010030: positive regulation of seed germination	9.79E-03
102	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.82E-03
103	GO:0010025: wax biosynthetic process	1.06E-02
104	GO:0043086: negative regulation of catalytic activity	1.07E-02
105	GO:0045454: cell redox homeostasis	1.18E-02
106	GO:0007017: microtubule-based process	1.22E-02
107	GO:0009768: photosynthesis, light harvesting in photosystem I	1.22E-02
108	GO:0006825: copper ion transport	1.22E-02
109	GO:0051302: regulation of cell division	1.22E-02
110	GO:0019915: lipid storage	1.30E-02
111	GO:0051321: meiotic cell cycle	1.30E-02
112	GO:0003333: amino acid transmembrane transport	1.30E-02
113	GO:0006869: lipid transport	1.33E-02
114	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.39E-02
115	GO:0019748: secondary metabolic process	1.39E-02
116	GO:0030245: cellulose catabolic process	1.39E-02
117	GO:0009686: gibberellin biosynthetic process	1.48E-02
118	GO:0001944: vasculature development	1.48E-02
119	GO:0010089: xylem development	1.57E-02
120	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.66E-02
121	GO:0042631: cellular response to water deprivation	1.75E-02
122	GO:0048653: anther development	1.75E-02
123	GO:0010154: fruit development	1.85E-02
124	GO:0006662: glycerol ether metabolic process	1.85E-02
125	GO:0048868: pollen tube development	1.85E-02
126	GO:0019252: starch biosynthetic process	2.05E-02
127	GO:0048235: pollen sperm cell differentiation	2.25E-02
128	GO:0045490: pectin catabolic process	2.25E-02
129	GO:0009414: response to water deprivation	2.33E-02
130	GO:0071281: cellular response to iron ion	2.36E-02
131	GO:1901657: glycosyl compound metabolic process	2.36E-02
132	GO:0009567: double fertilization forming a zygote and endosperm	2.46E-02
133	GO:0000910: cytokinesis	2.68E-02
134	GO:0030154: cell differentiation	2.74E-02
135	GO:0009607: response to biotic stimulus	2.91E-02
136	GO:0009627: systemic acquired resistance	3.02E-02
137	GO:0018298: protein-chromophore linkage	3.37E-02
138	GO:0042254: ribosome biogenesis	3.54E-02
139	GO:0006970: response to osmotic stress	3.74E-02
140	GO:0006865: amino acid transport	3.86E-02
141	GO:0034599: cellular response to oxidative stress	4.12E-02
142	GO:0005975: carbohydrate metabolic process	4.43E-02
143	GO:0006412: translation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.41E-05
4	GO:0008184: glycogen phosphorylase activity	2.18E-04
5	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.18E-04
6	GO:0004853: uroporphyrinogen decarboxylase activity	2.18E-04
7	GO:0004645: phosphorylase activity	2.18E-04
8	GO:0005344: oxygen transporter activity	2.18E-04
9	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.18E-04
10	GO:0005227: calcium activated cation channel activity	2.18E-04
11	GO:0044183: protein binding involved in protein folding	4.56E-04
12	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.86E-04
13	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.86E-04
14	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.86E-04
15	GO:0016868: intramolecular transferase activity, phosphotransferases	4.86E-04
16	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.86E-04
17	GO:0004565: beta-galactosidase activity	5.92E-04
18	GO:0043169: cation binding	7.90E-04
19	GO:0017150: tRNA dihydrouridine synthase activity	7.90E-04
20	GO:0090729: toxin activity	7.90E-04
21	GO:0080054: low-affinity nitrate transmembrane transporter activity	7.90E-04
22	GO:0005528: FK506 binding	9.15E-04
23	GO:0004857: enzyme inhibitor activity	9.15E-04
24	GO:0043621: protein self-association	9.99E-04
25	GO:0033612: receptor serine/threonine kinase binding	1.10E-03
26	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.13E-03
27	GO:0016851: magnesium chelatase activity	1.13E-03
28	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.13E-03
29	GO:0030570: pectate lyase activity	1.31E-03
30	GO:0080032: methyl jasmonate esterase activity	1.50E-03
31	GO:0010328: auxin influx transmembrane transporter activity	1.50E-03
32	GO:0019199: transmembrane receptor protein kinase activity	1.50E-03
33	GO:0042277: peptide binding	1.50E-03
34	GO:0016279: protein-lysine N-methyltransferase activity	1.50E-03
35	GO:0048038: quinone binding	2.20E-03
36	GO:0080030: methyl indole-3-acetate esterase activity	2.35E-03
37	GO:0019843: rRNA binding	2.73E-03
38	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.83E-03
39	GO:0005261: cation channel activity	2.83E-03
40	GO:0004033: aldo-keto reductase (NADP) activity	3.86E-03
41	GO:0005375: copper ion transmembrane transporter activity	4.42E-03
42	GO:0030145: manganese ion binding	4.76E-03
43	GO:0008047: enzyme activator activity	6.25E-03
44	GO:0003691: double-stranded telomeric DNA binding	6.91E-03
45	GO:0051537: 2 iron, 2 sulfur cluster binding	7.28E-03
46	GO:0008378: galactosyltransferase activity	7.60E-03
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.86E-03
48	GO:0003735: structural constituent of ribosome	7.96E-03
49	GO:0031409: pigment binding	1.06E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.11E-02
51	GO:0008408: 3'-5' exonuclease activity	1.30E-02
52	GO:0015035: protein disulfide oxidoreductase activity	1.33E-02
53	GO:0008810: cellulase activity	1.48E-02
54	GO:0047134: protein-disulfide reductase activity	1.66E-02
55	GO:0016829: lyase activity	1.76E-02
56	GO:0030170: pyridoxal phosphate binding	1.80E-02
57	GO:0001085: RNA polymerase II transcription factor binding	1.85E-02
58	GO:0004791: thioredoxin-disulfide reductase activity	1.95E-02
59	GO:0008289: lipid binding	2.34E-02
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.36E-02
61	GO:0008483: transaminase activity	2.57E-02
62	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.57E-02
63	GO:0005200: structural constituent of cytoskeleton	2.57E-02
64	GO:0016597: amino acid binding	2.68E-02
65	GO:0016168: chlorophyll binding	2.91E-02
66	GO:0102483: scopolin beta-glucosidase activity	3.14E-02
67	GO:0000287: magnesium ion binding	3.41E-02
68	GO:0016788: hydrolase activity, acting on ester bonds	3.54E-02
69	GO:0016491: oxidoreductase activity	3.61E-02
70	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.74E-02
71	GO:0008422: beta-glucosidase activity	4.25E-02
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.46E-02
73	GO:0043565: sequence-specific DNA binding	4.70E-02
74	GO:0004185: serine-type carboxypeptidase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	1.76E-17
4	GO:0009507: chloroplast	3.89E-16
5	GO:0009534: chloroplast thylakoid	3.70E-14
6	GO:0009570: chloroplast stroma	7.00E-11
7	GO:0030095: chloroplast photosystem II	8.47E-09
8	GO:0009538: photosystem I reaction center	2.91E-08
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.91E-08
10	GO:0009941: chloroplast envelope	1.06E-07
11	GO:0009543: chloroplast thylakoid lumen	2.00E-07
12	GO:0009579: thylakoid	3.33E-07
13	GO:0009654: photosystem II oxygen evolving complex	6.42E-05
14	GO:0019898: extrinsic component of membrane	1.91E-04
15	GO:0009782: photosystem I antenna complex	2.18E-04
16	GO:0000791: euchromatin	2.18E-04
17	GO:0009344: nitrite reductase complex [NAD(P)H]	2.18E-04
18	GO:0031361: integral component of thylakoid membrane	2.18E-04
19	GO:0010287: plastoglobule	4.06E-04
20	GO:0030870: Mre11 complex	4.86E-04
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.86E-04
22	GO:0010007: magnesium chelatase complex	7.90E-04
23	GO:0033281: TAT protein transport complex	7.90E-04
24	GO:0031977: thylakoid lumen	8.21E-04
25	GO:0005960: glycine cleavage complex	1.13E-03
26	GO:0000795: synaptonemal complex	1.91E-03
27	GO:0009295: nucleoid	2.82E-03
28	GO:0009533: chloroplast stromal thylakoid	3.33E-03
29	GO:0009501: amyloplast	3.86E-03
30	GO:0000783: nuclear telomere cap complex	4.42E-03
31	GO:0045298: tubulin complex	5.00E-03
32	GO:0005840: ribosome	7.83E-03
33	GO:0009508: plastid chromosome	8.30E-03
34	GO:0009574: preprophase band	8.30E-03
35	GO:0030076: light-harvesting complex	9.79E-03
36	GO:0042651: thylakoid membrane	1.22E-02
37	GO:0015935: small ribosomal subunit	1.30E-02
38	GO:0009522: photosystem I	1.95E-02
39	GO:0009523: photosystem II	2.05E-02
40	GO:0000785: chromatin	2.25E-02
41	GO:0048046: apoplast	2.52E-02
42	GO:0010319: stromule	2.57E-02
43	GO:0005667: transcription factor complex	3.02E-02
44	GO:0009505: plant-type cell wall	3.36E-02
45	GO:0000325: plant-type vacuole	3.74E-02
46	GO:0015934: large ribosomal subunit	3.74E-02
47	GO:0005874: microtubule	4.15E-02