GO Enrichment Analysis of Co-expressed Genes with
AT4G22200
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009661: chromoplast organization | 0.00E+00 |
| 2 | GO:0010243: response to organonitrogen compound | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0071483: cellular response to blue light | 1.95E-08 |
| 5 | GO:0042754: negative regulation of circadian rhythm | 4.31E-07 |
| 6 | GO:2001141: regulation of RNA biosynthetic process | 3.91E-06 |
| 7 | GO:0009902: chloroplast relocation | 7.45E-06 |
| 8 | GO:0010236: plastoquinone biosynthetic process | 1.24E-05 |
| 9 | GO:0048574: long-day photoperiodism, flowering | 6.09E-05 |
| 10 | GO:0071461: cellular response to redox state | 8.96E-05 |
| 11 | GO:0010362: negative regulation of anion channel activity by blue light | 8.96E-05 |
| 12 | GO:0010036: response to boron-containing substance | 8.96E-05 |
| 13 | GO:0046467: membrane lipid biosynthetic process | 8.96E-05 |
| 14 | GO:0031426: polycistronic mRNA processing | 8.96E-05 |
| 15 | GO:0006352: DNA-templated transcription, initiation | 1.29E-04 |
| 16 | GO:0005986: sucrose biosynthetic process | 1.73E-04 |
| 17 | GO:0010207: photosystem II assembly | 1.97E-04 |
| 18 | GO:0009658: chloroplast organization | 2.07E-04 |
| 19 | GO:0000256: allantoin catabolic process | 2.12E-04 |
| 20 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.12E-04 |
| 21 | GO:0006898: receptor-mediated endocytosis | 2.12E-04 |
| 22 | GO:0043496: regulation of protein homodimerization activity | 2.12E-04 |
| 23 | GO:0080005: photosystem stoichiometry adjustment | 2.12E-04 |
| 24 | GO:0007154: cell communication | 2.12E-04 |
| 25 | GO:0008299: isoprenoid biosynthetic process | 3.07E-04 |
| 26 | GO:0071836: nectar secretion | 3.54E-04 |
| 27 | GO:0044375: regulation of peroxisome size | 3.54E-04 |
| 28 | GO:0010136: ureide catabolic process | 3.54E-04 |
| 29 | GO:0046713: borate transport | 5.10E-04 |
| 30 | GO:0010371: regulation of gibberellin biosynthetic process | 5.10E-04 |
| 31 | GO:0010239: chloroplast mRNA processing | 5.10E-04 |
| 32 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 5.10E-04 |
| 33 | GO:0006145: purine nucleobase catabolic process | 5.10E-04 |
| 34 | GO:0010148: transpiration | 5.10E-04 |
| 35 | GO:0010021: amylopectin biosynthetic process | 6.78E-04 |
| 36 | GO:0019464: glycine decarboxylation via glycine cleavage system | 6.78E-04 |
| 37 | GO:0006546: glycine catabolic process | 6.78E-04 |
| 38 | GO:0009904: chloroplast accumulation movement | 8.59E-04 |
| 39 | GO:0016120: carotene biosynthetic process | 8.59E-04 |
| 40 | GO:0007623: circadian rhythm | 8.76E-04 |
| 41 | GO:0006555: methionine metabolic process | 1.05E-03 |
| 42 | GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | 1.05E-03 |
| 43 | GO:0015995: chlorophyll biosynthetic process | 1.12E-03 |
| 44 | GO:0009903: chloroplast avoidance movement | 1.25E-03 |
| 45 | GO:0010189: vitamin E biosynthetic process | 1.25E-03 |
| 46 | GO:0009648: photoperiodism | 1.25E-03 |
| 47 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.25E-03 |
| 48 | GO:0070370: cellular heat acclimation | 1.46E-03 |
| 49 | GO:0009637: response to blue light | 1.56E-03 |
| 50 | GO:0050821: protein stabilization | 1.69E-03 |
| 51 | GO:0009231: riboflavin biosynthetic process | 1.69E-03 |
| 52 | GO:0006102: isocitrate metabolic process | 1.69E-03 |
| 53 | GO:0016559: peroxisome fission | 1.69E-03 |
| 54 | GO:0009932: cell tip growth | 1.93E-03 |
| 55 | GO:0071482: cellular response to light stimulus | 1.93E-03 |
| 56 | GO:0010100: negative regulation of photomorphogenesis | 1.93E-03 |
| 57 | GO:0048507: meristem development | 2.18E-03 |
| 58 | GO:0015979: photosynthesis | 2.33E-03 |
| 59 | GO:0051453: regulation of intracellular pH | 2.43E-03 |
| 60 | GO:0009638: phototropism | 2.43E-03 |
| 61 | GO:0009970: cellular response to sulfate starvation | 2.70E-03 |
| 62 | GO:0006995: cellular response to nitrogen starvation | 2.70E-03 |
| 63 | GO:0016485: protein processing | 2.98E-03 |
| 64 | GO:0008285: negative regulation of cell proliferation | 2.98E-03 |
| 65 | GO:0009767: photosynthetic electron transport chain | 3.56E-03 |
| 66 | GO:0007015: actin filament organization | 3.86E-03 |
| 67 | GO:0007031: peroxisome organization | 4.18E-03 |
| 68 | GO:0006071: glycerol metabolic process | 4.50E-03 |
| 69 | GO:0010073: meristem maintenance | 5.17E-03 |
| 70 | GO:0006366: transcription from RNA polymerase II promoter | 5.52E-03 |
| 71 | GO:0009409: response to cold | 5.91E-03 |
| 72 | GO:0010227: floral organ abscission | 6.23E-03 |
| 73 | GO:0009739: response to gibberellin | 7.30E-03 |
| 74 | GO:0010118: stomatal movement | 7.37E-03 |
| 75 | GO:0042335: cuticle development | 7.37E-03 |
| 76 | GO:0010182: sugar mediated signaling pathway | 7.77E-03 |
| 77 | GO:0010468: regulation of gene expression | 7.79E-03 |
| 78 | GO:0045893: positive regulation of transcription, DNA-templated | 7.94E-03 |
| 79 | GO:0042752: regulation of circadian rhythm | 8.17E-03 |
| 80 | GO:0019252: starch biosynthetic process | 8.58E-03 |
| 81 | GO:0009791: post-embryonic development | 8.58E-03 |
| 82 | GO:0009567: double fertilization forming a zygote and endosperm | 1.03E-02 |
| 83 | GO:0071805: potassium ion transmembrane transport | 1.07E-02 |
| 84 | GO:0055114: oxidation-reduction process | 1.08E-02 |
| 85 | GO:0009723: response to ethylene | 1.17E-02 |
| 86 | GO:0042128: nitrate assimilation | 1.26E-02 |
| 87 | GO:0010411: xyloglucan metabolic process | 1.31E-02 |
| 88 | GO:0018298: protein-chromophore linkage | 1.41E-02 |
| 89 | GO:0008219: cell death | 1.41E-02 |
| 90 | GO:0000160: phosphorelay signal transduction system | 1.46E-02 |
| 91 | GO:0010218: response to far red light | 1.51E-02 |
| 92 | GO:0006811: ion transport | 1.51E-02 |
| 93 | GO:0010043: response to zinc ion | 1.56E-02 |
| 94 | GO:0007568: aging | 1.56E-02 |
| 95 | GO:0009414: response to water deprivation | 1.58E-02 |
| 96 | GO:0034599: cellular response to oxidative stress | 1.72E-02 |
| 97 | GO:0006099: tricarboxylic acid cycle | 1.72E-02 |
| 98 | GO:0009751: response to salicylic acid | 1.83E-02 |
| 99 | GO:0042542: response to hydrogen peroxide | 1.93E-02 |
| 100 | GO:0010114: response to red light | 1.99E-02 |
| 101 | GO:0009753: response to jasmonic acid | 1.99E-02 |
| 102 | GO:0009640: photomorphogenesis | 1.99E-02 |
| 103 | GO:0042546: cell wall biogenesis | 2.05E-02 |
| 104 | GO:0042538: hyperosmotic salinity response | 2.34E-02 |
| 105 | GO:0006813: potassium ion transport | 2.46E-02 |
| 106 | GO:0006857: oligopeptide transport | 2.58E-02 |
| 107 | GO:0046686: response to cadmium ion | 2.85E-02 |
| 108 | GO:0009735: response to cytokinin | 3.01E-02 |
| 109 | GO:0009624: response to nematode | 3.16E-02 |
| 110 | GO:0035556: intracellular signal transduction | 3.48E-02 |
| 111 | GO:0042744: hydrogen peroxide catabolic process | 4.07E-02 |
| 112 | GO:0009737: response to abscisic acid | 4.19E-02 |
| 113 | GO:0016036: cellular response to phosphate starvation | 4.44E-02 |
| 114 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 2 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 3 | GO:0050347: trans-octaprenyltranstransferase activity | 4.31E-07 |
| 4 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 4.31E-07 |
| 5 | GO:0004180: carboxypeptidase activity | 1.64E-06 |
| 6 | GO:0001053: plastid sigma factor activity | 7.45E-06 |
| 7 | GO:0016987: sigma factor activity | 7.45E-06 |
| 8 | GO:0004328: formamidase activity | 8.96E-05 |
| 9 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 8.96E-05 |
| 10 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 8.96E-05 |
| 11 | GO:0035671: enone reductase activity | 8.96E-05 |
| 12 | GO:0080139: borate efflux transmembrane transporter activity | 8.96E-05 |
| 13 | GO:0016783: sulfurtransferase activity | 8.96E-05 |
| 14 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 2.12E-04 |
| 15 | GO:0033201: alpha-1,4-glucan synthase activity | 2.12E-04 |
| 16 | GO:0004046: aminoacylase activity | 2.12E-04 |
| 17 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 2.12E-04 |
| 18 | GO:0004096: catalase activity | 3.54E-04 |
| 19 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 3.54E-04 |
| 20 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.54E-04 |
| 21 | GO:0046524: sucrose-phosphate synthase activity | 3.54E-04 |
| 22 | GO:0004373: glycogen (starch) synthase activity | 3.54E-04 |
| 23 | GO:0003913: DNA photolyase activity | 3.54E-04 |
| 24 | GO:0004848: ureidoglycolate hydrolase activity | 3.54E-04 |
| 25 | GO:0004557: alpha-galactosidase activity | 3.54E-04 |
| 26 | GO:0003935: GTP cyclohydrolase II activity | 3.54E-04 |
| 27 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 3.54E-04 |
| 28 | GO:0050307: sucrose-phosphate phosphatase activity | 3.54E-04 |
| 29 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 5.10E-04 |
| 30 | GO:0046715: borate transmembrane transporter activity | 5.10E-04 |
| 31 | GO:0009882: blue light photoreceptor activity | 5.10E-04 |
| 32 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 5.10E-04 |
| 33 | GO:0048027: mRNA 5'-UTR binding | 5.10E-04 |
| 34 | GO:0004416: hydroxyacylglutathione hydrolase activity | 5.10E-04 |
| 35 | GO:0016851: magnesium chelatase activity | 5.10E-04 |
| 36 | GO:0004792: thiosulfate sulfurtransferase activity | 5.10E-04 |
| 37 | GO:0009011: starch synthase activity | 6.78E-04 |
| 38 | GO:0015301: anion:anion antiporter activity | 8.59E-04 |
| 39 | GO:0005452: inorganic anion exchanger activity | 8.59E-04 |
| 40 | GO:0004709: MAP kinase kinase kinase activity | 1.05E-03 |
| 41 | GO:0000293: ferric-chelate reductase activity | 1.05E-03 |
| 42 | GO:0008236: serine-type peptidase activity | 1.18E-03 |
| 43 | GO:0016157: sucrose synthase activity | 1.25E-03 |
| 44 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.18E-03 |
| 45 | GO:0000989: transcription factor activity, transcription factor binding | 2.18E-03 |
| 46 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.67E-03 |
| 47 | GO:0019904: protein domain specific binding | 2.98E-03 |
| 48 | GO:0000155: phosphorelay sensor kinase activity | 3.56E-03 |
| 49 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.86E-03 |
| 50 | GO:0001046: core promoter sequence-specific DNA binding | 4.83E-03 |
| 51 | GO:0015079: potassium ion transmembrane transporter activity | 5.17E-03 |
| 52 | GO:0016887: ATPase activity | 5.61E-03 |
| 53 | GO:0008080: N-acetyltransferase activity | 7.77E-03 |
| 54 | GO:0010181: FMN binding | 8.17E-03 |
| 55 | GO:0042802: identical protein binding | 8.29E-03 |
| 56 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 8.99E-03 |
| 57 | GO:0048038: quinone binding | 8.99E-03 |
| 58 | GO:0000287: magnesium ion binding | 9.92E-03 |
| 59 | GO:0016791: phosphatase activity | 1.03E-02 |
| 60 | GO:0008237: metallopeptidase activity | 1.07E-02 |
| 61 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.31E-02 |
| 62 | GO:0030247: polysaccharide binding | 1.31E-02 |
| 63 | GO:0004721: phosphoprotein phosphatase activity | 1.31E-02 |
| 64 | GO:0030145: manganese ion binding | 1.56E-02 |
| 65 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.56E-02 |
| 66 | GO:0050897: cobalt ion binding | 1.56E-02 |
| 67 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.77E-02 |
| 68 | GO:0005215: transporter activity | 1.85E-02 |
| 69 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.10E-02 |
| 70 | GO:0015293: symporter activity | 2.16E-02 |
| 71 | GO:0051287: NAD binding | 2.28E-02 |
| 72 | GO:0016491: oxidoreductase activity | 2.31E-02 |
| 73 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.84E-02 |
| 74 | GO:0016746: transferase activity, transferring acyl groups | 3.23E-02 |
| 75 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.78E-02 |
| 76 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 4.27E-02 |
| 77 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.32E-08 |
| 2 | GO:0043674: columella | 8.96E-05 |
| 3 | GO:0005777: peroxisome | 2.97E-04 |
| 4 | GO:0016328: lateral plasma membrane | 3.54E-04 |
| 5 | GO:0010007: magnesium chelatase complex | 3.54E-04 |
| 6 | GO:0005960: glycine cleavage complex | 5.10E-04 |
| 7 | GO:0010319: stromule | 8.61E-04 |
| 8 | GO:0009501: amyloplast | 1.69E-03 |
| 9 | GO:0031982: vesicle | 1.69E-03 |
| 10 | GO:0009514: glyoxysome | 1.93E-03 |
| 11 | GO:0005779: integral component of peroxisomal membrane | 1.93E-03 |
| 12 | GO:0042644: chloroplast nucleoid | 2.18E-03 |
| 13 | GO:0009535: chloroplast thylakoid membrane | 3.36E-03 |
| 14 | GO:0009536: plastid | 5.08E-03 |
| 15 | GO:0042651: thylakoid membrane | 5.17E-03 |
| 16 | GO:0009532: plastid stroma | 5.52E-03 |
| 17 | GO:0005778: peroxisomal membrane | 1.07E-02 |
| 18 | GO:0031969: chloroplast membrane | 1.25E-02 |
| 19 | GO:0009707: chloroplast outer membrane | 1.41E-02 |
| 20 | GO:0005773: vacuole | 1.51E-02 |
| 21 | GO:0005739: mitochondrion | 2.35E-02 |
| 22 | GO:0005618: cell wall | 2.96E-02 |
| 23 | GO:0009706: chloroplast inner membrane | 3.16E-02 |
| 24 | GO:0010287: plastoglobule | 3.57E-02 |
| 25 | GO:0005623: cell | 3.78E-02 |
| 26 | GO:0009941: chloroplast envelope | 3.79E-02 |