co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G21750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0019323: pentose catabolic process	0.00E+00
4	GO:0000025: maltose catabolic process	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0009877: nodulation	0.00E+00
8	GO:0005980: glycogen catabolic process	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:1905177: tracheary element differentiation	0.00E+00
11	GO:0071474: cellular hyperosmotic response	0.00E+00
12	GO:0010021: amylopectin biosynthetic process	5.21E-05
13	GO:0010025: wax biosynthetic process	8.05E-05
14	GO:0006461: protein complex assembly	8.25E-05
15	GO:0005978: glycogen biosynthetic process	2.73E-04
16	GO:0005991: trehalose metabolic process	2.80E-04
17	GO:0000023: maltose metabolic process	2.80E-04
18	GO:0006431: methionyl-tRNA aminoacylation	2.80E-04
19	GO:0044262: cellular carbohydrate metabolic process	2.80E-04
20	GO:0071902: positive regulation of protein serine/threonine kinase activity	2.80E-04
21	GO:0032958: inositol phosphate biosynthetic process	2.80E-04
22	GO:0010028: xanthophyll cycle	2.80E-04
23	GO:0019252: starch biosynthetic process	3.11E-04
24	GO:0010206: photosystem II repair	4.05E-04
25	GO:0042761: very long-chain fatty acid biosynthetic process	4.79E-04
26	GO:0005982: starch metabolic process	4.79E-04
27	GO:0071712: ER-associated misfolded protein catabolic process	6.14E-04
28	GO:0051262: protein tetramerization	6.14E-04
29	GO:0032527: protein exit from endoplasmic reticulum	6.14E-04
30	GO:0051170: nuclear import	6.14E-04
31	GO:0005976: polysaccharide metabolic process	6.14E-04
32	GO:1901959: positive regulation of cutin biosynthetic process	6.14E-04
33	GO:0090342: regulation of cell aging	6.14E-04
34	GO:0016122: xanthophyll metabolic process	6.14E-04
35	GO:0005983: starch catabolic process	7.38E-04
36	GO:0009817: defense response to fungus, incompatible interaction	7.69E-04
37	GO:0009735: response to cytokinin	8.80E-04
38	GO:0015979: photosynthesis	9.23E-04
39	GO:0009266: response to temperature stimulus	9.39E-04
40	GO:0048281: inflorescence morphogenesis	9.96E-04
41	GO:0010506: regulation of autophagy	9.96E-04
42	GO:0032940: secretion by cell	9.96E-04
43	GO:0006518: peptide metabolic process	9.96E-04
44	GO:0071230: cellular response to amino acid stimulus	9.96E-04
45	GO:1904278: positive regulation of wax biosynthetic process	9.96E-04
46	GO:0010623: programmed cell death involved in cell development	9.96E-04
47	GO:0080055: low-affinity nitrate transport	9.96E-04
48	GO:0031929: TOR signaling	9.96E-04
49	GO:0007623: circadian rhythm	1.24E-03
50	GO:0006631: fatty acid metabolic process	1.28E-03
51	GO:1901000: regulation of response to salt stress	1.42E-03
52	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.42E-03
53	GO:0030100: regulation of endocytosis	1.42E-03
54	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.42E-03
55	GO:0010148: transpiration	1.42E-03
56	GO:0010731: protein glutathionylation	1.42E-03
57	GO:0006424: glutamyl-tRNA aminoacylation	1.42E-03
58	GO:1902358: sulfate transmembrane transport	1.42E-03
59	GO:0006020: inositol metabolic process	1.42E-03
60	GO:0009636: response to toxic substance	1.64E-03
61	GO:0010017: red or far-red light signaling pathway	1.70E-03
62	GO:0046345: abscisic acid catabolic process	1.91E-03
63	GO:0010023: proanthocyanidin biosynthetic process	1.91E-03
64	GO:0019464: glycine decarboxylation via glycine cleavage system	1.91E-03
65	GO:0015994: chlorophyll metabolic process	1.91E-03
66	GO:2000122: negative regulation of stomatal complex development	1.91E-03
67	GO:0015846: polyamine transport	1.91E-03
68	GO:0010600: regulation of auxin biosynthetic process	1.91E-03
69	GO:0045723: positive regulation of fatty acid biosynthetic process	1.91E-03
70	GO:0010508: positive regulation of autophagy	1.91E-03
71	GO:0051205: protein insertion into membrane	1.91E-03
72	GO:0006749: glutathione metabolic process	1.91E-03
73	GO:0042991: transcription factor import into nucleus	1.91E-03
74	GO:0010037: response to carbon dioxide	1.91E-03
75	GO:0006808: regulation of nitrogen utilization	1.91E-03
76	GO:0015976: carbon utilization	1.91E-03
77	GO:0042335: cuticle development	2.36E-03
78	GO:0006544: glycine metabolic process	2.43E-03
79	GO:0006656: phosphatidylcholine biosynthetic process	2.43E-03
80	GO:0032543: mitochondrial translation	2.43E-03
81	GO:0045038: protein import into chloroplast thylakoid membrane	2.43E-03
82	GO:0000470: maturation of LSU-rRNA	3.00E-03
83	GO:0009267: cellular response to starvation	3.00E-03
84	GO:0006563: L-serine metabolic process	3.00E-03
85	GO:0042549: photosystem II stabilization	3.00E-03
86	GO:0046686: response to cadmium ion	3.35E-03
87	GO:0030163: protein catabolic process	3.57E-03
88	GO:0009955: adaxial/abaxial pattern specification	3.62E-03
89	GO:0071470: cellular response to osmotic stress	3.62E-03
90	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.62E-03
91	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.62E-03
92	GO:0009414: response to water deprivation	4.03E-03
93	GO:0070370: cellular heat acclimation	4.26E-03
94	GO:0008272: sulfate transport	4.26E-03
95	GO:0050829: defense response to Gram-negative bacterium	4.26E-03
96	GO:0030307: positive regulation of cell growth	4.26E-03
97	GO:0010103: stomatal complex morphogenesis	4.26E-03
98	GO:0010161: red light signaling pathway	4.26E-03
99	GO:0010928: regulation of auxin mediated signaling pathway	4.95E-03
100	GO:0008610: lipid biosynthetic process	4.95E-03
101	GO:0035265: organ growth	4.95E-03
102	GO:0030091: protein repair	4.95E-03
103	GO:0006353: DNA-templated transcription, termination	4.95E-03
104	GO:0070413: trehalose metabolism in response to stress	4.95E-03
105	GO:0009704: de-etiolation	4.95E-03
106	GO:0009231: riboflavin biosynthetic process	4.95E-03
107	GO:0015995: chlorophyll biosynthetic process	5.33E-03
108	GO:0009827: plant-type cell wall modification	5.67E-03
109	GO:0001558: regulation of cell growth	5.67E-03
110	GO:0009657: plastid organization	5.67E-03
111	GO:0000160: phosphorelay signal transduction system	6.21E-03
112	GO:0006783: heme biosynthetic process	6.43E-03
113	GO:0009407: toxin catabolic process	6.51E-03
114	GO:0009631: cold acclimation	6.83E-03
115	GO:0035999: tetrahydrofolate interconversion	7.22E-03
116	GO:0009409: response to cold	7.65E-03
117	GO:0006949: syncytium formation	8.04E-03
118	GO:0006782: protoporphyrinogen IX biosynthetic process	8.04E-03
119	GO:0016485: protein processing	8.90E-03
120	GO:0048765: root hair cell differentiation	8.90E-03
121	GO:0009640: photomorphogenesis	9.67E-03
122	GO:0010114: response to red light	9.67E-03
123	GO:0008361: regulation of cell size	9.79E-03
124	GO:0006094: gluconeogenesis	1.07E-02
125	GO:0010102: lateral root morphogenesis	1.07E-02
126	GO:0009691: cytokinin biosynthetic process	1.07E-02
127	GO:0006006: glucose metabolic process	1.07E-02
128	GO:0009718: anthocyanin-containing compound biosynthetic process	1.07E-02
129	GO:0010143: cutin biosynthetic process	1.17E-02
130	GO:0010207: photosystem II assembly	1.17E-02
131	GO:0009887: animal organ morphogenesis	1.17E-02
132	GO:0009664: plant-type cell wall organization	1.22E-02
133	GO:0006508: proteolysis	1.44E-02
134	GO:0009944: polarity specification of adaxial/abaxial axis	1.47E-02
135	GO:0006289: nucleotide-excision repair	1.47E-02
136	GO:0005992: trehalose biosynthetic process	1.47E-02
137	GO:0051302: regulation of cell division	1.58E-02
138	GO:0019953: sexual reproduction	1.58E-02
139	GO:0006418: tRNA aminoacylation for protein translation	1.58E-02
140	GO:0007017: microtubule-based process	1.58E-02
141	GO:0006355: regulation of transcription, DNA-templated	1.58E-02
142	GO:0061077: chaperone-mediated protein folding	1.68E-02
143	GO:0003333: amino acid transmembrane transport	1.68E-02
144	GO:0048511: rhythmic process	1.68E-02
145	GO:0035428: hexose transmembrane transport	1.80E-02
146	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.91E-02
147	GO:0009686: gibberellin biosynthetic process	1.91E-02
148	GO:0001944: vasculature development	1.91E-02
149	GO:0006284: base-excision repair	2.03E-02
150	GO:0010089: xylem development	2.03E-02
151	GO:0070417: cellular response to cold	2.15E-02
152	GO:0000413: protein peptidyl-prolyl isomerization	2.27E-02
153	GO:0010268: brassinosteroid homeostasis	2.39E-02
154	GO:0010182: sugar mediated signaling pathway	2.39E-02
155	GO:0046323: glucose import	2.39E-02
156	GO:0006629: lipid metabolic process	2.44E-02
157	GO:0009058: biosynthetic process	2.46E-02
158	GO:0048825: cotyledon development	2.65E-02
159	GO:0000302: response to reactive oxygen species	2.78E-02
160	GO:0016132: brassinosteroid biosynthetic process	2.78E-02
161	GO:1901657: glycosyl compound metabolic process	3.05E-02
162	GO:0016125: sterol metabolic process	3.19E-02
163	GO:0019760: glucosinolate metabolic process	3.19E-02
164	GO:0009639: response to red or far red light	3.19E-02
165	GO:0009828: plant-type cell wall loosening	3.19E-02
166	GO:0006310: DNA recombination	3.19E-02
167	GO:0009739: response to gibberellin	3.61E-02
168	GO:0016126: sterol biosynthetic process	3.62E-02
169	GO:0010027: thylakoid membrane organization	3.62E-02
170	GO:0006974: cellular response to DNA damage stimulus	3.91E-02
171	GO:0042742: defense response to bacterium	4.10E-02
172	GO:0006979: response to oxidative stress	4.15E-02
173	GO:0016049: cell growth	4.21E-02
174	GO:0048481: plant ovule development	4.37E-02
175	GO:0009813: flavonoid biosynthetic process	4.52E-02
176	GO:0009832: plant-type cell wall biogenesis	4.52E-02
177	GO:0055114: oxidation-reduction process	4.66E-02
178	GO:0010218: response to far red light	4.68E-02
179	GO:0010119: regulation of stomatal movement	4.84E-02
180	GO:0007568: aging	4.84E-02
181	GO:0009658: chloroplast organization	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0008184: glycogen phosphorylase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0004645: phosphorylase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:2001070: starch binding	1.20E-04
9	GO:0000829: inositol heptakisphosphate kinase activity	2.80E-04
10	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.80E-04
11	GO:0005227: calcium activated cation channel activity	2.80E-04
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.80E-04
13	GO:0004105: choline-phosphate cytidylyltransferase activity	2.80E-04
14	GO:0000828: inositol hexakisphosphate kinase activity	2.80E-04
15	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.80E-04
16	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	2.80E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	2.80E-04
18	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.80E-04
19	GO:0004825: methionine-tRNA ligase activity	2.80E-04
20	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.80E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	6.14E-04
22	GO:0004750: ribulose-phosphate 3-epimerase activity	6.14E-04
23	GO:0018708: thiol S-methyltransferase activity	6.14E-04
24	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.14E-04
25	GO:0050736: O-malonyltransferase activity	6.14E-04
26	GO:0008967: phosphoglycolate phosphatase activity	6.14E-04
27	GO:0044390: ubiquitin-like protein conjugating enzyme binding	6.14E-04
28	GO:0010297: heteropolysaccharide binding	6.14E-04
29	GO:0047372: acylglycerol lipase activity	6.45E-04
30	GO:0004222: metalloendopeptidase activity	8.70E-04
31	GO:0008266: poly(U) RNA binding	9.39E-04
32	GO:0004324: ferredoxin-NADP+ reductase activity	9.96E-04
33	GO:0043169: cation binding	9.96E-04
34	GO:0004373: glycogen (starch) synthase activity	9.96E-04
35	GO:0017150: tRNA dihydrouridine synthase activity	9.96E-04
36	GO:0050734: hydroxycinnamoyltransferase activity	9.96E-04
37	GO:0005504: fatty acid binding	9.96E-04
38	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	9.96E-04
39	GO:0017108: 5'-flap endonuclease activity	9.96E-04
40	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.96E-04
41	GO:0080054: low-affinity nitrate transmembrane transporter activity	9.96E-04
42	GO:0005528: FK506 binding	1.29E-03
43	GO:0004364: glutathione transferase activity	1.35E-03
44	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.42E-03
45	GO:0003883: CTP synthase activity	1.42E-03
46	GO:0015203: polyamine transmembrane transporter activity	1.42E-03
47	GO:0016851: magnesium chelatase activity	1.42E-03
48	GO:0016740: transferase activity	1.55E-03
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.72E-03
50	GO:0019104: DNA N-glycosylase activity	1.91E-03
51	GO:0045430: chalcone isomerase activity	1.91E-03
52	GO:0004506: squalene monooxygenase activity	1.91E-03
53	GO:0019199: transmembrane receptor protein kinase activity	1.91E-03
54	GO:0009011: starch synthase activity	1.91E-03
55	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.91E-03
56	GO:0042277: peptide binding	1.91E-03
57	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.91E-03
58	GO:0004372: glycine hydroxymethyltransferase activity	2.43E-03
59	GO:0003959: NADPH dehydrogenase activity	2.43E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	3.00E-03
61	GO:0004130: cytochrome-c peroxidase activity	3.00E-03
62	GO:0000156: phosphorelay response regulator activity	3.57E-03
63	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.62E-03
64	GO:0005261: cation channel activity	3.62E-03
65	GO:0004602: glutathione peroxidase activity	3.62E-03
66	GO:0016831: carboxy-lyase activity	4.26E-03
67	GO:0004620: phospholipase activity	4.26E-03
68	GO:0004252: serine-type endopeptidase activity	4.92E-03
69	GO:0030170: pyridoxal phosphate binding	4.92E-03
70	GO:0016209: antioxidant activity	4.95E-03
71	GO:0030674: protein binding, bridging	4.95E-03
72	GO:0008236: serine-type peptidase activity	5.62E-03
73	GO:0008271: secondary active sulfate transmembrane transporter activity	5.67E-03
74	GO:0015174: basic amino acid transmembrane transporter activity	7.22E-03
75	GO:0043565: sequence-specific DNA binding	7.28E-03
76	GO:0044183: protein binding involved in protein folding	8.90E-03
77	GO:0015386: potassium:proton antiporter activity	8.90E-03
78	GO:0015116: sulfate transmembrane transporter activity	9.79E-03
79	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.79E-03
80	GO:0004565: beta-galactosidase activity	1.07E-02
81	GO:0004022: alcohol dehydrogenase (NAD) activity	1.07E-02
82	GO:0004089: carbonate dehydratase activity	1.07E-02
83	GO:0015293: symporter activity	1.09E-02
84	GO:0004190: aspartic-type endopeptidase activity	1.26E-02
85	GO:0015079: potassium ion transmembrane transporter activity	1.58E-02
86	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.60E-02
87	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.61E-02
88	GO:0016874: ligase activity	1.76E-02
89	GO:0016757: transferase activity, transferring glycosyl groups	1.78E-02
90	GO:0016787: hydrolase activity	1.85E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	2.15E-02
92	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.19E-02
93	GO:0019843: rRNA binding	2.34E-02
94	GO:0003713: transcription coactivator activity	2.39E-02
95	GO:0005355: glucose transmembrane transporter activity	2.52E-02
96	GO:0048038: quinone binding	2.78E-02
97	GO:0004518: nuclease activity	2.91E-02
98	GO:0046910: pectinesterase inhibitor activity	3.01E-02
99	GO:0003684: damaged DNA binding	3.19E-02
100	GO:0016791: phosphatase activity	3.19E-02
101	GO:0008237: metallopeptidase activity	3.33E-02
102	GO:0005200: structural constituent of cytoskeleton	3.33E-02
103	GO:0008375: acetylglucosaminyltransferase activity	3.91E-02
104	GO:0102483: scopolin beta-glucosidase activity	4.06E-02
105	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.09E-02
106	GO:0044212: transcription regulatory region DNA binding	4.10E-02
107	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0033557: Slx1-Slx4 complex	0.00E+00
3	GO:0009570: chloroplast stroma	1.40E-19
4	GO:0009534: chloroplast thylakoid	1.22E-16
5	GO:0009507: chloroplast	1.19E-15
6	GO:0009535: chloroplast thylakoid membrane	1.09E-14
7	GO:0009941: chloroplast envelope	1.68E-12
8	GO:0009579: thylakoid	1.84E-07
9	GO:0031977: thylakoid lumen	6.05E-07
10	GO:0009543: chloroplast thylakoid lumen	7.07E-07
11	GO:0009501: amyloplast	6.61E-06
12	GO:0009533: chloroplast stromal thylakoid	2.16E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.80E-04
14	GO:0010319: stromule	4.74E-04
15	GO:0031357: integral component of chloroplast inner membrane	6.14E-04
16	GO:0043036: starch grain	6.14E-04
17	GO:0010287: plastoglobule	7.07E-04
18	GO:0030095: chloroplast photosystem II	9.39E-04
19	GO:0010007: magnesium chelatase complex	9.96E-04
20	GO:0031931: TORC1 complex	9.96E-04
21	GO:0036513: Derlin-1 retrotranslocation complex	1.42E-03
22	GO:0005798: Golgi-associated vesicle	3.00E-03
23	GO:0009538: photosystem I reaction center	4.95E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.43E-03
25	GO:0042644: chloroplast nucleoid	6.43E-03
26	GO:0045298: tubulin complex	6.43E-03
27	GO:0009508: plastid chromosome	1.07E-02
28	GO:0005769: early endosome	1.37E-02
29	GO:0031969: chloroplast membrane	1.49E-02
30	GO:0009706: chloroplast inner membrane	1.86E-02
31	GO:0048046: apoplast	2.05E-02
32	GO:0016020: membrane	2.62E-02
33	GO:0009523: photosystem II	2.65E-02
34	GO:0005759: mitochondrial matrix	2.94E-02
35	GO:0071944: cell periphery	3.05E-02
36	GO:0009295: nucleoid	3.33E-02
37	GO:0015934: large ribosomal subunit	4.84E-02