co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G20760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0090042: tubulin deacetylation	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0010966: regulation of phosphate transport	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:0010027: thylakoid membrane organization	4.78E-10
11	GO:0015979: photosynthesis	2.91E-09
12	GO:0009773: photosynthetic electron transport in photosystem I	2.68E-07
13	GO:0010196: nonphotochemical quenching	2.39E-06
14	GO:0090391: granum assembly	8.31E-06
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.90E-05
16	GO:0010021: amylopectin biosynthetic process	3.46E-05
17	GO:0042549: photosystem II stabilization	8.18E-05
18	GO:0010493: Lewis a epitope biosynthetic process	2.20E-04
19	GO:0000476: maturation of 4.5S rRNA	2.20E-04
20	GO:0006438: valyl-tRNA aminoacylation	2.20E-04
21	GO:0000967: rRNA 5'-end processing	2.20E-04
22	GO:0043953: protein transport by the Tat complex	2.20E-04
23	GO:0000481: maturation of 5S rRNA	2.20E-04
24	GO:0065002: intracellular protein transmembrane transport	2.20E-04
25	GO:0043686: co-translational protein modification	2.20E-04
26	GO:0043007: maintenance of rDNA	2.20E-04
27	GO:1902458: positive regulation of stomatal opening	2.20E-04
28	GO:0034337: RNA folding	2.20E-04
29	GO:0009658: chloroplast organization	2.63E-04
30	GO:0005982: starch metabolic process	3.41E-04
31	GO:0015995: chlorophyll biosynthetic process	4.37E-04
32	GO:0009629: response to gravity	4.90E-04
33	GO:0006432: phenylalanyl-tRNA aminoacylation	4.90E-04
34	GO:0018026: peptidyl-lysine monomethylation	4.90E-04
35	GO:0006729: tetrahydrobiopterin biosynthetic process	4.90E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.90E-04
37	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.90E-04
38	GO:0034470: ncRNA processing	4.90E-04
39	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.90E-04
40	GO:0006094: gluconeogenesis	6.01E-04
41	GO:0010020: chloroplast fission	6.76E-04
42	GO:0010207: photosystem II assembly	6.76E-04
43	GO:0006000: fructose metabolic process	7.98E-04
44	GO:0071492: cellular response to UV-A	7.98E-04
45	GO:0005977: glycogen metabolic process	7.98E-04
46	GO:0006418: tRNA aminoacylation for protein translation	1.02E-03
47	GO:0061077: chaperone-mediated protein folding	1.12E-03
48	GO:0019915: lipid storage	1.12E-03
49	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.14E-03
50	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.14E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.14E-03
52	GO:0006020: inositol metabolic process	1.14E-03
53	GO:0015994: chlorophyll metabolic process	1.51E-03
54	GO:0006546: glycine catabolic process	1.51E-03
55	GO:0006021: inositol biosynthetic process	1.51E-03
56	GO:0071486: cellular response to high light intensity	1.51E-03
57	GO:0006109: regulation of carbohydrate metabolic process	1.51E-03
58	GO:0032543: mitochondrial translation	1.93E-03
59	GO:0006564: L-serine biosynthetic process	1.93E-03
60	GO:0010236: plastoquinone biosynthetic process	1.93E-03
61	GO:0045038: protein import into chloroplast thylakoid membrane	1.93E-03
62	GO:0031365: N-terminal protein amino acid modification	1.93E-03
63	GO:0007094: mitotic spindle assembly checkpoint	1.93E-03
64	GO:0019252: starch biosynthetic process	2.09E-03
65	GO:0042793: transcription from plastid promoter	2.38E-03
66	GO:0046855: inositol phosphate dephosphorylation	2.38E-03
67	GO:1901259: chloroplast rRNA processing	2.86E-03
68	GO:0030488: tRNA methylation	2.86E-03
69	GO:0010189: vitamin E biosynthetic process	2.86E-03
70	GO:1900057: positive regulation of leaf senescence	3.36E-03
71	GO:0032259: methylation	3.36E-03
72	GO:0071446: cellular response to salicylic acid stimulus	3.36E-03
73	GO:0005978: glycogen biosynthetic process	3.90E-03
74	GO:0009642: response to light intensity	3.90E-03
75	GO:0032508: DNA duplex unwinding	3.90E-03
76	GO:2000070: regulation of response to water deprivation	3.90E-03
77	GO:0031540: regulation of anthocyanin biosynthetic process	3.90E-03
78	GO:0000105: histidine biosynthetic process	3.90E-03
79	GO:0009231: riboflavin biosynthetic process	3.90E-03
80	GO:0016559: peroxisome fission	3.90E-03
81	GO:0016311: dephosphorylation	3.98E-03
82	GO:0009817: defense response to fungus, incompatible interaction	4.19E-03
83	GO:0018298: protein-chromophore linkage	4.19E-03
84	GO:0009813: flavonoid biosynthetic process	4.40E-03
85	GO:0007186: G-protein coupled receptor signaling pathway	4.47E-03
86	GO:0032544: plastid translation	4.47E-03
87	GO:0017004: cytochrome complex assembly	4.47E-03
88	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.47E-03
89	GO:0006002: fructose 6-phosphate metabolic process	4.47E-03
90	GO:0071482: cellular response to light stimulus	4.47E-03
91	GO:0015996: chlorophyll catabolic process	4.47E-03
92	GO:0006810: transport	4.53E-03
93	GO:0007568: aging	4.84E-03
94	GO:0010206: photosystem II repair	5.06E-03
95	GO:0009637: response to blue light	5.30E-03
96	GO:0006779: porphyrin-containing compound biosynthetic process	5.68E-03
97	GO:0006782: protoporphyrinogen IX biosynthetic process	6.32E-03
98	GO:0048829: root cap development	6.32E-03
99	GO:0010114: response to red light	6.83E-03
100	GO:0019684: photosynthesis, light reaction	6.98E-03
101	GO:0009089: lysine biosynthetic process via diaminopimelate	6.98E-03
102	GO:0009073: aromatic amino acid family biosynthetic process	6.98E-03
103	GO:0043085: positive regulation of catalytic activity	6.98E-03
104	GO:0006352: DNA-templated transcription, initiation	6.98E-03
105	GO:0009735: response to cytokinin	7.48E-03
106	GO:0005983: starch catabolic process	7.68E-03
107	GO:0045037: protein import into chloroplast stroma	7.68E-03
108	GO:0006790: sulfur compound metabolic process	7.68E-03
109	GO:0010628: positive regulation of gene expression	8.39E-03
110	GO:0005986: sucrose biosynthetic process	8.39E-03
111	GO:0019253: reductive pentose-phosphate cycle	9.13E-03
112	GO:0009266: response to temperature stimulus	9.13E-03
113	GO:0005985: sucrose metabolic process	9.90E-03
114	GO:0046854: phosphatidylinositol phosphorylation	9.90E-03
115	GO:0000162: tryptophan biosynthetic process	1.07E-02
116	GO:0006636: unsaturated fatty acid biosynthetic process	1.07E-02
117	GO:0006096: glycolytic process	1.09E-02
118	GO:0045454: cell redox homeostasis	1.21E-02
119	GO:0016575: histone deacetylation	1.23E-02
120	GO:0009768: photosynthesis, light harvesting in photosystem I	1.23E-02
121	GO:0019953: sexual reproduction	1.23E-02
122	GO:0051321: meiotic cell cycle	1.32E-02
123	GO:0071369: cellular response to ethylene stimulus	1.49E-02
124	GO:0009561: megagametogenesis	1.58E-02
125	GO:0070417: cellular response to cold	1.68E-02
126	GO:0016117: carotenoid biosynthetic process	1.68E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	1.77E-02
128	GO:0006662: glycerol ether metabolic process	1.87E-02
129	GO:0010182: sugar mediated signaling pathway	1.87E-02
130	GO:0007059: chromosome segregation	1.97E-02
131	GO:0006633: fatty acid biosynthetic process	2.07E-02
132	GO:0006412: translation	2.09E-02
133	GO:0071554: cell wall organization or biogenesis	2.17E-02
134	GO:0009567: double fertilization forming a zygote and endosperm	2.49E-02
135	GO:0009911: positive regulation of flower development	2.82E-02
136	GO:0042128: nitrate assimilation	3.05E-02
137	GO:0009834: plant-type secondary cell wall biogenesis	3.66E-02
138	GO:0006499: N-terminal protein myristoylation	3.66E-02
139	GO:0010218: response to far red light	3.66E-02
140	GO:0009867: jasmonic acid mediated signaling pathway	4.03E-02
141	GO:0034599: cellular response to oxidative stress	4.16E-02
142	GO:0006457: protein folding	4.44E-02
143	GO:0006631: fatty acid metabolic process	4.56E-02
144	GO:0009926: auxin polar transport	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
2	GO:0051721: protein phosphatase 2A binding	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0042903: tubulin deacetylase activity	0.00E+00
5	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0043014: alpha-tubulin binding	0.00E+00
9	GO:0004823: leucine-tRNA ligase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
12	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
13	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
14	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
15	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.77E-06
17	GO:0031072: heat shock protein binding	2.71E-05
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.46E-05
19	GO:0005528: FK506 binding	5.63E-05
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.20E-04
21	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.20E-04
22	GO:0050308: sugar-phosphatase activity	2.20E-04
23	GO:0042586: peptide deformylase activity	2.20E-04
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.20E-04
25	GO:0019203: carbohydrate phosphatase activity	2.20E-04
26	GO:0004832: valine-tRNA ligase activity	2.20E-04
27	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.20E-04
28	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.20E-04
29	GO:0004347: glucose-6-phosphate isomerase activity	2.20E-04
30	GO:0019843: rRNA binding	4.53E-04
31	GO:0008934: inositol monophosphate 1-phosphatase activity	4.90E-04
32	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.90E-04
33	GO:0052833: inositol monophosphate 4-phosphatase activity	4.90E-04
34	GO:0004826: phenylalanine-tRNA ligase activity	4.90E-04
35	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.90E-04
36	GO:0019156: isoamylase activity	4.90E-04
37	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.90E-04
38	GO:0047746: chlorophyllase activity	4.90E-04
39	GO:0042389: omega-3 fatty acid desaturase activity	4.90E-04
40	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.90E-04
41	GO:0004617: phosphoglycerate dehydrogenase activity	4.90E-04
42	GO:0004047: aminomethyltransferase activity	4.90E-04
43	GO:0052832: inositol monophosphate 3-phosphatase activity	4.90E-04
44	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.90E-04
45	GO:0043169: cation binding	7.98E-04
46	GO:0003913: DNA photolyase activity	7.98E-04
47	GO:0002161: aminoacyl-tRNA editing activity	7.98E-04
48	GO:0005504: fatty acid binding	7.98E-04
49	GO:0004751: ribose-5-phosphate isomerase activity	7.98E-04
50	GO:0042802: identical protein binding	1.06E-03
51	GO:0048487: beta-tubulin binding	1.14E-03
52	GO:0016851: magnesium chelatase activity	1.14E-03
53	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.14E-03
54	GO:0008168: methyltransferase activity	1.35E-03
55	GO:0016987: sigma factor activity	1.51E-03
56	GO:0045430: chalcone isomerase activity	1.51E-03
57	GO:0016279: protein-lysine N-methyltransferase activity	1.51E-03
58	GO:0001053: plastid sigma factor activity	1.51E-03
59	GO:0004045: aminoacyl-tRNA hydrolase activity	1.51E-03
60	GO:0004812: aminoacyl-tRNA ligase activity	1.56E-03
61	GO:0004040: amidase activity	1.93E-03
62	GO:0051082: unfolded protein binding	2.09E-03
63	GO:0048038: quinone binding	2.23E-03
64	GO:0004556: alpha-amylase activity	2.38E-03
65	GO:2001070: starch binding	2.38E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.86E-03
67	GO:0008483: transaminase activity	2.87E-03
68	GO:0016787: hydrolase activity	3.13E-03
69	GO:0009881: photoreceptor activity	3.36E-03
70	GO:0016168: chlorophyll binding	3.40E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	3.90E-03
72	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.47E-03
73	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.47E-03
74	GO:0008173: RNA methyltransferase activity	4.47E-03
75	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.06E-03
76	GO:0008417: fucosyltransferase activity	5.06E-03
77	GO:0008047: enzyme activator activity	6.32E-03
78	GO:0000049: tRNA binding	7.68E-03
79	GO:0031409: pigment binding	1.07E-02
80	GO:0004857: enzyme inhibitor activity	1.15E-02
81	GO:0004407: histone deacetylase activity	1.15E-02
82	GO:0043424: protein histidine kinase binding	1.23E-02
83	GO:0015035: protein disulfide oxidoreductase activity	1.35E-02
84	GO:0022891: substrate-specific transmembrane transporter activity	1.49E-02
85	GO:0003924: GTPase activity	1.57E-02
86	GO:0003756: protein disulfide isomerase activity	1.58E-02
87	GO:0047134: protein-disulfide reductase activity	1.68E-02
88	GO:0009055: electron carrier activity	1.72E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	1.97E-02
90	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.38E-02
91	GO:0008017: microtubule binding	2.39E-02
92	GO:0016597: amino acid binding	2.71E-02
93	GO:0016413: O-acetyltransferase activity	2.71E-02
94	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.29E-02
95	GO:0000287: magnesium ion binding	3.46E-02
96	GO:0016788: hydrolase activity, acting on ester bonds	3.59E-02
97	GO:0003993: acid phosphatase activity	4.16E-02
98	GO:0052689: carboxylic ester hydrolase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009349: riboflavin synthase complex	0.00E+00
5	GO:0043235: receptor complex	0.00E+00
6	GO:0009507: chloroplast	1.54E-58
7	GO:0009535: chloroplast thylakoid membrane	4.42E-30
8	GO:0009534: chloroplast thylakoid	1.19E-29
9	GO:0009570: chloroplast stroma	1.16E-27
10	GO:0009941: chloroplast envelope	1.69E-20
11	GO:0009579: thylakoid	1.14E-11
12	GO:0009543: chloroplast thylakoid lumen	9.07E-09
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.45E-06
14	GO:0010287: plastoglobule	4.81E-05
15	GO:0042651: thylakoid membrane	6.57E-05
16	GO:0031977: thylakoid lumen	8.96E-05
17	GO:0009538: photosystem I reaction center	1.91E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.20E-04
19	GO:0031361: integral component of thylakoid membrane	2.20E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.90E-04
21	GO:0009508: plastid chromosome	6.01E-04
22	GO:0030095: chloroplast photosystem II	6.76E-04
23	GO:0009528: plastid inner membrane	7.98E-04
24	GO:0010007: magnesium chelatase complex	7.98E-04
25	GO:0033281: TAT protein transport complex	7.98E-04
26	GO:0009654: photosystem II oxygen evolving complex	1.02E-03
27	GO:0009532: plastid stroma	1.12E-03
28	GO:0042646: plastid nucleoid	1.14E-03
29	GO:0005828: kinetochore microtubule	1.51E-03
30	GO:0009527: plastid outer membrane	1.51E-03
31	GO:0000776: kinetochore	1.93E-03
32	GO:0009523: photosystem II	2.09E-03
33	GO:0019898: extrinsic component of membrane	2.09E-03
34	GO:0000777: condensed chromosome kinetochore	2.86E-03
35	GO:0009295: nucleoid	2.87E-03
36	GO:0010319: stromule	2.87E-03
37	GO:0009533: chloroplast stromal thylakoid	3.36E-03
38	GO:0009501: amyloplast	3.90E-03
39	GO:0009707: chloroplast outer membrane	4.19E-03
40	GO:0008180: COP9 signalosome	5.06E-03
41	GO:0042644: chloroplast nucleoid	5.06E-03
42	GO:0005876: spindle microtubule	5.68E-03
43	GO:0055028: cortical microtubule	6.32E-03
44	GO:0012511: monolayer-surrounded lipid storage body	6.98E-03
45	GO:0032040: small-subunit processome	7.68E-03
46	GO:0005840: ribosome	8.04E-03
47	GO:0030076: light-harvesting complex	9.90E-03
48	GO:0009706: chloroplast inner membrane	1.32E-02
49	GO:0009522: photosystem I	1.97E-02
50	GO:0032580: Golgi cisterna membrane	2.49E-02
51	GO:0030529: intracellular ribonucleoprotein complex	2.82E-02
52	GO:0022626: cytosolic ribosome	3.06E-02
53	GO:0009536: plastid	3.33E-02
54	GO:0019005: SCF ubiquitin ligase complex	3.41E-02
55	GO:0015934: large ribosomal subunit	3.78E-02
56	GO:0005874: microtubule	4.21E-02
57	GO:0031969: chloroplast membrane	4.36E-02