GO Enrichment Analysis of Co-expressed Genes with
AT4G20020
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 2 | GO:0071433: cell wall repair | 0.00E+00 |
| 3 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 4 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 7 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 8 | GO:0006884: cell volume homeostasis | 0.00E+00 |
| 9 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 10 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 11 | GO:0006364: rRNA processing | 2.60E-11 |
| 12 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.32E-07 |
| 13 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.51E-07 |
| 14 | GO:0006177: GMP biosynthetic process | 1.22E-04 |
| 15 | GO:0043985: histone H4-R3 methylation | 1.22E-04 |
| 16 | GO:0031120: snRNA pseudouridine synthesis | 1.22E-04 |
| 17 | GO:0031118: rRNA pseudouridine synthesis | 1.22E-04 |
| 18 | GO:0010162: seed dormancy process | 1.71E-04 |
| 19 | GO:0009451: RNA modification | 2.06E-04 |
| 20 | GO:0045041: protein import into mitochondrial intermembrane space | 2.82E-04 |
| 21 | GO:0042254: ribosome biogenesis | 4.16E-04 |
| 22 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.18E-04 |
| 23 | GO:0045039: protein import into mitochondrial inner membrane | 4.65E-04 |
| 24 | GO:0045604: regulation of epidermal cell differentiation | 4.65E-04 |
| 25 | GO:0007005: mitochondrion organization | 5.53E-04 |
| 26 | GO:0009294: DNA mediated transformation | 6.02E-04 |
| 27 | GO:0007276: gamete generation | 6.66E-04 |
| 28 | GO:0051131: chaperone-mediated protein complex assembly | 6.66E-04 |
| 29 | GO:0010501: RNA secondary structure unwinding | 7.61E-04 |
| 30 | GO:0006396: RNA processing | 7.69E-04 |
| 31 | GO:0006479: protein methylation | 8.84E-04 |
| 32 | GO:0046345: abscisic acid catabolic process | 8.84E-04 |
| 33 | GO:0042273: ribosomal large subunit biogenesis | 8.84E-04 |
| 34 | GO:0000460: maturation of 5.8S rRNA | 8.84E-04 |
| 35 | GO:0000470: maturation of LSU-rRNA | 1.37E-03 |
| 36 | GO:0016554: cytidine to uridine editing | 1.37E-03 |
| 37 | GO:0000741: karyogamy | 1.37E-03 |
| 38 | GO:0048444: floral organ morphogenesis | 1.64E-03 |
| 39 | GO:0010077: maintenance of inflorescence meristem identity | 1.64E-03 |
| 40 | GO:0042026: protein refolding | 1.64E-03 |
| 41 | GO:0006458: 'de novo' protein folding | 1.64E-03 |
| 42 | GO:0045995: regulation of embryonic development | 1.92E-03 |
| 43 | GO:0009396: folic acid-containing compound biosynthetic process | 1.92E-03 |
| 44 | GO:0006821: chloride transport | 1.92E-03 |
| 45 | GO:0006400: tRNA modification | 1.92E-03 |
| 46 | GO:0000028: ribosomal small subunit assembly | 2.22E-03 |
| 47 | GO:0042255: ribosome assembly | 2.22E-03 |
| 48 | GO:0006261: DNA-dependent DNA replication | 2.54E-03 |
| 49 | GO:0006189: 'de novo' IMP biosynthetic process | 2.87E-03 |
| 50 | GO:2000024: regulation of leaf development | 2.87E-03 |
| 51 | GO:0000387: spliceosomal snRNP assembly | 3.21E-03 |
| 52 | GO:0035999: tetrahydrofolate interconversion | 3.21E-03 |
| 53 | GO:0006457: protein folding | 3.56E-03 |
| 54 | GO:0010582: floral meristem determinacy | 4.32E-03 |
| 55 | GO:0006626: protein targeting to mitochondrion | 4.71E-03 |
| 56 | GO:0006541: glutamine metabolic process | 5.12E-03 |
| 57 | GO:0032259: methylation | 5.15E-03 |
| 58 | GO:0010030: positive regulation of seed germination | 5.54E-03 |
| 59 | GO:0009553: embryo sac development | 5.54E-03 |
| 60 | GO:0000027: ribosomal large subunit assembly | 6.42E-03 |
| 61 | GO:0030150: protein import into mitochondrial matrix | 6.42E-03 |
| 62 | GO:0051302: regulation of cell division | 6.87E-03 |
| 63 | GO:0061077: chaperone-mediated protein folding | 7.34E-03 |
| 64 | GO:0006730: one-carbon metabolic process | 7.81E-03 |
| 65 | GO:0000413: protein peptidyl-prolyl isomerization | 9.83E-03 |
| 66 | GO:0006412: translation | 1.03E-02 |
| 67 | GO:0010197: polar nucleus fusion | 1.04E-02 |
| 68 | GO:0048825: cotyledon development | 1.15E-02 |
| 69 | GO:0080156: mitochondrial mRNA modification | 1.20E-02 |
| 70 | GO:0046686: response to cadmium ion | 1.37E-02 |
| 71 | GO:0016049: cell growth | 1.82E-02 |
| 72 | GO:0048527: lateral root development | 2.09E-02 |
| 73 | GO:0009853: photorespiration | 2.23E-02 |
| 74 | GO:0045892: negative regulation of transcription, DNA-templated | 2.31E-02 |
| 75 | GO:0000154: rRNA modification | 2.90E-02 |
| 76 | GO:0048364: root development | 2.93E-02 |
| 77 | GO:0006417: regulation of translation | 3.55E-02 |
| 78 | GO:0016569: covalent chromatin modification | 4.06E-02 |
| 79 | GO:0000398: mRNA splicing, via spliceosome | 4.69E-02 |
| 80 | GO:0009555: pollen development | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 2 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 3 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 4 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 5 | GO:0003723: RNA binding | 1.30E-11 |
| 6 | GO:0000166: nucleotide binding | 7.22E-07 |
| 7 | GO:0043021: ribonucleoprotein complex binding | 7.51E-07 |
| 8 | GO:0070181: small ribosomal subunit rRNA binding | 2.83E-06 |
| 9 | GO:0004004: ATP-dependent RNA helicase activity | 6.15E-06 |
| 10 | GO:0030515: snoRNA binding | 5.92E-05 |
| 11 | GO:0008026: ATP-dependent helicase activity | 8.41E-05 |
| 12 | GO:0042134: rRNA primary transcript binding | 1.22E-04 |
| 13 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 1.22E-04 |
| 14 | GO:0001054: RNA polymerase I activity | 2.00E-04 |
| 15 | GO:0044183: protein binding involved in protein folding | 2.00E-04 |
| 16 | GO:0003938: IMP dehydrogenase activity | 2.82E-04 |
| 17 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 2.82E-04 |
| 18 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 2.82E-04 |
| 19 | GO:0008168: methyltransferase activity | 3.81E-04 |
| 20 | GO:0004407: histone deacetylase activity | 4.18E-04 |
| 21 | GO:0048027: mRNA 5'-UTR binding | 6.66E-04 |
| 22 | GO:0003689: DNA clamp loader activity | 1.12E-03 |
| 23 | GO:0004519: endonuclease activity | 1.15E-03 |
| 24 | GO:0016462: pyrophosphatase activity | 1.37E-03 |
| 25 | GO:0003735: structural constituent of ribosome | 1.56E-03 |
| 26 | GO:0050897: cobalt ion binding | 2.13E-03 |
| 27 | GO:0003746: translation elongation factor activity | 2.33E-03 |
| 28 | GO:0008173: RNA methyltransferase activity | 2.54E-03 |
| 29 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.02E-03 |
| 30 | GO:0001056: RNA polymerase III activity | 4.32E-03 |
| 31 | GO:0000049: tRNA binding | 4.32E-03 |
| 32 | GO:0009982: pseudouridine synthase activity | 4.71E-03 |
| 33 | GO:0000175: 3'-5'-exoribonuclease activity | 4.71E-03 |
| 34 | GO:0051082: unfolded protein binding | 5.71E-03 |
| 35 | GO:0005524: ATP binding | 6.25E-03 |
| 36 | GO:0003676: nucleic acid binding | 6.53E-03 |
| 37 | GO:0005216: ion channel activity | 6.87E-03 |
| 38 | GO:0019843: rRNA binding | 7.14E-03 |
| 39 | GO:0016887: ATPase activity | 9.49E-03 |
| 40 | GO:0004527: exonuclease activity | 1.04E-02 |
| 41 | GO:0003729: mRNA binding | 1.28E-02 |
| 42 | GO:0004721: phosphoprotein phosphatase activity | 1.75E-02 |
| 43 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.88E-02 |
| 44 | GO:0016787: hydrolase activity | 2.21E-02 |
| 45 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.30E-02 |
| 46 | GO:0003924: GTPase activity | 2.81E-02 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.98E-02 |
| 48 | GO:0004386: helicase activity | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034709: methylosome | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 4.47E-20 |
| 6 | GO:0032040: small-subunit processome | 4.10E-10 |
| 7 | GO:0030687: preribosome, large subunit precursor | 5.44E-07 |
| 8 | GO:0070545: PeBoW complex | 7.51E-07 |
| 9 | GO:0005763: mitochondrial small ribosomal subunit | 1.20E-04 |
| 10 | GO:0005736: DNA-directed RNA polymerase I complex | 1.20E-04 |
| 11 | GO:0005759: mitochondrial matrix | 1.69E-04 |
| 12 | GO:0005739: mitochondrion | 2.42E-04 |
| 13 | GO:0034715: pICln-Sm protein complex | 4.65E-04 |
| 14 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.66E-04 |
| 15 | GO:0005834: heterotrimeric G-protein complex | 6.37E-04 |
| 16 | GO:0031429: box H/ACA snoRNP complex | 6.66E-04 |
| 17 | GO:0005663: DNA replication factor C complex | 8.84E-04 |
| 18 | GO:0005634: nucleus | 1.09E-03 |
| 19 | GO:0000178: exosome (RNase complex) | 1.12E-03 |
| 20 | GO:0031428: box C/D snoRNP complex | 1.37E-03 |
| 21 | GO:0016363: nuclear matrix | 1.64E-03 |
| 22 | GO:0005618: cell wall | 1.89E-03 |
| 23 | GO:0022627: cytosolic small ribosomal subunit | 2.08E-03 |
| 24 | GO:0034399: nuclear periphery | 2.22E-03 |
| 25 | GO:0005666: DNA-directed RNA polymerase III complex | 3.21E-03 |
| 26 | GO:0015030: Cajal body | 3.21E-03 |
| 27 | GO:0005829: cytosol | 4.02E-03 |
| 28 | GO:0019013: viral nucleocapsid | 4.71E-03 |
| 29 | GO:0005747: mitochondrial respiratory chain complex I | 4.90E-03 |
| 30 | GO:0005743: mitochondrial inner membrane | 4.96E-03 |
| 31 | GO:0005758: mitochondrial intermembrane space | 6.42E-03 |
| 32 | GO:0015935: small ribosomal subunit | 7.34E-03 |
| 33 | GO:0005840: ribosome | 7.52E-03 |
| 34 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 8.80E-03 |
| 35 | GO:0005774: vacuolar membrane | 1.48E-02 |
| 36 | GO:0009506: plasmodesma | 2.48E-02 |
| 37 | GO:0005681: spliceosomal complex | 3.72E-02 |
| 38 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.51E-02 |
| 39 | GO:0005654: nucleoplasm | 4.88E-02 |
| 40 | GO:0009543: chloroplast thylakoid lumen | 4.97E-02 |