co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G19985

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0098586: cellular response to virus	0.00E+00
4	GO:0033231: carbohydrate export	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0042304: regulation of fatty acid biosynthetic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0051246: regulation of protein metabolic process	0.00E+00
10	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
11	GO:0009661: chromoplast organization	0.00E+00
12	GO:0008298: intracellular mRNA localization	0.00E+00
13	GO:2000013: regulation of arginine biosynthetic process via ornithine	0.00E+00
14	GO:0019685: photosynthesis, dark reaction	0.00E+00
15	GO:0016120: carotene biosynthetic process	3.96E-07
16	GO:0010190: cytochrome b6f complex assembly	7.73E-07
17	GO:0080005: photosystem stoichiometry adjustment	2.14E-06
18	GO:0048564: photosystem I assembly	3.37E-06
19	GO:0071482: cellular response to light stimulus	4.91E-06
20	GO:0009657: plastid organization	4.91E-06
21	GO:2001141: regulation of RNA biosynthetic process	1.79E-05
22	GO:0016123: xanthophyll biosynthetic process	5.28E-05
23	GO:0006655: phosphatidylglycerol biosynthetic process	7.77E-05
24	GO:0042372: phylloquinone biosynthetic process	1.08E-04
25	GO:1902334: fructose export from vacuole to cytoplasm	2.13E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	2.13E-04
27	GO:0015755: fructose transport	2.13E-04
28	GO:0019646: aerobic electron transport chain	2.13E-04
29	GO:0009443: pyridoxal 5'-phosphate salvage	2.13E-04
30	GO:0031426: polycistronic mRNA processing	2.13E-04
31	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.13E-04
32	GO:1904966: positive regulation of vitamin E biosynthetic process	2.13E-04
33	GO:1990052: ER to chloroplast lipid transport	2.13E-04
34	GO:0071806: protein transmembrane transport	2.13E-04
35	GO:1904964: positive regulation of phytol biosynthetic process	2.13E-04
36	GO:0042371: vitamin K biosynthetic process	2.13E-04
37	GO:0071461: cellular response to redox state	2.13E-04
38	GO:0006436: tryptophanyl-tRNA aminoacylation	2.13E-04
39	GO:1900426: positive regulation of defense response to bacterium	3.26E-04
40	GO:0010027: thylakoid membrane organization	3.33E-04
41	GO:0006352: DNA-templated transcription, initiation	4.43E-04
42	GO:0015979: photosynthesis	4.62E-04
43	GO:0018298: protein-chromophore linkage	4.71E-04
44	GO:0046741: transport of virus in host, tissue to tissue	4.76E-04
45	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.76E-04
46	GO:0048314: embryo sac morphogenesis	4.76E-04
47	GO:0034755: iron ion transmembrane transport	4.76E-04
48	GO:0000256: allantoin catabolic process	4.76E-04
49	GO:1904143: positive regulation of carotenoid biosynthetic process	4.76E-04
50	GO:0080183: response to photooxidative stress	4.76E-04
51	GO:0080185: effector dependent induction by symbiont of host immune response	4.76E-04
52	GO:0010343: singlet oxygen-mediated programmed cell death	4.76E-04
53	GO:0006790: sulfur compound metabolic process	5.07E-04
54	GO:0016024: CDP-diacylglycerol biosynthetic process	5.07E-04
55	GO:0009767: photosynthetic electron transport chain	5.75E-04
56	GO:0010207: photosystem II assembly	6.47E-04
57	GO:0090351: seedling development	7.24E-04
58	GO:0006013: mannose metabolic process	7.74E-04
59	GO:0002230: positive regulation of defense response to virus by host	7.74E-04
60	GO:0010136: ureide catabolic process	7.74E-04
61	GO:1901672: positive regulation of systemic acquired resistance	7.74E-04
62	GO:0009150: purine ribonucleotide metabolic process	7.74E-04
63	GO:0051604: protein maturation	7.74E-04
64	GO:0006696: ergosterol biosynthetic process	7.74E-04
65	GO:0010239: chloroplast mRNA processing	1.10E-03
66	GO:0090307: mitotic spindle assembly	1.10E-03
67	GO:0006809: nitric oxide biosynthetic process	1.10E-03
68	GO:0006145: purine nucleobase catabolic process	1.10E-03
69	GO:0033014: tetrapyrrole biosynthetic process	1.10E-03
70	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.10E-03
71	GO:0050482: arachidonic acid secretion	1.10E-03
72	GO:0043572: plastid fission	1.10E-03
73	GO:0071484: cellular response to light intensity	1.10E-03
74	GO:0016226: iron-sulfur cluster assembly	1.17E-03
75	GO:0009658: chloroplast organization	1.33E-03
76	GO:0031935: regulation of chromatin silencing	1.47E-03
77	GO:0009765: photosynthesis, light harvesting	1.47E-03
78	GO:0031122: cytoplasmic microtubule organization	1.47E-03
79	GO:0006021: inositol biosynthetic process	1.47E-03
80	GO:0009902: chloroplast relocation	1.47E-03
81	GO:0006808: regulation of nitrogen utilization	1.47E-03
82	GO:0016117: carotenoid biosynthetic process	1.49E-03
83	GO:0034052: positive regulation of plant-type hypersensitive response	1.87E-03
84	GO:0000304: response to singlet oxygen	1.87E-03
85	GO:0010117: photoprotection	1.87E-03
86	GO:0031365: N-terminal protein amino acid modification	1.87E-03
87	GO:0006282: regulation of DNA repair	1.87E-03
88	GO:0009791: post-embryonic development	1.99E-03
89	GO:0046855: inositol phosphate dephosphorylation	2.31E-03
90	GO:0009643: photosynthetic acclimation	2.31E-03
91	GO:0042549: photosystem II stabilization	2.31E-03
92	GO:0009816: defense response to bacterium, incompatible interaction	3.25E-03
93	GO:1900056: negative regulation of leaf senescence	3.26E-03
94	GO:0006401: RNA catabolic process	3.26E-03
95	GO:0048528: post-embryonic root development	3.26E-03
96	GO:0015995: chlorophyll biosynthetic process	3.61E-03
97	GO:0006402: mRNA catabolic process	3.78E-03
98	GO:0030091: protein repair	3.78E-03
99	GO:0006605: protein targeting	3.78E-03
100	GO:0050821: protein stabilization	3.78E-03
101	GO:0006644: phospholipid metabolic process	3.78E-03
102	GO:0007623: circadian rhythm	3.95E-03
103	GO:0032544: plastid translation	4.33E-03
104	GO:0007568: aging	4.62E-03
105	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.90E-03
106	GO:0048507: meristem development	4.90E-03
107	GO:0006783: heme biosynthetic process	4.90E-03
108	GO:0009638: phototropism	5.50E-03
109	GO:0006779: porphyrin-containing compound biosynthetic process	5.50E-03
110	GO:0010380: regulation of chlorophyll biosynthetic process	5.50E-03
111	GO:0031425: chloroplast RNA processing	5.50E-03
112	GO:0006995: cellular response to nitrogen starvation	6.12E-03
113	GO:0045036: protein targeting to chloroplast	6.12E-03
114	GO:0006259: DNA metabolic process	6.12E-03
115	GO:0009773: photosynthetic electron transport in photosystem I	6.77E-03
116	GO:0006265: DNA topological change	6.77E-03
117	GO:0006415: translational termination	6.77E-03
118	GO:0006879: cellular iron ion homeostasis	6.77E-03
119	GO:0009750: response to fructose	6.77E-03
120	GO:0009644: response to high light intensity	7.06E-03
121	GO:0055114: oxidation-reduction process	7.06E-03
122	GO:0006807: nitrogen compound metabolic process	8.13E-03
123	GO:0009718: anthocyanin-containing compound biosynthetic process	8.13E-03
124	GO:0005986: sucrose biosynthetic process	8.13E-03
125	GO:0006364: rRNA processing	8.80E-03
126	GO:0010020: chloroplast fission	8.84E-03
127	GO:0019853: L-ascorbic acid biosynthetic process	9.58E-03
128	GO:0046854: phosphatidylinositol phosphorylation	9.58E-03
129	GO:0006418: tRNA aminoacylation for protein translation	1.19E-02
130	GO:0007017: microtubule-based process	1.19E-02
131	GO:0006825: copper ion transport	1.19E-02
132	GO:0051302: regulation of cell division	1.19E-02
133	GO:0051321: meiotic cell cycle	1.27E-02
134	GO:0006366: transcription from RNA polymerase II promoter	1.27E-02
135	GO:0051260: protein homooligomerization	1.27E-02
136	GO:0006396: RNA processing	1.29E-02
137	GO:0032259: methylation	1.40E-02
138	GO:0070417: cellular response to cold	1.62E-02
139	GO:0042335: cuticle development	1.72E-02
140	GO:0008033: tRNA processing	1.72E-02
141	GO:0010118: stomatal movement	1.72E-02
142	GO:0006508: proteolysis	1.73E-02
143	GO:0006662: glycerol ether metabolic process	1.81E-02
144	GO:0007059: chromosome segregation	1.91E-02
145	GO:0009646: response to absence of light	1.91E-02
146	GO:0008654: phospholipid biosynthetic process	2.00E-02
147	GO:0006413: translational initiation	2.03E-02
148	GO:0000302: response to reactive oxygen species	2.10E-02
149	GO:0010193: response to ozone	2.10E-02
150	GO:0007264: small GTPase mediated signal transduction	2.20E-02
151	GO:0031047: gene silencing by RNA	2.20E-02
152	GO:0030163: protein catabolic process	2.31E-02
153	GO:1901657: glycosyl compound metabolic process	2.31E-02
154	GO:0006464: cellular protein modification process	2.41E-02
155	GO:0010286: heat acclimation	2.52E-02
156	GO:0010468: regulation of gene expression	2.60E-02
157	GO:0051607: defense response to virus	2.62E-02
158	GO:0042128: nitrate assimilation	2.95E-02
159	GO:0009416: response to light stimulus	3.05E-02
160	GO:0048481: plant ovule development	3.30E-02
161	GO:0000160: phosphorelay signal transduction system	3.42E-02
162	GO:0009910: negative regulation of flower development	3.66E-02
163	GO:0000724: double-strand break repair via homologous recombination	3.78E-02
164	GO:0009853: photorespiration	3.91E-02
165	GO:0009637: response to blue light	3.91E-02
166	GO:0034599: cellular response to oxidative stress	4.03E-02
167	GO:0055085: transmembrane transport	4.10E-02
168	GO:0080167: response to karrikin	4.17E-02
169	GO:0046686: response to cadmium ion	4.40E-02
170	GO:0046777: protein autophosphorylation	4.45E-02
171	GO:0010114: response to red light	4.68E-02
172	GO:0009744: response to sucrose	4.68E-02
173	GO:0045454: cell redox homeostasis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
2	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
3	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0015284: fructose uniporter activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0010307: acetylglutamate kinase regulator activity	0.00E+00
11	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.85E-06
12	GO:0016987: sigma factor activity	3.29E-05
13	GO:0001053: plastid sigma factor activity	3.29E-05
14	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.13E-04
15	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.13E-04
16	GO:0004008: copper-exporting ATPase activity	2.13E-04
17	GO:0004325: ferrochelatase activity	2.13E-04
18	GO:0051996: squalene synthase activity	2.13E-04
19	GO:0004830: tryptophan-tRNA ligase activity	2.13E-04
20	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	2.13E-04
21	GO:0030941: chloroplast targeting sequence binding	2.13E-04
22	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.13E-04
23	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.13E-04
24	GO:0008934: inositol monophosphate 1-phosphatase activity	4.76E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	4.76E-04
26	GO:0005353: fructose transmembrane transporter activity	4.76E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.76E-04
28	GO:0080041: ADP-ribose pyrophosphohydrolase activity	4.76E-04
29	GO:0004047: aminomethyltransferase activity	4.76E-04
30	GO:0052832: inositol monophosphate 3-phosphatase activity	4.76E-04
31	GO:0032947: protein complex scaffold	7.74E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	7.74E-04
33	GO:0050307: sucrose-phosphate phosphatase activity	7.74E-04
34	GO:0070402: NADPH binding	7.74E-04
35	GO:0004180: carboxypeptidase activity	7.74E-04
36	GO:0048027: mRNA 5'-UTR binding	1.10E-03
37	GO:0016149: translation release factor activity, codon specific	1.10E-03
38	GO:0016851: magnesium chelatase activity	1.10E-03
39	GO:0009882: blue light photoreceptor activity	1.10E-03
40	GO:0047627: adenylylsulfatase activity	1.10E-03
41	GO:0022891: substrate-specific transmembrane transporter activity	1.27E-03
42	GO:0043015: gamma-tubulin binding	1.47E-03
43	GO:0043495: protein anchor	1.47E-03
44	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.47E-03
45	GO:0005319: lipid transporter activity	1.47E-03
46	GO:0051861: glycolipid binding	1.47E-03
47	GO:0008233: peptidase activity	1.80E-03
48	GO:0010181: FMN binding	1.86E-03
49	GO:0051011: microtubule minus-end binding	1.87E-03
50	GO:0004623: phospholipase A2 activity	1.87E-03
51	GO:0004605: phosphatidate cytidylyltransferase activity	2.31E-03
52	GO:0015631: tubulin binding	2.77E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.77E-03
54	GO:0004559: alpha-mannosidase activity	2.77E-03
55	GO:0016168: chlorophyll binding	3.25E-03
56	GO:0008235: metalloexopeptidase activity	3.26E-03
57	GO:0019899: enzyme binding	3.26E-03
58	GO:0016491: oxidoreductase activity	3.34E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	3.78E-03
60	GO:0008236: serine-type peptidase activity	3.81E-03
61	GO:0005375: copper ion transmembrane transporter activity	4.33E-03
62	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.33E-03
63	GO:0071949: FAD binding	4.90E-03
64	GO:0003747: translation release factor activity	4.90E-03
65	GO:0005515: protein binding	5.06E-03
66	GO:0005381: iron ion transmembrane transporter activity	5.50E-03
67	GO:0045309: protein phosphorylated amino acid binding	5.50E-03
68	GO:0008168: methyltransferase activity	6.55E-03
69	GO:0019904: protein domain specific binding	6.77E-03
70	GO:0004177: aminopeptidase activity	6.77E-03
71	GO:0051537: 2 iron, 2 sulfur cluster binding	7.06E-03
72	GO:0000175: 3'-5'-exoribonuclease activity	8.13E-03
73	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	8.13E-03
74	GO:0031072: heat shock protein binding	8.13E-03
75	GO:0000155: phosphorelay sensor kinase activity	8.13E-03
76	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.80E-03
77	GO:0051119: sugar transmembrane transporter activity	9.58E-03
78	GO:0005528: FK506 binding	1.11E-02
79	GO:0001046: core promoter sequence-specific DNA binding	1.11E-02
80	GO:0051536: iron-sulfur cluster binding	1.11E-02
81	GO:0003954: NADH dehydrogenase activity	1.11E-02
82	GO:0004176: ATP-dependent peptidase activity	1.27E-02
83	GO:0016746: transferase activity, transferring acyl groups	1.29E-02
84	GO:0003924: GTPase activity	1.48E-02
85	GO:0003727: single-stranded RNA binding	1.53E-02
86	GO:0009055: electron carrier activity	1.62E-02
87	GO:0047134: protein-disulfide reductase activity	1.62E-02
88	GO:0004812: aminoacyl-tRNA ligase activity	1.62E-02
89	GO:0004791: thioredoxin-disulfide reductase activity	1.91E-02
90	GO:0016853: isomerase activity	1.91E-02
91	GO:0048038: quinone binding	2.10E-02
92	GO:0004518: nuclease activity	2.20E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.31E-02
94	GO:0005200: structural constituent of cytoskeleton	2.52E-02
95	GO:0003743: translation initiation factor activity	2.55E-02
96	GO:0042802: identical protein binding	2.77E-02
97	GO:0102483: scopolin beta-glucosidase activity	3.07E-02
98	GO:0000287: magnesium ion binding	3.31E-02
99	GO:0050897: cobalt ion binding	3.66E-02
100	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.66E-02
101	GO:0008422: beta-glucosidase activity	4.16E-02
102	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.78E-38
2	GO:0009535: chloroplast thylakoid membrane	1.25E-17
3	GO:0031969: chloroplast membrane	2.28E-08
4	GO:0009570: chloroplast stroma	1.28E-07
5	GO:0009941: chloroplast envelope	5.57E-07
6	GO:0009534: chloroplast thylakoid	3.08E-06
7	GO:0009536: plastid	4.60E-05
8	GO:0055035: plastid thylakoid membrane	5.28E-05
9	GO:0031977: thylakoid lumen	8.23E-05
10	GO:0009523: photosystem II	1.83E-04
11	GO:0009543: chloroplast thylakoid lumen	4.21E-04
12	GO:0009707: chloroplast outer membrane	4.71E-04
13	GO:0031304: intrinsic component of mitochondrial inner membrane	4.76E-04
14	GO:0008274: gamma-tubulin ring complex	4.76E-04
15	GO:0009528: plastid inner membrane	7.74E-04
16	GO:0010007: magnesium chelatase complex	7.74E-04
17	GO:0009654: photosystem II oxygen evolving complex	9.78E-04
18	GO:0042651: thylakoid membrane	9.78E-04
19	GO:0000923: equatorial microtubule organizing center	1.10E-03
20	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.47E-03
21	GO:0009526: plastid envelope	1.47E-03
22	GO:0030286: dynein complex	1.47E-03
23	GO:0009295: nucleoid	2.74E-03
24	GO:0031359: integral component of chloroplast outer membrane	3.26E-03
25	GO:0009539: photosystem II reaction center	4.33E-03
26	GO:0042644: chloroplast nucleoid	4.90E-03
27	GO:0000922: spindle pole	4.90E-03
28	GO:0009508: plastid chromosome	8.13E-03
29	GO:0005875: microtubule associated complex	1.03E-02
30	GO:0009579: thylakoid	1.05E-02
31	GO:0005747: mitochondrial respiratory chain complex I	1.08E-02
32	GO:0045271: respiratory chain complex I	1.19E-02
33	GO:0010287: plastoglobule	1.49E-02
34	GO:0005623: cell	1.62E-02
35	GO:0019898: extrinsic component of membrane	2.00E-02
36	GO:0005778: peroxisomal membrane	2.52E-02