GO Enrichment Analysis of Co-expressed Genes with
AT4G19006
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006489: dolichyl diphosphate biosynthetic process | 0.00E+00 |
| 2 | GO:0009264: deoxyribonucleotide catabolic process | 0.00E+00 |
| 3 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.24E-32 |
| 4 | GO:0030163: protein catabolic process | 2.32E-13 |
| 5 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.27E-08 |
| 6 | GO:0042176: regulation of protein catabolic process | 3.27E-08 |
| 7 | GO:0030433: ubiquitin-dependent ERAD pathway | 5.20E-08 |
| 8 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 6.13E-08 |
| 9 | GO:0034976: response to endoplasmic reticulum stress | 2.43E-06 |
| 10 | GO:0051603: proteolysis involved in cellular protein catabolic process | 5.90E-06 |
| 11 | GO:0046686: response to cadmium ion | 1.52E-05 |
| 12 | GO:0010043: response to zinc ion | 5.03E-05 |
| 13 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 5.94E-05 |
| 14 | GO:0006434: seryl-tRNA aminoacylation | 5.94E-05 |
| 15 | GO:0045859: regulation of protein kinase activity | 1.44E-04 |
| 16 | GO:0009156: ribonucleoside monophosphate biosynthetic process | 1.44E-04 |
| 17 | GO:0051788: response to misfolded protein | 1.44E-04 |
| 18 | GO:0006435: threonyl-tRNA aminoacylation | 1.44E-04 |
| 19 | GO:0045454: cell redox homeostasis | 1.59E-04 |
| 20 | GO:0055074: calcium ion homeostasis | 2.46E-04 |
| 21 | GO:0009647: skotomorphogenesis | 3.57E-04 |
| 22 | GO:0001676: long-chain fatty acid metabolic process | 3.57E-04 |
| 23 | GO:0009165: nucleotide biosynthetic process | 4.78E-04 |
| 24 | GO:0010363: regulation of plant-type hypersensitive response | 4.78E-04 |
| 25 | GO:0001731: formation of translation preinitiation complex | 7.40E-04 |
| 26 | GO:0043248: proteasome assembly | 7.40E-04 |
| 27 | GO:0006457: protein folding | 8.31E-04 |
| 28 | GO:0006458: 'de novo' protein folding | 8.82E-04 |
| 29 | GO:0000245: spliceosomal complex assembly | 8.82E-04 |
| 30 | GO:0009554: megasporogenesis | 8.82E-04 |
| 31 | GO:0045087: innate immune response | 9.27E-04 |
| 32 | GO:0007275: multicellular organism development | 1.02E-03 |
| 33 | GO:0048528: post-embryonic root development | 1.03E-03 |
| 34 | GO:0000338: protein deneddylation | 1.03E-03 |
| 35 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.18E-03 |
| 36 | GO:0009793: embryo development ending in seed dormancy | 1.35E-03 |
| 37 | GO:0030968: endoplasmic reticulum unfolded protein response | 1.35E-03 |
| 38 | GO:0043562: cellular response to nitrogen levels | 1.35E-03 |
| 39 | GO:0006002: fructose 6-phosphate metabolic process | 1.35E-03 |
| 40 | GO:0046685: response to arsenic-containing substance | 1.52E-03 |
| 41 | GO:0010449: root meristem growth | 1.69E-03 |
| 42 | GO:0043067: regulation of programmed cell death | 1.69E-03 |
| 43 | GO:0048229: gametophyte development | 2.07E-03 |
| 44 | GO:0009553: embryo sac development | 2.16E-03 |
| 45 | GO:0010102: lateral root morphogenesis | 2.47E-03 |
| 46 | GO:0009651: response to salt stress | 2.59E-03 |
| 47 | GO:0006446: regulation of translational initiation | 2.68E-03 |
| 48 | GO:0009735: response to cytokinin | 2.98E-03 |
| 49 | GO:0006487: protein N-linked glycosylation | 3.34E-03 |
| 50 | GO:0009116: nucleoside metabolic process | 3.34E-03 |
| 51 | GO:0015992: proton transport | 3.81E-03 |
| 52 | GO:0061077: chaperone-mediated protein folding | 3.81E-03 |
| 53 | GO:0008033: tRNA processing | 5.07E-03 |
| 54 | GO:0048868: pollen tube development | 5.34E-03 |
| 55 | GO:0048825: cotyledon development | 5.89E-03 |
| 56 | GO:0009556: microsporogenesis | 5.89E-03 |
| 57 | GO:0010193: response to ozone | 6.17E-03 |
| 58 | GO:0009567: double fertilization forming a zygote and endosperm | 7.05E-03 |
| 59 | GO:0016579: protein deubiquitination | 7.65E-03 |
| 60 | GO:0042128: nitrate assimilation | 8.60E-03 |
| 61 | GO:0016049: cell growth | 9.25E-03 |
| 62 | GO:0006631: fatty acid metabolic process | 1.28E-02 |
| 63 | GO:0008283: cell proliferation | 1.35E-02 |
| 64 | GO:0009744: response to sucrose | 1.35E-02 |
| 65 | GO:0009640: photomorphogenesis | 1.35E-02 |
| 66 | GO:0000209: protein polyubiquitination | 1.39E-02 |
| 67 | GO:0008643: carbohydrate transport | 1.43E-02 |
| 68 | GO:0009965: leaf morphogenesis | 1.47E-02 |
| 69 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 1.55E-02 |
| 70 | GO:0009736: cytokinin-activated signaling pathway | 1.67E-02 |
| 71 | GO:0009585: red, far-red light phototransduction | 1.67E-02 |
| 72 | GO:0006096: glycolytic process | 1.88E-02 |
| 73 | GO:0048316: seed development | 1.93E-02 |
| 74 | GO:0051726: regulation of cell cycle | 2.24E-02 |
| 75 | GO:0000398: mRNA splicing, via spliceosome | 2.38E-02 |
| 76 | GO:0009790: embryo development | 2.81E-02 |
| 77 | GO:0006633: fatty acid biosynthetic process | 2.97E-02 |
| 78 | GO:0006413: translational initiation | 3.02E-02 |
| 79 | GO:0048366: leaf development | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0055105: ubiquitin-protein transferase inhibitor activity | 0.00E+00 |
| 2 | GO:0004298: threonine-type endopeptidase activity | 2.08E-22 |
| 3 | GO:0008233: peptidase activity | 2.79E-15 |
| 4 | GO:0036402: proteasome-activating ATPase activity | 3.27E-08 |
| 5 | GO:0030234: enzyme regulator activity | 5.94E-07 |
| 6 | GO:0017025: TBP-class protein binding | 1.99E-06 |
| 7 | GO:0003756: protein disulfide isomerase activity | 6.61E-06 |
| 8 | GO:0016887: ATPase activity | 5.48E-05 |
| 9 | GO:0035614: snRNA stem-loop binding | 5.94E-05 |
| 10 | GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity | 5.94E-05 |
| 11 | GO:0004828: serine-tRNA ligase activity | 5.94E-05 |
| 12 | GO:0004679: AMP-activated protein kinase activity | 5.94E-05 |
| 13 | GO:1990381: ubiquitin-specific protease binding | 5.94E-05 |
| 14 | GO:0004829: threonine-tRNA ligase activity | 1.44E-04 |
| 15 | GO:0030619: U1 snRNA binding | 1.44E-04 |
| 16 | GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity | 1.44E-04 |
| 17 | GO:0051082: unfolded protein binding | 2.16E-04 |
| 18 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 2.46E-04 |
| 19 | GO:0008253: 5'-nucleotidase activity | 2.46E-04 |
| 20 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.46E-04 |
| 21 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 3.57E-04 |
| 22 | GO:0004749: ribose phosphate diphosphokinase activity | 3.57E-04 |
| 23 | GO:0005524: ATP binding | 3.85E-04 |
| 24 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 4.78E-04 |
| 25 | GO:0004523: RNA-DNA hybrid ribonuclease activity | 6.05E-04 |
| 26 | GO:0031369: translation initiation factor binding | 7.40E-04 |
| 27 | GO:0019887: protein kinase regulator activity | 8.82E-04 |
| 28 | GO:0102391: decanoate--CoA ligase activity | 8.82E-04 |
| 29 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.03E-03 |
| 30 | GO:0004427: inorganic diphosphatase activity | 1.03E-03 |
| 31 | GO:0003872: 6-phosphofructokinase activity | 1.03E-03 |
| 32 | GO:0044183: protein binding involved in protein folding | 2.07E-03 |
| 33 | GO:0004175: endopeptidase activity | 2.68E-03 |
| 34 | GO:0043130: ubiquitin binding | 3.34E-03 |
| 35 | GO:0003714: transcription corepressor activity | 3.34E-03 |
| 36 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 3.81E-03 |
| 37 | GO:0004540: ribonuclease activity | 3.81E-03 |
| 38 | GO:0003743: translation initiation factor activity | 4.44E-03 |
| 39 | GO:0008514: organic anion transmembrane transporter activity | 4.55E-03 |
| 40 | GO:0016853: isomerase activity | 5.61E-03 |
| 41 | GO:0010181: FMN binding | 5.61E-03 |
| 42 | GO:0050897: cobalt ion binding | 1.06E-02 |
| 43 | GO:0003746: translation elongation factor activity | 1.13E-02 |
| 44 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.24E-02 |
| 45 | GO:0008026: ATP-dependent helicase activity | 2.24E-02 |
| 46 | GO:0016829: lyase activity | 2.67E-02 |
| 47 | GO:0005515: protein binding | 2.91E-02 |
| 48 | GO:0000287: magnesium ion binding | 4.27E-02 |
| 49 | GO:0050660: flavin adenine dinucleotide binding | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 2 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 3 | GO:0000502: proteasome complex | 5.85E-53 |
| 4 | GO:0005839: proteasome core complex | 2.08E-22 |
| 5 | GO:0005829: cytosol | 5.70E-17 |
| 6 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.34E-16 |
| 7 | GO:0019773: proteasome core complex, alpha-subunit complex | 4.00E-15 |
| 8 | GO:0008540: proteasome regulatory particle, base subcomplex | 1.72E-14 |
| 9 | GO:0031595: nuclear proteasome complex | 4.97E-13 |
| 10 | GO:0031597: cytosolic proteasome complex | 5.83E-08 |
| 11 | GO:0005838: proteasome regulatory particle | 7.95E-07 |
| 12 | GO:0005737: cytoplasm | 4.11E-06 |
| 13 | GO:0005774: vacuolar membrane | 2.30E-05 |
| 14 | GO:0005788: endoplasmic reticulum lumen | 2.87E-05 |
| 15 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 5.94E-05 |
| 16 | GO:0000836: Hrd1p ubiquitin ligase complex | 5.94E-05 |
| 17 | GO:0044322: endoplasmic reticulum quality control compartment | 5.94E-05 |
| 18 | GO:0022626: cytosolic ribosome | 6.69E-05 |
| 19 | GO:0005853: eukaryotic translation elongation factor 1 complex | 2.46E-04 |
| 20 | GO:0046861: glyoxysomal membrane | 2.46E-04 |
| 21 | GO:0036513: Derlin-1 retrotranslocation complex | 3.57E-04 |
| 22 | GO:0009505: plant-type cell wall | 4.62E-04 |
| 23 | GO:0000813: ESCRT I complex | 6.05E-04 |
| 24 | GO:0016282: eukaryotic 43S preinitiation complex | 7.40E-04 |
| 25 | GO:0005634: nucleus | 7.83E-04 |
| 26 | GO:0033290: eukaryotic 48S preinitiation complex | 8.82E-04 |
| 27 | GO:0009506: plasmodesma | 9.61E-04 |
| 28 | GO:0000326: protein storage vacuole | 1.35E-03 |
| 29 | GO:0009514: glyoxysome | 1.35E-03 |
| 30 | GO:0008180: COP9 signalosome | 1.52E-03 |
| 31 | GO:0005685: U1 snRNP | 1.52E-03 |
| 32 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.07E-03 |
| 33 | GO:0005886: plasma membrane | 2.67E-03 |
| 34 | GO:0005783: endoplasmic reticulum | 2.71E-03 |
| 35 | GO:0005769: early endosome | 3.11E-03 |
| 36 | GO:0005618: cell wall | 3.47E-03 |
| 37 | GO:0016592: mediator complex | 6.46E-03 |
| 38 | GO:0005819: spindle | 1.20E-02 |
| 39 | GO:0005681: spliceosomal complex | 1.88E-02 |
| 40 | GO:0005747: mitochondrial respiratory chain complex I | 1.93E-02 |
| 41 | GO:0005773: vacuole | 2.02E-02 |
| 42 | GO:0009524: phragmoplast | 2.62E-02 |
| 43 | GO:0005759: mitochondrial matrix | 2.97E-02 |
| 44 | GO:0005802: trans-Golgi network | 3.06E-02 |
| 45 | GO:0009705: plant-type vacuole membrane | 3.17E-02 |
| 46 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.62E-02 |