co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G17460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:1902395: regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0015727: lactate transport	0.00E+00
5	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:0090706: specification of plant organ position	0.00E+00
9	GO:0045014: negative regulation of transcription by glucose	0.00E+00
10	GO:0010158: abaxial cell fate specification	5.04E-07
11	GO:1902183: regulation of shoot apical meristem development	6.16E-05
12	GO:0009944: polarity specification of adaxial/abaxial axis	6.42E-05
13	GO:0061077: chaperone-mediated protein folding	8.68E-05
14	GO:0005980: glycogen catabolic process	2.34E-04
15	GO:0000476: maturation of 4.5S rRNA	2.34E-04
16	GO:0000967: rRNA 5'-end processing	2.34E-04
17	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.34E-04
18	GO:0060261: positive regulation of transcription initiation from RNA polymerase II promoter	2.34E-04
19	GO:0015671: oxygen transport	2.34E-04
20	GO:0010480: microsporocyte differentiation	2.34E-04
21	GO:0010028: xanthophyll cycle	2.34E-04
22	GO:0010450: inflorescence meristem growth	2.34E-04
23	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.34E-04
24	GO:2000024: regulation of leaf development	3.13E-04
25	GO:0009773: photosynthetic electron transport in photosystem I	5.04E-04
26	GO:0018026: peptidyl-lysine monomethylation	5.20E-04
27	GO:0031648: protein destabilization	5.20E-04
28	GO:0016122: xanthophyll metabolic process	5.20E-04
29	GO:0006521: regulation of cellular amino acid metabolic process	5.20E-04
30	GO:0080181: lateral root branching	5.20E-04
31	GO:0034470: ncRNA processing	5.20E-04
32	GO:0005975: carbohydrate metabolic process	5.44E-04
33	GO:0015979: photosynthesis	5.87E-04
34	GO:0010628: positive regulation of gene expression	6.54E-04
35	GO:0009405: pathogenesis	8.44E-04
36	GO:0006954: inflammatory response	8.44E-04
37	GO:0005977: glycogen metabolic process	8.44E-04
38	GO:0045165: cell fate commitment	8.44E-04
39	GO:0048281: inflorescence morphogenesis	8.44E-04
40	GO:0045490: pectin catabolic process	8.47E-04
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.20E-03
42	GO:0010148: transpiration	1.20E-03
43	GO:0009650: UV protection	1.20E-03
44	GO:0010306: rhamnogalacturonan II biosynthetic process	1.20E-03
45	GO:1901332: negative regulation of lateral root development	1.20E-03
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.20E-03
47	GO:0007231: osmosensory signaling pathway	1.20E-03
48	GO:0010239: chloroplast mRNA processing	1.20E-03
49	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.33E-03
50	GO:0009664: plant-type cell wall organization	1.37E-03
51	GO:0006552: leucine catabolic process	1.61E-03
52	GO:0033500: carbohydrate homeostasis	1.61E-03
53	GO:0010021: amylopectin biosynthetic process	1.61E-03
54	GO:0006109: regulation of carbohydrate metabolic process	1.61E-03
55	GO:0015994: chlorophyll metabolic process	1.61E-03
56	GO:0022622: root system development	1.61E-03
57	GO:0010154: fruit development	1.97E-03
58	GO:0046323: glucose import	1.97E-03
59	GO:0006465: signal peptide processing	2.05E-03
60	GO:1902456: regulation of stomatal opening	2.52E-03
61	GO:0042793: transcription from plastid promoter	2.52E-03
62	GO:0006596: polyamine biosynthetic process	2.52E-03
63	GO:0048759: xylem vessel member cell differentiation	2.52E-03
64	GO:0042549: photosystem II stabilization	2.52E-03
65	GO:0032502: developmental process	2.60E-03
66	GO:1901259: chloroplast rRNA processing	3.03E-03
67	GO:0070370: cellular heat acclimation	3.58E-03
68	GO:0022904: respiratory electron transport chain	3.58E-03
69	GO:0010103: stomatal complex morphogenesis	3.58E-03
70	GO:0032880: regulation of protein localization	3.58E-03
71	GO:0010050: vegetative phase change	3.58E-03
72	GO:0048437: floral organ development	3.58E-03
73	GO:0006353: DNA-templated transcription, termination	4.15E-03
74	GO:0009850: auxin metabolic process	4.15E-03
75	GO:0010492: maintenance of shoot apical meristem identity	4.15E-03
76	GO:0001558: regulation of cell growth	4.74E-03
77	GO:0010093: specification of floral organ identity	4.74E-03
78	GO:0009827: plant-type cell wall modification	4.74E-03
79	GO:0019432: triglyceride biosynthetic process	5.37E-03
80	GO:0051865: protein autoubiquitination	5.37E-03
81	GO:0048507: meristem development	5.37E-03
82	GO:0048589: developmental growth	5.37E-03
83	GO:0048829: root cap development	6.71E-03
84	GO:0006949: syncytium formation	6.71E-03
85	GO:0006631: fatty acid metabolic process	6.88E-03
86	GO:0019684: photosynthesis, light reaction	7.43E-03
87	GO:0009089: lysine biosynthetic process via diaminopimelate	7.43E-03
88	GO:0043085: positive regulation of catalytic activity	7.43E-03
89	GO:1903507: negative regulation of nucleic acid-templated transcription	7.43E-03
90	GO:0048229: gametophyte development	7.43E-03
91	GO:0010015: root morphogenesis	7.43E-03
92	GO:0006816: calcium ion transport	7.43E-03
93	GO:0009826: unidimensional cell growth	7.77E-03
94	GO:0009658: chloroplast organization	8.16E-03
95	GO:0010582: floral meristem determinacy	8.17E-03
96	GO:0010152: pollen maturation	8.17E-03
97	GO:0071365: cellular response to auxin stimulus	8.17E-03
98	GO:0018107: peptidyl-threonine phosphorylation	8.93E-03
99	GO:0010075: regulation of meristem growth	8.93E-03
100	GO:2000012: regulation of auxin polar transport	8.93E-03
101	GO:0009933: meristem structural organization	9.72E-03
102	GO:0010207: photosystem II assembly	9.72E-03
103	GO:0009266: response to temperature stimulus	9.72E-03
104	GO:0009934: regulation of meristem structural organization	9.72E-03
105	GO:0006302: double-strand break repair	9.72E-03
106	GO:0019853: L-ascorbic acid biosynthetic process	1.05E-02
107	GO:0010030: positive regulation of seed germination	1.05E-02
108	GO:0070588: calcium ion transmembrane transport	1.05E-02
109	GO:0007017: microtubule-based process	1.31E-02
110	GO:0051302: regulation of cell division	1.31E-02
111	GO:0009740: gibberellic acid mediated signaling pathway	1.35E-02
112	GO:0051321: meiotic cell cycle	1.40E-02
113	GO:0003333: amino acid transmembrane transport	1.40E-02
114	GO:0048511: rhythmic process	1.40E-02
115	GO:0035428: hexose transmembrane transport	1.50E-02
116	GO:0019748: secondary metabolic process	1.50E-02
117	GO:0030245: cellulose catabolic process	1.50E-02
118	GO:0009686: gibberellin biosynthetic process	1.59E-02
119	GO:0009411: response to UV	1.59E-02
120	GO:0071369: cellular response to ethylene stimulus	1.59E-02
121	GO:0001944: vasculature development	1.59E-02
122	GO:0006012: galactose metabolic process	1.59E-02
123	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.59E-02
124	GO:0006810: transport	1.68E-02
125	GO:0006355: regulation of transcription, DNA-templated	1.68E-02
126	GO:0006284: base-excision repair	1.69E-02
127	GO:0048443: stamen development	1.69E-02
128	GO:0008284: positive regulation of cell proliferation	1.79E-02
129	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.79E-02
130	GO:0010087: phloem or xylem histogenesis	1.89E-02
131	GO:0048653: anther development	1.89E-02
132	GO:0042631: cellular response to water deprivation	1.89E-02
133	GO:0009958: positive gravitropism	1.99E-02
134	GO:0006520: cellular amino acid metabolic process	1.99E-02
135	GO:0006662: glycerol ether metabolic process	1.99E-02
136	GO:0048868: pollen tube development	1.99E-02
137	GO:0009741: response to brassinosteroid	1.99E-02
138	GO:0042752: regulation of circadian rhythm	2.10E-02
139	GO:0009646: response to absence of light	2.10E-02
140	GO:0019252: starch biosynthetic process	2.20E-02
141	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.31E-02
142	GO:0010583: response to cyclopentenone	2.42E-02
143	GO:0071281: cellular response to iron ion	2.54E-02
144	GO:1901657: glycosyl compound metabolic process	2.54E-02
145	GO:0009828: plant-type cell wall loosening	2.65E-02
146	GO:0009567: double fertilization forming a zygote and endosperm	2.65E-02
147	GO:0009734: auxin-activated signaling pathway	2.71E-02
148	GO:0001666: response to hypoxia	3.01E-02
149	GO:0010027: thylakoid membrane organization	3.01E-02
150	GO:0007165: signal transduction	3.03E-02
151	GO:0009607: response to biotic stimulus	3.13E-02
152	GO:0009735: response to cytokinin	3.23E-02
153	GO:0009627: systemic acquired resistance	3.25E-02
154	GO:0009733: response to auxin	3.33E-02
155	GO:0015995: chlorophyll biosynthetic process	3.38E-02
156	GO:0016311: dephosphorylation	3.50E-02
157	GO:0006499: N-terminal protein myristoylation	3.89E-02
158	GO:0010218: response to far red light	3.89E-02
159	GO:0009631: cold acclimation	4.03E-02
160	GO:0048527: lateral root development	4.03E-02
161	GO:0006865: amino acid transport	4.16E-02
162	GO:0009409: response to cold	4.36E-02
163	GO:0034599: cellular response to oxidative stress	4.43E-02
164	GO:0080167: response to karrikin	4.76E-02
165	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010487: thermospermine synthase activity	0.00E+00
2	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
3	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0048039: ubiquinone binding	0.00E+00
5	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
8	GO:0015129: lactate transmembrane transporter activity	0.00E+00
9	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
10	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
11	GO:0030570: pectate lyase activity	4.24E-06
12	GO:0004645: phosphorylase activity	2.34E-04
13	GO:0016768: spermine synthase activity	2.34E-04
14	GO:0005344: oxygen transporter activity	2.34E-04
15	GO:0008184: glycogen phosphorylase activity	2.34E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.34E-04
17	GO:0019156: isoamylase activity	5.20E-04
18	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.20E-04
19	GO:0016868: intramolecular transferase activity, phosphotransferases	5.20E-04
20	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.20E-04
21	GO:0016829: lyase activity	5.85E-04
22	GO:0004565: beta-galactosidase activity	6.54E-04
23	GO:0090729: toxin activity	8.44E-04
24	GO:0005528: FK506 binding	1.01E-03
25	GO:0016851: magnesium chelatase activity	1.20E-03
26	GO:0005354: galactose transmembrane transporter activity	1.20E-03
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.25E-03
28	GO:0019199: transmembrane receptor protein kinase activity	1.61E-03
29	GO:0042277: peptide binding	1.61E-03
30	GO:0016279: protein-lysine N-methyltransferase activity	1.61E-03
31	GO:0010011: auxin binding	1.61E-03
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.61E-03
33	GO:0010328: auxin influx transmembrane transporter activity	1.61E-03
34	GO:0008725: DNA-3-methyladenine glycosylase activity	2.05E-03
35	GO:0005355: glucose transmembrane transporter activity	2.12E-03
36	GO:0042578: phosphoric ester hydrolase activity	2.52E-03
37	GO:0004556: alpha-amylase activity	2.52E-03
38	GO:0004462: lactoylglutathione lyase activity	2.52E-03
39	GO:0051920: peroxiredoxin activity	3.03E-03
40	GO:0004033: aldo-keto reductase (NADP) activity	4.15E-03
41	GO:0005337: nucleoside transmembrane transporter activity	4.15E-03
42	GO:0016209: antioxidant activity	4.15E-03
43	GO:0008047: enzyme activator activity	6.71E-03
44	GO:0015020: glucuronosyltransferase activity	6.71E-03
45	GO:0044183: protein binding involved in protein folding	7.43E-03
46	GO:0004185: serine-type carboxypeptidase activity	7.46E-03
47	GO:0051537: 2 iron, 2 sulfur cluster binding	8.08E-03
48	GO:0004521: endoribonuclease activity	8.17E-03
49	GO:0005262: calcium channel activity	8.93E-03
50	GO:0008083: growth factor activity	9.72E-03
51	GO:0003714: transcription corepressor activity	1.22E-02
52	GO:0004857: enzyme inhibitor activity	1.22E-02
53	GO:0033612: receptor serine/threonine kinase binding	1.40E-02
54	GO:0008408: 3'-5' exonuclease activity	1.40E-02
55	GO:0008810: cellulase activity	1.59E-02
56	GO:0022891: substrate-specific transmembrane transporter activity	1.59E-02
57	GO:0003727: single-stranded RNA binding	1.69E-02
58	GO:0047134: protein-disulfide reductase activity	1.79E-02
59	GO:0003713: transcription coactivator activity	1.99E-02
60	GO:0008536: Ran GTPase binding	1.99E-02
61	GO:0004252: serine-type endopeptidase activity	2.00E-02
62	GO:0004791: thioredoxin-disulfide reductase activity	2.10E-02
63	GO:0015144: carbohydrate transmembrane transporter activity	2.16E-02
64	GO:0048038: quinone binding	2.31E-02
65	GO:0005351: sugar:proton symporter activity	2.43E-02
66	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.54E-02
67	GO:0005200: structural constituent of cytoskeleton	2.77E-02
68	GO:0016597: amino acid binding	2.89E-02
69	GO:0015250: water channel activity	3.01E-02
70	GO:0102483: scopolin beta-glucosidase activity	3.38E-02
71	GO:0008236: serine-type peptidase activity	3.50E-02
72	GO:0005096: GTPase activator activity	3.76E-02
73	GO:0030145: manganese ion binding	4.03E-02
74	GO:0003993: acid phosphatase activity	4.43E-02
75	GO:0008422: beta-glucosidase activity	4.57E-02
76	GO:0005515: protein binding	4.60E-02
77	GO:0051539: 4 iron, 4 sulfur cluster binding	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0009507: chloroplast	3.21E-07
5	GO:0009534: chloroplast thylakoid	5.27E-06
6	GO:0009543: chloroplast thylakoid lumen	6.59E-05
7	GO:0009535: chloroplast thylakoid membrane	1.22E-04
8	GO:0009538: photosystem I reaction center	2.09E-04
9	GO:0009579: thylakoid	2.12E-04
10	GO:0005787: signal peptidase complex	2.34E-04
11	GO:0000791: euchromatin	2.34E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.13E-04
13	GO:0009570: chloroplast stroma	4.04E-04
14	GO:0030870: Mre11 complex	5.20E-04
15	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.20E-04
16	GO:0030095: chloroplast photosystem II	7.36E-04
17	GO:0010007: magnesium chelatase complex	8.44E-04
18	GO:0009531: secondary cell wall	1.20E-03
19	GO:0000795: synaptonemal complex	2.05E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	3.03E-03
21	GO:0010319: stromule	3.12E-03
22	GO:0031305: integral component of mitochondrial inner membrane	4.15E-03
23	GO:0045298: tubulin complex	5.37E-03
24	GO:0055028: cortical microtubule	6.71E-03
25	GO:0005740: mitochondrial envelope	6.71E-03
26	GO:0009508: plastid chromosome	8.93E-03
27	GO:0005874: microtubule	1.03E-02
28	GO:0009654: photosystem II oxygen evolving complex	1.31E-02
29	GO:0009532: plastid stroma	1.40E-02
30	GO:0005576: extracellular region	1.80E-02
31	GO:0019898: extrinsic component of membrane	2.20E-02
32	GO:0000785: chromatin	2.42E-02
33	GO:0009295: nucleoid	2.77E-02
34	GO:0048046: apoplast	3.06E-02
35	GO:0005667: transcription factor complex	3.25E-02
36	GO:0009505: plant-type cell wall	3.91E-02
37	GO:0031977: thylakoid lumen	4.85E-02
38	GO:0009941: chloroplast envelope	4.88E-02