Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G17390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:0090239: regulation of histone H4 acetylation0.00E+00
5GO:0000740: nuclear membrane fusion0.00E+00
6GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
7GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
8GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
9GO:0046487: glyoxylate metabolic process0.00E+00
10GO:0006412: translation1.49E-160
11GO:0042254: ribosome biogenesis3.26E-64
12GO:0000027: ribosomal large subunit assembly2.30E-13
13GO:0000028: ribosomal small subunit assembly1.28E-08
14GO:0006626: protein targeting to mitochondrion1.56E-05
15GO:0009735: response to cytokinin1.85E-05
16GO:0009955: adaxial/abaxial pattern specification2.20E-05
17GO:1902626: assembly of large subunit precursor of preribosome5.75E-05
18GO:0002181: cytoplasmic translation5.75E-05
19GO:0006414: translational elongation1.28E-04
20GO:0009651: response to salt stress1.93E-04
21GO:0000398: mRNA splicing, via spliceosome2.06E-04
22GO:0006820: anion transport2.32E-04
23GO:0043248: proteasome assembly4.33E-04
24GO:0051603: proteolysis involved in cellular protein catabolic process4.38E-04
25GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.37E-04
26GO:0018002: N-terminal peptidyl-glutamic acid acetylation6.37E-04
27GO:0032365: intracellular lipid transport6.37E-04
28GO:0006407: rRNA export from nucleus6.37E-04
29GO:1990258: histone glutamine methylation6.37E-04
30GO:0006475: internal protein amino acid acetylation6.37E-04
31GO:0015801: aromatic amino acid transport6.37E-04
32GO:0017198: N-terminal peptidyl-serine acetylation6.37E-04
33GO:0030490: maturation of SSU-rRNA6.37E-04
34GO:2001006: regulation of cellulose biosynthetic process6.37E-04
35GO:0000494: box C/D snoRNA 3'-end processing6.37E-04
36GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.37E-04
37GO:0009793: embryo development ending in seed dormancy7.70E-04
38GO:0006511: ubiquitin-dependent protein catabolic process9.91E-04
39GO:0009245: lipid A biosynthetic process1.33E-03
40GO:0098656: anion transmembrane transport1.33E-03
41GO:0009967: positive regulation of signal transduction1.37E-03
42GO:0051788: response to misfolded protein1.37E-03
43GO:0015786: UDP-glucose transport1.37E-03
44GO:0006432: phenylalanyl-tRNA aminoacylation1.37E-03
45GO:0071668: plant-type cell wall assembly1.37E-03
46GO:0045041: protein import into mitochondrial intermembrane space1.37E-03
47GO:0048569: post-embryonic animal organ development1.37E-03
48GO:0043981: histone H4-K5 acetylation1.37E-03
49GO:0010198: synergid death1.37E-03
50GO:0046686: response to cadmium ion1.38E-03
51GO:0000387: spliceosomal snRNP assembly1.57E-03
52GO:1904278: positive regulation of wax biosynthetic process2.26E-03
53GO:0009150: purine ribonucleotide metabolic process2.26E-03
54GO:0045793: positive regulation of cell size2.26E-03
55GO:0015783: GDP-fucose transport2.26E-03
56GO:0034227: tRNA thio-modification2.26E-03
57GO:0042256: mature ribosome assembly2.26E-03
58GO:0090506: axillary shoot meristem initiation2.26E-03
59GO:0010452: histone H3-K36 methylation2.26E-03
60GO:0006446: regulation of translational initiation3.14E-03
61GO:0006241: CTP biosynthetic process3.28E-03
62GO:0072334: UDP-galactose transmembrane transport3.28E-03
63GO:0009647: skotomorphogenesis3.28E-03
64GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.28E-03
65GO:0006165: nucleoside diphosphate phosphorylation3.28E-03
66GO:0006228: UTP biosynthetic process3.28E-03
67GO:0006164: purine nucleotide biosynthetic process3.28E-03
68GO:0006168: adenine salvage3.28E-03
69GO:0009558: embryo sac cellularization3.28E-03
70GO:0032877: positive regulation of DNA endoreduplication3.28E-03
71GO:0046836: glycolipid transport3.28E-03
72GO:0006166: purine ribonucleoside salvage3.28E-03
73GO:0070301: cellular response to hydrogen peroxide3.28E-03
74GO:0051085: chaperone mediated protein folding requiring cofactor3.28E-03
75GO:0030150: protein import into mitochondrial matrix4.36E-03
76GO:0006289: nucleotide-excision repair4.36E-03
77GO:0009116: nucleoside metabolic process4.36E-03
78GO:0006183: GTP biosynthetic process4.43E-03
79GO:0010363: regulation of plant-type hypersensitive response4.43E-03
80GO:2000032: regulation of secondary shoot formation4.43E-03
81GO:0009165: nucleotide biosynthetic process4.43E-03
82GO:1900864: mitochondrial RNA modification4.43E-03
83GO:0051781: positive regulation of cell division4.43E-03
84GO:0042274: ribosomal small subunit biogenesis4.43E-03
85GO:0061077: chaperone-mediated protein folding5.30E-03
86GO:0071493: cellular response to UV-B5.69E-03
87GO:0031167: rRNA methylation5.69E-03
88GO:1902183: regulation of shoot apical meristem development5.69E-03
89GO:0044209: AMP salvage5.69E-03
90GO:0008283: cell proliferation6.83E-03
91GO:0045040: protein import into mitochondrial outer membrane7.06E-03
92GO:0001731: formation of translation preinitiation complex7.06E-03
93GO:0051568: histone H3-K4 methylation7.06E-03
94GO:0000470: maturation of LSU-rRNA7.06E-03
95GO:0009965: leaf morphogenesis7.94E-03
96GO:0000413: protein peptidyl-prolyl isomerization8.11E-03
97GO:1901001: negative regulation of response to salt stress8.54E-03
98GO:0000911: cytokinesis by cell plate formation8.54E-03
99GO:0042026: protein refolding8.54E-03
100GO:0006458: 'de novo' protein folding8.54E-03
101GO:0016444: somatic cell DNA recombination8.54E-03
102GO:0009648: photoperiodism8.54E-03
103GO:0006826: iron ion transport1.01E-02
104GO:0032880: regulation of protein localization1.01E-02
105GO:0048528: post-embryonic root development1.01E-02
106GO:0006635: fatty acid beta-oxidation1.08E-02
107GO:0009690: cytokinin metabolic process1.18E-02
108GO:0050821: protein stabilization1.18E-02
109GO:0031540: regulation of anthocyanin biosynthetic process1.18E-02
110GO:0001510: RNA methylation1.36E-02
111GO:0006526: arginine biosynthetic process1.36E-02
112GO:0044030: regulation of DNA methylation1.36E-02
113GO:0009808: lignin metabolic process1.36E-02
114GO:0009409: response to cold1.49E-02
115GO:0006189: 'de novo' IMP biosynthetic process1.54E-02
116GO:0048589: developmental growth1.54E-02
117GO:0009060: aerobic respiration1.54E-02
118GO:0015780: nucleotide-sugar transport1.54E-02
119GO:0045036: protein targeting to chloroplast1.94E-02
120GO:0016441: posttranscriptional gene silencing1.94E-02
121GO:0006913: nucleocytoplasmic transport2.15E-02
122GO:0015770: sucrose transport2.15E-02
123GO:0010015: root morphogenesis2.15E-02
124GO:0016925: protein sumoylation2.37E-02
125GO:0006790: sulfur compound metabolic process2.37E-02
126GO:0010043: response to zinc ion2.39E-02
127GO:0000724: double-strand break repair via homologous recombination2.50E-02
128GO:0010102: lateral root morphogenesis2.60E-02
129GO:2000028: regulation of photoperiodism, flowering2.60E-02
130GO:0048467: gynoecium development2.83E-02
131GO:0009908: flower development2.86E-02
132GO:0010039: response to iron ion3.07E-02
133GO:0015031: protein transport3.08E-02
134GO:0006406: mRNA export from nucleus3.57E-02
135GO:0006487: protein N-linked glycosylation3.57E-02
136GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.60E-02
137GO:0009644: response to high light intensity3.65E-02
138GO:0006306: DNA methylation4.10E-02
139GO:0003333: amino acid transmembrane transport4.10E-02
140GO:0051260: protein homooligomerization4.10E-02
141GO:0010431: seed maturation4.10E-02
142GO:0006334: nucleosome assembly4.10E-02
143GO:0016226: iron-sulfur cluster assembly4.37E-02
144GO:0007005: mitochondrion organization4.37E-02
145GO:0006364: rRNA processing4.53E-02
146GO:0071215: cellular response to abscisic acid stimulus4.65E-02
147GO:0040007: growth4.65E-02
148GO:0010584: pollen exine formation4.93E-02
RankGO TermAdjusted P value
1GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
2GO:0004055: argininosuccinate synthase activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
5GO:0003735: structural constituent of ribosome2.58E-205
6GO:0003729: mRNA binding4.68E-42
7GO:0019843: rRNA binding1.76E-17
8GO:0004298: threonine-type endopeptidase activity4.16E-11
9GO:0008233: peptidase activity2.47E-06
10GO:0015288: porin activity4.99E-05
11GO:0008308: voltage-gated anion channel activity6.95E-05
12GO:0008097: 5S rRNA binding1.21E-04
13GO:0031177: phosphopantetheine binding4.33E-04
14GO:0000035: acyl binding5.75E-04
15GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity6.19E-04
16GO:1990189: peptide-serine-N-acetyltransferase activity6.37E-04
17GO:0047326: inositol tetrakisphosphate 5-kinase activity6.37E-04
18GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.37E-04
19GO:1990190: peptide-glutamate-N-acetyltransferase activity6.37E-04
20GO:0005080: protein kinase C binding6.37E-04
21GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.37E-04
22GO:1990259: histone-glutamine methyltransferase activity6.37E-04
23GO:0035614: snRNA stem-loop binding6.37E-04
24GO:0016817: hydrolase activity, acting on acid anhydrides6.37E-04
25GO:0000824: inositol tetrakisphosphate 3-kinase activity6.37E-04
26GO:0003746: translation elongation factor activity8.91E-04
27GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.13E-04
28GO:0032934: sterol binding1.37E-03
29GO:0004826: phenylalanine-tRNA ligase activity1.37E-03
30GO:0005078: MAP-kinase scaffold activity1.37E-03
31GO:0030619: U1 snRNA binding1.37E-03
32GO:0015173: aromatic amino acid transmembrane transporter activity1.37E-03
33GO:0004750: ribulose-phosphate 3-epimerase activity1.37E-03
34GO:0001055: RNA polymerase II activity1.57E-03
35GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.66E-03
36GO:0001054: RNA polymerase I activity2.13E-03
37GO:0044183: protein binding involved in protein folding2.13E-03
38GO:0070181: small ribosomal subunit rRNA binding2.26E-03
39GO:0008649: rRNA methyltransferase activity2.26E-03
40GO:0005457: GDP-fucose transmembrane transporter activity2.26E-03
41GO:0070180: large ribosomal subunit rRNA binding2.26E-03
42GO:0001056: RNA polymerase III activity2.44E-03
43GO:0003723: RNA binding2.48E-03
44GO:0015266: protein channel activity2.78E-03
45GO:0003999: adenine phosphoribosyltransferase activity3.28E-03
46GO:0005460: UDP-glucose transmembrane transporter activity3.28E-03
47GO:0004550: nucleoside diphosphate kinase activity3.28E-03
48GO:0047627: adenylylsulfatase activity3.28E-03
49GO:0017089: glycolipid transporter activity3.28E-03
50GO:0004749: ribose phosphate diphosphokinase activity3.28E-03
51GO:0070628: proteasome binding4.43E-03
52GO:0004576: oligosaccharyl transferase activity4.43E-03
53GO:0010011: auxin binding4.43E-03
54GO:0051861: glycolipid binding4.43E-03
55GO:0005459: UDP-galactose transmembrane transporter activity5.69E-03
56GO:0004888: transmembrane signaling receptor activity5.69E-03
57GO:0005275: amine transmembrane transporter activity5.69E-03
58GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity5.69E-03
59GO:0031386: protein tag5.69E-03
60GO:0031593: polyubiquitin binding7.06E-03
61GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity7.06E-03
62GO:0051920: peroxiredoxin activity8.54E-03
63GO:0030515: snoRNA binding1.01E-02
64GO:0005338: nucleotide-sugar transmembrane transporter activity1.01E-02
65GO:0042162: telomeric DNA binding1.01E-02
66GO:0043022: ribosome binding1.18E-02
67GO:0016209: antioxidant activity1.18E-02
68GO:0051082: unfolded protein binding1.57E-02
69GO:0008515: sucrose transmembrane transporter activity2.15E-02
70GO:0004129: cytochrome-c oxidase activity2.15E-02
71GO:0008794: arsenate reductase (glutaredoxin) activity2.15E-02
72GO:0000049: tRNA binding2.37E-02
73GO:0031072: heat shock protein binding2.60E-02
74GO:0003697: single-stranded DNA binding2.62E-02
75GO:0051119: sugar transmembrane transporter activity3.07E-02
76GO:0005528: FK506 binding3.57E-02
77GO:0043130: ubiquitin binding3.57E-02
78GO:0004540: ribonuclease activity4.10E-02
79GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.53E-02
80GO:0008514: organic anion transmembrane transporter activity4.93E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0005675: holo TFIIH complex0.00E+00
4GO:0005840: ribosome2.73E-147
5GO:0022626: cytosolic ribosome5.82E-136
6GO:0022625: cytosolic large ribosomal subunit5.28E-127
7GO:0022627: cytosolic small ribosomal subunit1.92E-78
8GO:0005829: cytosol7.62E-53
9GO:0005737: cytoplasm2.10E-43
10GO:0005730: nucleolus3.28E-38
11GO:0009506: plasmodesma3.40E-25
12GO:0015934: large ribosomal subunit1.13E-20
13GO:0005774: vacuolar membrane2.15E-17
14GO:0005773: vacuole3.53E-13
15GO:0000502: proteasome complex2.93E-12
16GO:0005839: proteasome core complex4.16E-11
17GO:0016020: membrane5.68E-11
18GO:0015935: small ribosomal subunit2.12E-09
19GO:0009507: chloroplast5.04E-08
20GO:0005618: cell wall2.58E-07
21GO:0005886: plasma membrane2.53E-05
22GO:0005732: small nucleolar ribonucleoprotein complex2.57E-05
23GO:0005853: eukaryotic translation elongation factor 1 complex5.75E-05
24GO:0046930: pore complex6.95E-05
25GO:0019773: proteasome core complex, alpha-subunit complex6.95E-05
26GO:0019013: viral nucleocapsid2.78E-04
27GO:0030686: 90S preribosome6.37E-04
28GO:0005741: mitochondrial outer membrane6.55E-04
29GO:0005742: mitochondrial outer membrane translocase complex1.11E-03
30GO:0005685: U1 snRNP1.33E-03
31GO:0005736: DNA-directed RNA polymerase I complex1.33E-03
32GO:0031415: NatA complex1.37E-03
33GO:0005697: telomerase holoenzyme complex1.37E-03
34GO:0005666: DNA-directed RNA polymerase III complex1.57E-03
35GO:0071011: precatalytic spliceosome1.57E-03
36GO:0015030: Cajal body1.57E-03
37GO:0000418: DNA-directed RNA polymerase IV complex1.84E-03
38GO:0008541: proteasome regulatory particle, lid subcomplex2.13E-03
39GO:0071013: catalytic step 2 spliceosome2.13E-03
40GO:0048471: perinuclear region of cytoplasm2.13E-03
41GO:0034719: SMN-Sm protein complex2.26E-03
42GO:0000439: core TFIIH complex2.26E-03
43GO:0005665: DNA-directed RNA polymerase II, core complex2.44E-03
44GO:0005681: spliceosomal complex2.68E-03
45GO:1990726: Lsm1-7-Pat1 complex3.28E-03
46GO:0000419: DNA-directed RNA polymerase V complex3.93E-03
47GO:0005758: mitochondrial intermembrane space4.36E-03
48GO:0005682: U5 snRNP4.43E-03
49GO:0016593: Cdc73/Paf1 complex4.43E-03
50GO:0070469: respiratory chain4.82E-03
51GO:0008250: oligosaccharyltransferase complex5.69E-03
52GO:0005687: U4 snRNP5.69E-03
53GO:0097526: spliceosomal tri-snRNP complex5.69E-03
54GO:0005746: mitochondrial respiratory chain5.69E-03
55GO:0016282: eukaryotic 43S preinitiation complex7.06E-03
56GO:0031428: box C/D snoRNP complex7.06E-03
57GO:0005762: mitochondrial large ribosomal subunit8.54E-03
58GO:0033290: eukaryotic 48S preinitiation complex8.54E-03
59GO:0005689: U12-type spliceosomal complex8.54E-03
60GO:0016272: prefoldin complex8.54E-03
61GO:0071004: U2-type prespliceosome1.18E-02
62GO:0009536: plastid1.18E-02
63GO:0005688: U6 snRNP1.18E-02
64GO:0005834: heterotrimeric G-protein complex1.35E-02
65GO:0046540: U4/U6 x U5 tri-snRNP complex1.36E-02
66GO:0005788: endoplasmic reticulum lumen1.67E-02
67GO:0005686: U2 snRNP1.94E-02
68GO:0005852: eukaryotic translation initiation factor 3 complex2.15E-02
69GO:0031307: integral component of mitochondrial outer membrane2.37E-02
70GO:0032040: small-subunit processome2.37E-02
71GO:0009508: plastid chromosome2.60E-02
72GO:0005743: mitochondrial inner membrane3.52E-02
73GO:0045271: respiratory chain complex I3.83E-02
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Gene type



Gene DE type