co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G17370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007037: vacuolar phosphate transport	0.00E+00
2	GO:0046294: formaldehyde catabolic process	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:0048856: anatomical structure development	0.00E+00
8	GO:0016576: histone dephosphorylation	0.00E+00
9	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
10	GO:0006907: pinocytosis	0.00E+00
11	GO:0015739: sialic acid transport	0.00E+00
12	GO:0019685: photosynthesis, dark reaction	0.00E+00
13	GO:0009583: detection of light stimulus	0.00E+00
14	GO:0090470: shoot organ boundary specification	0.00E+00
15	GO:0080005: photosystem stoichiometry adjustment	5.06E-06
16	GO:0010343: singlet oxygen-mediated programmed cell death	5.06E-06
17	GO:2001141: regulation of RNA biosynthetic process	3.96E-05
18	GO:0016120: carotene biosynthetic process	1.11E-04
19	GO:0010117: photoprotection	1.11E-04
20	GO:0016123: xanthophyll biosynthetic process	1.11E-04
21	GO:0016117: carotenoid biosynthetic process	2.95E-04
22	GO:0019343: cysteine biosynthetic process via cystathionine	3.34E-04
23	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.34E-04
24	GO:0019346: transsulfuration	3.34E-04
25	GO:0034971: histone H3-R17 methylation	3.34E-04
26	GO:0072387: flavin adenine dinucleotide metabolic process	3.34E-04
27	GO:0071454: cellular response to anoxia	3.34E-04
28	GO:0071461: cellular response to redox state	3.34E-04
29	GO:0048438: floral whorl development	3.34E-04
30	GO:0034970: histone H3-R2 methylation	3.34E-04
31	GO:0010362: negative regulation of anion channel activity by blue light	3.34E-04
32	GO:0034972: histone H3-R26 methylation	3.34E-04
33	GO:0071266: 'de novo' L-methionine biosynthetic process	3.34E-04
34	GO:0071482: cellular response to light stimulus	4.36E-04
35	GO:0015780: nucleotide-sugar transport	5.24E-04
36	GO:1900426: positive regulation of defense response to bacterium	6.19E-04
37	GO:0009638: phototropism	6.19E-04
38	GO:0045036: protein targeting to chloroplast	7.22E-04
39	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	7.29E-04
40	GO:0010617: circadian regulation of calcium ion oscillation	7.29E-04
41	GO:0050688: regulation of defense response to virus	7.29E-04
42	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.29E-04
43	GO:0099402: plant organ development	7.29E-04
44	GO:0035335: peptidyl-tyrosine dephosphorylation	7.29E-04
45	GO:0016122: xanthophyll metabolic process	7.29E-04
46	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	7.29E-04
47	GO:0080153: negative regulation of reductive pentose-phosphate cycle	7.29E-04
48	GO:0080185: effector dependent induction by symbiont of host immune response	7.29E-04
49	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.29E-04
50	GO:1901529: positive regulation of anion channel activity	7.29E-04
51	GO:0048255: mRNA stabilization	7.29E-04
52	GO:0006352: DNA-templated transcription, initiation	8.32E-04
53	GO:0009767: photosynthetic electron transport chain	1.07E-03
54	GO:0006013: mannose metabolic process	1.18E-03
55	GO:1901672: positive regulation of systemic acquired resistance	1.18E-03
56	GO:0009150: purine ribonucleotide metabolic process	1.18E-03
57	GO:0071836: nectar secretion	1.18E-03
58	GO:0006696: ergosterol biosynthetic process	1.18E-03
59	GO:0045739: positive regulation of DNA repair	1.18E-03
60	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.18E-03
61	GO:1902448: positive regulation of shade avoidance	1.18E-03
62	GO:0007568: aging	1.28E-03
63	GO:0033014: tetrapyrrole biosynthetic process	1.70E-03
64	GO:1901332: negative regulation of lateral root development	1.70E-03
65	GO:0006882: cellular zinc ion homeostasis	1.70E-03
66	GO:0010371: regulation of gibberellin biosynthetic process	1.70E-03
67	GO:1902476: chloride transmembrane transport	1.70E-03
68	GO:0046653: tetrahydrofolate metabolic process	1.70E-03
69	GO:0007017: microtubule-based process	1.84E-03
70	GO:0009451: RNA modification	1.92E-03
71	GO:0006552: leucine catabolic process	2.28E-03
72	GO:0051567: histone H3-K9 methylation	2.28E-03
73	GO:1902347: response to strigolactone	2.28E-03
74	GO:0009902: chloroplast relocation	2.28E-03
75	GO:0034613: cellular protein localization	2.28E-03
76	GO:0042274: ribosomal small subunit biogenesis	2.28E-03
77	GO:0031935: regulation of chromatin silencing	2.28E-03
78	GO:0009765: photosynthesis, light harvesting	2.28E-03
79	GO:0000304: response to singlet oxygen	2.91E-03
80	GO:0046283: anthocyanin-containing compound metabolic process	2.91E-03
81	GO:0009616: virus induced gene silencing	2.91E-03
82	GO:0010118: stomatal movement	3.06E-03
83	GO:0009958: positive gravitropism	3.30E-03
84	GO:0060918: auxin transport	3.60E-03
85	GO:1901371: regulation of leaf morphogenesis	3.60E-03
86	GO:0010190: cytochrome b6f complex assembly	3.60E-03
87	GO:0000741: karyogamy	3.60E-03
88	GO:0016458: gene silencing	3.60E-03
89	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.60E-03
90	GO:0016070: RNA metabolic process	3.60E-03
91	GO:0006555: methionine metabolic process	3.60E-03
92	GO:0031053: primary miRNA processing	3.60E-03
93	GO:0045962: positive regulation of development, heterochronic	3.60E-03
94	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.33E-03
95	GO:0034389: lipid particle organization	4.33E-03
96	GO:0010076: maintenance of floral meristem identity	4.33E-03
97	GO:0010016: shoot system morphogenesis	4.33E-03
98	GO:0010019: chloroplast-nucleus signaling pathway	4.33E-03
99	GO:0010310: regulation of hydrogen peroxide metabolic process	4.33E-03
100	GO:0019509: L-methionine salvage from methylthioadenosine	4.33E-03
101	GO:0006821: chloride transport	5.11E-03
102	GO:0080111: DNA demethylation	5.11E-03
103	GO:0030026: cellular manganese ion homeostasis	5.11E-03
104	GO:0009396: folic acid-containing compound biosynthetic process	5.11E-03
105	GO:0051510: regulation of unidimensional cell growth	5.11E-03
106	GO:1900056: negative regulation of leaf senescence	5.11E-03
107	GO:0010050: vegetative phase change	5.11E-03
108	GO:0046777: protein autophosphorylation	5.57E-03
109	GO:0016126: sterol biosynthetic process	5.89E-03
110	GO:0030091: protein repair	5.94E-03
111	GO:0009704: de-etiolation	5.94E-03
112	GO:0006102: isocitrate metabolic process	5.94E-03
113	GO:0048564: photosystem I assembly	5.94E-03
114	GO:0045292: mRNA cis splicing, via spliceosome	5.94E-03
115	GO:0010928: regulation of auxin mediated signaling pathway	5.94E-03
116	GO:0044030: regulation of DNA methylation	6.81E-03
117	GO:0022900: electron transport chain	6.81E-03
118	GO:0018298: protein-chromophore linkage	7.70E-03
119	GO:0009821: alkaloid biosynthetic process	7.73E-03
120	GO:0019432: triglyceride biosynthetic process	7.73E-03
121	GO:0046916: cellular transition metal ion homeostasis	7.73E-03
122	GO:0006783: heme biosynthetic process	7.73E-03
123	GO:0098656: anion transmembrane transport	7.73E-03
124	GO:0006811: ion transport	8.49E-03
125	GO:0010380: regulation of chlorophyll biosynthetic process	8.68E-03
126	GO:0006779: porphyrin-containing compound biosynthetic process	8.68E-03
127	GO:0035999: tetrahydrofolate interconversion	8.68E-03
128	GO:0010267: production of ta-siRNAs involved in RNA interference	8.68E-03
129	GO:0009910: negative regulation of flower development	8.91E-03
130	GO:0010228: vegetative to reproductive phase transition of meristem	9.65E-03
131	GO:0055062: phosphate ion homeostasis	9.69E-03
132	GO:0009688: abscisic acid biosynthetic process	9.69E-03
133	GO:0009637: response to blue light	9.77E-03
134	GO:0008285: negative regulation of cell proliferation	1.07E-02
135	GO:0043085: positive regulation of catalytic activity	1.07E-02
136	GO:0006816: calcium ion transport	1.07E-02
137	GO:0010582: floral meristem determinacy	1.18E-02
138	GO:0006790: sulfur compound metabolic process	1.18E-02
139	GO:0009640: photomorphogenesis	1.26E-02
140	GO:0009744: response to sucrose	1.26E-02
141	GO:0009785: blue light signaling pathway	1.29E-02
142	GO:0010075: regulation of meristem growth	1.29E-02
143	GO:0009725: response to hormone	1.29E-02
144	GO:0005986: sucrose biosynthetic process	1.29E-02
145	GO:0008643: carbohydrate transport	1.37E-02
146	GO:0019253: reductive pentose-phosphate cycle	1.41E-02
147	GO:0009266: response to temperature stimulus	1.41E-02
148	GO:0034605: cellular response to heat	1.41E-02
149	GO:0006541: glutamine metabolic process	1.41E-02
150	GO:0009965: leaf morphogenesis	1.42E-02
151	GO:0009658: chloroplast organization	1.59E-02
152	GO:0010025: wax biosynthetic process	1.65E-02
153	GO:0006071: glycerol metabolic process	1.65E-02
154	GO:0000162: tryptophan biosynthetic process	1.65E-02
155	GO:0006289: nucleotide-excision repair	1.77E-02
156	GO:2000377: regulation of reactive oxygen species metabolic process	1.77E-02
157	GO:0010073: meristem maintenance	1.90E-02
158	GO:0048366: leaf development	1.95E-02
159	GO:0006306: DNA methylation	2.03E-02
160	GO:0016226: iron-sulfur cluster assembly	2.17E-02
161	GO:0006730: one-carbon metabolic process	2.17E-02
162	GO:0010227: floral organ abscission	2.31E-02
163	GO:0006284: base-excision repair	2.45E-02
164	GO:0070417: cellular response to cold	2.60E-02
165	GO:0010051: xylem and phloem pattern formation	2.74E-02
166	GO:0010087: phloem or xylem histogenesis	2.74E-02
167	GO:0010197: polar nucleus fusion	2.89E-02
168	GO:0042752: regulation of circadian rhythm	3.05E-02
169	GO:0009646: response to absence of light	3.05E-02
170	GO:0009851: auxin biosynthetic process	3.20E-02
171	GO:0009791: post-embryonic development	3.20E-02
172	GO:0009058: biosynthetic process	3.21E-02
173	GO:0007264: small GTPase mediated signal transduction	3.52E-02
174	GO:0030163: protein catabolic process	3.69E-02
175	GO:0006464: cellular protein modification process	3.85E-02
176	GO:0071805: potassium ion transmembrane transport	4.02E-02
177	GO:0006810: transport	4.05E-02
178	GO:0007623: circadian rhythm	4.19E-02
179	GO:0016579: protein deubiquitination	4.19E-02
180	GO:0051607: defense response to virus	4.19E-02
181	GO:0000910: cytokinesis	4.19E-02
182	GO:0009816: defense response to bacterium, incompatible interaction	4.54E-02
183	GO:0015995: chlorophyll biosynthetic process	4.90E-02
184	GO:0006950: response to stress	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0008170: N-methyltransferase activity	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0009008: DNA-methyltransferase activity	0.00E+00
11	GO:0045436: lycopene beta cyclase activity	0.00E+00
12	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
13	GO:0004848: ureidoglycolate hydrolase activity	1.79E-05
14	GO:0009882: blue light photoreceptor activity	3.96E-05
15	GO:0001053: plastid sigma factor activity	7.06E-05
16	GO:0016987: sigma factor activity	7.06E-05
17	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.83E-04
18	GO:0016783: sulfurtransferase activity	3.34E-04
19	GO:0004325: ferrochelatase activity	3.34E-04
20	GO:0004121: cystathionine beta-lyase activity	3.34E-04
21	GO:0051996: squalene synthase activity	3.34E-04
22	GO:0008242: omega peptidase activity	3.34E-04
23	GO:0030941: chloroplast targeting sequence binding	3.34E-04
24	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.34E-04
25	GO:0004485: methylcrotonoyl-CoA carboxylase activity	3.34E-04
26	GO:0004123: cystathionine gamma-lyase activity	3.34E-04
27	GO:0046906: tetrapyrrole binding	3.34E-04
28	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.34E-04
29	GO:0015085: calcium ion transmembrane transporter activity	3.34E-04
30	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	3.34E-04
31	GO:0071949: FAD binding	5.24E-04
32	GO:0004046: aminoacylase activity	7.29E-04
33	GO:0035241: protein-arginine omega-N monomethyltransferase activity	7.29E-04
34	GO:0034722: gamma-glutamyl-peptidase activity	7.29E-04
35	GO:0004450: isocitrate dehydrogenase (NADP+) activity	7.29E-04
36	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.29E-04
37	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	7.29E-04
38	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	7.29E-04
39	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	7.29E-04
40	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.29E-04
41	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	7.29E-04
42	GO:0032947: protein complex scaffold	1.18E-03
43	GO:0019003: GDP binding	1.18E-03
44	GO:0003962: cystathionine gamma-synthase activity	1.18E-03
45	GO:0000900: translation repressor activity, nucleic acid binding	1.18E-03
46	GO:0004075: biotin carboxylase activity	1.18E-03
47	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.18E-03
48	GO:0008469: histone-arginine N-methyltransferase activity	1.18E-03
49	GO:0004180: carboxypeptidase activity	1.18E-03
50	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.18E-03
51	GO:0046524: sucrose-phosphate synthase activity	1.18E-03
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.19E-03
53	GO:0004792: thiosulfate sulfurtransferase activity	1.70E-03
54	GO:0016851: magnesium chelatase activity	1.70E-03
55	GO:0000339: RNA cap binding	1.70E-03
56	GO:0047627: adenylylsulfatase activity	1.70E-03
57	GO:0000254: C-4 methylsterol oxidase activity	1.70E-03
58	GO:0004176: ATP-dependent peptidase activity	2.02E-03
59	GO:0052793: pectin acetylesterase activity	2.28E-03
60	GO:0005253: anion channel activity	2.28E-03
61	GO:0015368: calcium:cation antiporter activity	2.28E-03
62	GO:0004834: tryptophan synthase activity	2.28E-03
63	GO:0051861: glycolipid binding	2.28E-03
64	GO:0015369: calcium:proton antiporter activity	2.28E-03
65	GO:0005275: amine transmembrane transporter activity	2.91E-03
66	GO:0008080: N-acetyltransferase activity	3.30E-03
67	GO:0000293: ferric-chelate reductase activity	3.60E-03
68	GO:0005247: voltage-gated chloride channel activity	3.60E-03
69	GO:0016491: oxidoreductase activity	4.16E-03
70	GO:0022857: transmembrane transporter activity	4.20E-03
71	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.33E-03
72	GO:0004144: diacylglycerol O-acyltransferase activity	4.33E-03
73	GO:0004559: alpha-mannosidase activity	4.33E-03
74	GO:0016157: sucrose synthase activity	4.33E-03
75	GO:0004518: nuclease activity	4.35E-03
76	GO:0019899: enzyme binding	5.11E-03
77	GO:0016621: cinnamoyl-CoA reductase activity	5.11E-03
78	GO:0008237: metallopeptidase activity	5.25E-03
79	GO:0046914: transition metal ion binding	6.81E-03
80	GO:0004222: metalloendopeptidase activity	8.49E-03
81	GO:0003824: catalytic activity	8.55E-03
82	GO:0016844: strictosidine synthase activity	8.68E-03
83	GO:0004713: protein tyrosine kinase activity	9.69E-03
84	GO:0004519: endonuclease activity	1.03E-02
85	GO:0004129: cytochrome-c oxidase activity	1.07E-02
86	GO:0016787: hydrolase activity	1.18E-02
87	GO:0005315: inorganic phosphate transmembrane transporter activity	1.29E-02
88	GO:0031072: heat shock protein binding	1.29E-02
89	GO:0000155: phosphorelay sensor kinase activity	1.29E-02
90	GO:0008168: methyltransferase activity	1.51E-02
91	GO:0003887: DNA-directed DNA polymerase activity	1.65E-02
92	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.71E-02
93	GO:0051536: iron-sulfur cluster binding	1.77E-02
94	GO:0003777: microtubule motor activity	1.89E-02
95	GO:0015079: potassium ion transmembrane transporter activity	1.90E-02
96	GO:0008514: organic anion transmembrane transporter activity	2.45E-02
97	GO:0003713: transcription coactivator activity	2.89E-02
98	GO:0010181: FMN binding	3.05E-02
99	GO:0050662: coenzyme binding	3.05E-02
100	GO:0004872: receptor activity	3.20E-02
101	GO:0048038: quinone binding	3.36E-02
102	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.36E-02
103	GO:0008483: transaminase activity	4.02E-02
104	GO:0005351: sugar:proton symporter activity	4.10E-02
105	GO:0004806: triglyceride lipase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	3.69E-17
3	GO:0031969: chloroplast membrane	4.50E-06
4	GO:0030286: dynein complex	7.06E-05
5	GO:0009535: chloroplast thylakoid membrane	2.01E-04
6	GO:0005845: mRNA cap binding complex	3.34E-04
7	GO:0005846: nuclear cap binding complex	7.29E-04
8	GO:0016605: PML body	1.18E-03
9	GO:0005875: microtubule associated complex	1.50E-03
10	GO:0009517: PSII associated light-harvesting complex II	2.28E-03
11	GO:0055035: plastid thylakoid membrane	2.91E-03
12	GO:0034707: chloride channel complex	3.60E-03
13	GO:0030140: trans-Golgi network transport vesicle	3.60E-03
14	GO:0009840: chloroplastic endopeptidase Clp complex	4.33E-03
15	GO:0005655: nucleolar ribonuclease P complex	4.33E-03
16	GO:0031359: integral component of chloroplast outer membrane	5.11E-03
17	GO:0000123: histone acetyltransferase complex	5.11E-03
18	GO:0005811: lipid particle	6.81E-03
19	GO:0046930: pore complex	6.81E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.73E-03
21	GO:0016604: nuclear body	8.68E-03
22	GO:0048471: perinuclear region of cytoplasm	1.07E-02
23	GO:0043234: protein complex	1.65E-02
24	GO:0042651: thylakoid membrane	1.90E-02
25	GO:0009536: plastid	3.01E-02
26	GO:0005773: vacuole	3.47E-02
27	GO:0009705: plant-type vacuole membrane	4.19E-02