co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G16980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017012: protein-phytochromobilin linkage	0.00E+00
2	GO:0046294: formaldehyde catabolic process	0.00E+00
3	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0097164: ammonium ion metabolic process	0.00E+00
6	GO:0036172: thiamine salvage	0.00E+00
7	GO:0010202: response to low fluence red light stimulus	0.00E+00
8	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.23E-06
9	GO:0009649: entrainment of circadian clock	3.41E-05
10	GO:0009902: chloroplast relocation	3.41E-05
11	GO:0009903: chloroplast avoidance movement	1.11E-04
12	GO:0009585: red, far-red light phototransduction	1.71E-04
13	GO:1902265: abscisic acid homeostasis	2.18E-04
14	GO:0034971: histone H3-R17 methylation	2.18E-04
15	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.18E-04
16	GO:0034970: histone H3-R2 methylation	2.18E-04
17	GO:0051171: regulation of nitrogen compound metabolic process	2.18E-04
18	GO:0034972: histone H3-R26 methylation	2.18E-04
19	GO:0022900: electron transport chain	2.33E-04
20	GO:0016126: sterol biosynthetic process	3.47E-04
21	GO:0044419: interspecies interaction between organisms	4.86E-04
22	GO:0010617: circadian regulation of calcium ion oscillation	4.86E-04
23	GO:0070981: L-asparagine biosynthetic process	4.86E-04
24	GO:0007154: cell communication	4.86E-04
25	GO:0080183: response to photooxidative stress	4.86E-04
26	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.86E-04
27	GO:0043100: pyrimidine nucleobase salvage	4.86E-04
28	GO:0006529: asparagine biosynthetic process	4.86E-04
29	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.86E-04
30	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.86E-04
31	GO:0010343: singlet oxygen-mediated programmed cell death	4.86E-04
32	GO:1901562: response to paraquat	7.90E-04
33	GO:0009150: purine ribonucleotide metabolic process	7.90E-04
34	GO:0071492: cellular response to UV-A	7.90E-04
35	GO:0044375: regulation of peroxisome size	7.90E-04
36	GO:0031022: nuclear migration along microfilament	7.90E-04
37	GO:0009647: skotomorphogenesis	1.13E-03
38	GO:0009399: nitrogen fixation	1.13E-03
39	GO:0009113: purine nucleobase biosynthetic process	1.13E-03
40	GO:0010148: transpiration	1.13E-03
41	GO:0009963: positive regulation of flavonoid biosynthetic process	1.13E-03
42	GO:0010255: glucose mediated signaling pathway	1.13E-03
43	GO:0006882: cellular zinc ion homeostasis	1.13E-03
44	GO:0009584: detection of visible light	1.13E-03
45	GO:0051603: proteolysis involved in cellular protein catabolic process	1.37E-03
46	GO:0006749: glutathione metabolic process	1.50E-03
47	GO:0034613: cellular protein localization	1.50E-03
48	GO:0006542: glutamine biosynthetic process	1.50E-03
49	GO:0009687: abscisic acid metabolic process	1.50E-03
50	GO:0070534: protein K63-linked ubiquitination	1.50E-03
51	GO:0071486: cellular response to high light intensity	1.50E-03
52	GO:0009765: photosynthesis, light harvesting	1.50E-03
53	GO:0000304: response to singlet oxygen	1.91E-03
54	GO:0016120: carotene biosynthetic process	1.91E-03
55	GO:0046283: anthocyanin-containing compound metabolic process	1.91E-03
56	GO:0009904: chloroplast accumulation movement	1.91E-03
57	GO:0010236: plastoquinone biosynthetic process	1.91E-03
58	GO:0009229: thiamine diphosphate biosynthetic process	1.91E-03
59	GO:0080167: response to karrikin	1.93E-03
60	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.04E-03
61	GO:0006796: phosphate-containing compound metabolic process	2.35E-03
62	GO:0009228: thiamine biosynthetic process	2.35E-03
63	GO:0009117: nucleotide metabolic process	2.35E-03
64	GO:0006301: postreplication repair	2.35E-03
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.35E-03
66	GO:0006555: methionine metabolic process	2.35E-03
67	GO:0070814: hydrogen sulfide biosynthetic process	2.35E-03
68	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.83E-03
69	GO:0034389: lipid particle organization	2.83E-03
70	GO:0017148: negative regulation of translation	2.83E-03
71	GO:0010019: chloroplast-nucleus signaling pathway	2.83E-03
72	GO:0019509: L-methionine salvage from methylthioadenosine	2.83E-03
73	GO:0030026: cellular manganese ion homeostasis	3.33E-03
74	GO:0009396: folic acid-containing compound biosynthetic process	3.33E-03
75	GO:0010374: stomatal complex development	3.33E-03
76	GO:0010161: red light signaling pathway	3.33E-03
77	GO:0010029: regulation of seed germination	3.35E-03
78	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.86E-03
79	GO:0030091: protein repair	3.86E-03
80	GO:0009704: de-etiolation	3.86E-03
81	GO:0009231: riboflavin biosynthetic process	3.86E-03
82	GO:0016559: peroxisome fission	3.86E-03
83	GO:0007155: cell adhesion	3.86E-03
84	GO:0007623: circadian rhythm	4.10E-03
85	GO:0019430: removal of superoxide radicals	4.42E-03
86	GO:0010100: negative regulation of photomorphogenesis	4.42E-03
87	GO:0006526: arginine biosynthetic process	4.42E-03
88	GO:0032544: plastid translation	4.42E-03
89	GO:0015996: chlorophyll catabolic process	4.42E-03
90	GO:0019432: triglyceride biosynthetic process	5.00E-03
91	GO:0046916: cellular transition metal ion homeostasis	5.00E-03
92	GO:0015780: nucleotide-sugar transport	5.00E-03
93	GO:0009637: response to blue light	5.22E-03
94	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.62E-03
95	GO:0010380: regulation of chlorophyll biosynthetic process	5.62E-03
96	GO:0009638: phototropism	5.62E-03
97	GO:0035999: tetrahydrofolate interconversion	5.62E-03
98	GO:0009098: leucine biosynthetic process	5.62E-03
99	GO:0055062: phosphate ion homeostasis	6.25E-03
100	GO:0006325: chromatin organization	6.25E-03
101	GO:0000103: sulfate assimilation	6.25E-03
102	GO:0045036: protein targeting to chloroplast	6.25E-03
103	GO:0009641: shade avoidance	6.25E-03
104	GO:0010192: mucilage biosynthetic process	6.25E-03
105	GO:0051555: flavonol biosynthetic process	6.25E-03
106	GO:0009970: cellular response to sulfate starvation	6.25E-03
107	GO:0006508: proteolysis	6.60E-03
108	GO:0009640: photomorphogenesis	6.73E-03
109	GO:0043085: positive regulation of catalytic activity	6.91E-03
110	GO:0018119: peptidyl-cysteine S-nitrosylation	6.91E-03
111	GO:0006816: calcium ion transport	6.91E-03
112	GO:0006790: sulfur compound metabolic process	7.60E-03
113	GO:0030048: actin filament-based movement	8.30E-03
114	GO:0006108: malate metabolic process	8.30E-03
115	GO:2000028: regulation of photoperiodism, flowering	8.30E-03
116	GO:0050826: response to freezing	8.30E-03
117	GO:0009718: anthocyanin-containing compound biosynthetic process	8.30E-03
118	GO:0006541: glutamine metabolic process	9.03E-03
119	GO:0009266: response to temperature stimulus	9.03E-03
120	GO:0007031: peroxisome organization	9.79E-03
121	GO:0009825: multidimensional cell growth	9.79E-03
122	GO:0006071: glycerol metabolic process	1.06E-02
123	GO:0010187: negative regulation of seed germination	1.14E-02
124	GO:0051017: actin filament bundle assembly	1.14E-02
125	GO:0008299: isoprenoid biosynthetic process	1.22E-02
126	GO:0019915: lipid storage	1.30E-02
127	GO:0009693: ethylene biosynthetic process	1.48E-02
128	GO:0006012: galactose metabolic process	1.48E-02
129	GO:0016117: carotenoid biosynthetic process	1.66E-02
130	GO:0042391: regulation of membrane potential	1.75E-02
131	GO:0080022: primary root development	1.75E-02
132	GO:0006520: cellular amino acid metabolic process	1.85E-02
133	GO:0009646: response to absence of light	1.95E-02
134	GO:0006468: protein phosphorylation	1.96E-02
135	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.15E-02
136	GO:0019761: glucosinolate biosynthetic process	2.25E-02
137	GO:0009630: gravitropism	2.25E-02
138	GO:1901657: glycosyl compound metabolic process	2.36E-02
139	GO:0030163: protein catabolic process	2.36E-02
140	GO:0006464: cellular protein modification process	2.46E-02
141	GO:0042128: nitrate assimilation	3.02E-02
142	GO:0015995: chlorophyll biosynthetic process	3.14E-02
143	GO:0010411: xyloglucan metabolic process	3.14E-02
144	GO:0048573: photoperiodism, flowering	3.14E-02
145	GO:0030244: cellulose biosynthetic process	3.37E-02
146	GO:0018298: protein-chromophore linkage	3.37E-02
147	GO:0000160: phosphorelay signal transduction system	3.49E-02
148	GO:0009407: toxin catabolic process	3.62E-02
149	GO:0010218: response to far red light	3.62E-02
150	GO:0010119: regulation of stomatal movement	3.74E-02
151	GO:0009631: cold acclimation	3.74E-02
152	GO:0010043: response to zinc ion	3.74E-02
153	GO:0007568: aging	3.74E-02
154	GO:0009910: negative regulation of flower development	3.74E-02
155	GO:0009409: response to cold	3.76E-02
156	GO:0009867: jasmonic acid mediated signaling pathway	3.99E-02
157	GO:0006099: tricarboxylic acid cycle	4.12E-02
158	GO:0030001: metal ion transport	4.38E-02
159	GO:0005975: carbohydrate metabolic process	4.43E-02
160	GO:0046777: protein autophosphorylation	4.59E-02
161	GO:0046686: response to cadmium ion	4.60E-02
162	GO:0015979: photosynthesis	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
2	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
3	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
4	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
5	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
6	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
7	GO:0031517: red light photoreceptor activity	0.00E+00
8	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
9	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
10	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
11	GO:0045436: lycopene beta cyclase activity	0.00E+00
12	GO:0000254: C-4 methylsterol oxidase activity	6.27E-08
13	GO:0004848: ureidoglycolate hydrolase activity	8.14E-06
14	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.87E-05
15	GO:0004185: serine-type carboxypeptidase activity	1.01E-04
16	GO:0042802: identical protein binding	1.73E-04
17	GO:0004071: aspartate-ammonia ligase activity	2.18E-04
18	GO:1990841: promoter-specific chromatin binding	2.18E-04
19	GO:0016783: sulfurtransferase activity	2.18E-04
20	GO:0010313: phytochrome binding	2.18E-04
21	GO:0004328: formamidase activity	2.18E-04
22	GO:0031516: far-red light photoreceptor activity	2.18E-04
23	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.18E-04
24	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.18E-04
25	GO:0046480: galactolipid galactosyltransferase activity	2.18E-04
26	GO:0046906: tetrapyrrole binding	2.18E-04
27	GO:0080079: cellobiose glucosidase activity	2.18E-04
28	GO:0015085: calcium ion transmembrane transporter activity	2.18E-04
29	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.18E-04
30	GO:0004046: aminoacylase activity	4.86E-04
31	GO:0004329: formate-tetrahydrofolate ligase activity	4.86E-04
32	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.86E-04
33	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	4.86E-04
34	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.86E-04
35	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.86E-04
36	GO:0009883: red or far-red light photoreceptor activity	4.86E-04
37	GO:0043425: bHLH transcription factor binding	4.86E-04
38	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.86E-04
39	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.86E-04
40	GO:0050347: trans-octaprenyltranstransferase activity	4.86E-04
41	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.86E-04
42	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.86E-04
43	GO:0003861: 3-isopropylmalate dehydratase activity	7.90E-04
44	GO:0003935: GTP cyclohydrolase II activity	7.90E-04
45	GO:0008020: G-protein coupled photoreceptor activity	7.90E-04
46	GO:0004781: sulfate adenylyltransferase (ATP) activity	7.90E-04
47	GO:0008469: histone-arginine N-methyltransferase activity	7.90E-04
48	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.90E-04
49	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.90E-04
50	GO:0051537: 2 iron, 2 sulfur cluster binding	9.99E-04
51	GO:0035529: NADH pyrophosphatase activity	1.13E-03
52	GO:0004792: thiosulfate sulfurtransferase activity	1.13E-03
53	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.13E-03
54	GO:0047627: adenylylsulfatase activity	1.13E-03
55	GO:0048027: mRNA 5'-UTR binding	1.13E-03
56	GO:0004672: protein kinase activity	1.32E-03
57	GO:0015368: calcium:cation antiporter activity	1.50E-03
58	GO:0015369: calcium:proton antiporter activity	1.50E-03
59	GO:0004356: glutamate-ammonia ligase activity	1.91E-03
60	GO:0004518: nuclease activity	2.35E-03
61	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.35E-03
62	GO:0004784: superoxide dismutase activity	2.35E-03
63	GO:0030060: L-malate dehydrogenase activity	2.83E-03
64	GO:0005261: cation channel activity	2.83E-03
65	GO:0004144: diacylglycerol O-acyltransferase activity	2.83E-03
66	GO:0019899: enzyme binding	3.33E-03
67	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.33E-03
68	GO:0004427: inorganic diphosphatase activity	3.33E-03
69	GO:0016621: cinnamoyl-CoA reductase activity	3.33E-03
70	GO:0030247: polysaccharide binding	3.72E-03
71	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.86E-03
72	GO:0004034: aldose 1-epimerase activity	3.86E-03
73	GO:0046914: transition metal ion binding	4.42E-03
74	GO:0001055: RNA polymerase II activity	5.62E-03
75	GO:0004673: protein histidine kinase activity	6.25E-03
76	GO:0008168: methyltransferase activity	6.81E-03
77	GO:0004860: protein kinase inhibitor activity	6.91E-03
78	GO:0004129: cytochrome-c oxidase activity	6.91E-03
79	GO:0046872: metal ion binding	6.96E-03
80	GO:0016788: hydrolase activity, acting on ester bonds	7.32E-03
81	GO:0008378: galactosyltransferase activity	7.60E-03
82	GO:0031072: heat shock protein binding	8.30E-03
83	GO:0000155: phosphorelay sensor kinase activity	8.30E-03
84	GO:0003824: catalytic activity	8.48E-03
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.03E-03
86	GO:0030552: cAMP binding	9.79E-03
87	GO:0030553: cGMP binding	9.79E-03
88	GO:0052689: carboxylic ester hydrolase activity	1.07E-02
89	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.11E-02
90	GO:0005216: ion channel activity	1.22E-02
91	GO:0042803: protein homodimerization activity	1.25E-02
92	GO:0004871: signal transducer activity	1.25E-02
93	GO:0004176: ATP-dependent peptidase activity	1.30E-02
94	GO:0005507: copper ion binding	1.43E-02
95	GO:0009055: electron carrier activity	1.69E-02
96	GO:0005249: voltage-gated potassium channel activity	1.75E-02
97	GO:0030551: cyclic nucleotide binding	1.75E-02
98	GO:0030170: pyridoxal phosphate binding	1.80E-02
99	GO:0004674: protein serine/threonine kinase activity	1.80E-02
100	GO:0008080: N-acetyltransferase activity	1.85E-02
101	GO:0001085: RNA polymerase II transcription factor binding	1.85E-02
102	GO:0050662: coenzyme binding	1.95E-02
103	GO:0016853: isomerase activity	1.95E-02
104	GO:0048038: quinone binding	2.15E-02
105	GO:0000156: phosphorelay response regulator activity	2.36E-02
106	GO:0008237: metallopeptidase activity	2.57E-02
107	GO:0008483: transaminase activity	2.57E-02
108	GO:0016413: O-acetyltransferase activity	2.68E-02
109	GO:0016168: chlorophyll binding	2.91E-02
110	GO:0008236: serine-type peptidase activity	3.25E-02
111	GO:0046982: protein heterodimerization activity	3.41E-02
112	GO:0016491: oxidoreductase activity	3.61E-02
113	GO:0004222: metalloendopeptidase activity	3.62E-02
114	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.74E-02
115	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.99E-02
116	GO:0008422: beta-glucosidase activity	4.25E-02
117	GO:0051539: 4 iron, 4 sulfur cluster binding	4.38E-02
118	GO:0004364: glutathione transferase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.48E-06
2	GO:0000152: nuclear ubiquitin ligase complex	2.18E-04
3	GO:0009535: chloroplast thylakoid membrane	3.31E-04
4	GO:0016604: nuclear body	3.36E-04
5	GO:0009897: external side of plasma membrane	7.90E-04
6	GO:0042646: plastid nucleoid	1.13E-03
7	GO:0005829: cytosol	1.31E-03
8	GO:0009526: plastid envelope	1.50E-03
9	GO:0031372: UBC13-MMS2 complex	1.50E-03
10	GO:0016591: DNA-directed RNA polymerase II, holoenzyme	1.91E-03
11	GO:0031463: Cul3-RING ubiquitin ligase complex	2.35E-03
12	GO:0031359: integral component of chloroplast outer membrane	3.33E-03
13	GO:0005811: lipid particle	4.42E-03
14	GO:0005779: integral component of peroxisomal membrane	4.42E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.00E-03
16	GO:0042644: chloroplast nucleoid	5.00E-03
17	GO:0009570: chloroplast stroma	5.39E-03
18	GO:0000418: DNA-directed RNA polymerase IV complex	6.25E-03
19	GO:0005884: actin filament	6.91E-03
20	GO:0005665: DNA-directed RNA polymerase II, core complex	7.60E-03
21	GO:0005773: vacuole	8.29E-03
22	GO:0005764: lysosome	9.03E-03
23	GO:0009536: plastid	1.03E-02
24	GO:0000419: DNA-directed RNA polymerase V complex	1.06E-02
25	GO:0042651: thylakoid membrane	1.22E-02
26	GO:0015935: small ribosomal subunit	1.30E-02
27	GO:0009543: chloroplast thylakoid lumen	1.62E-02
28	GO:0005623: cell	1.67E-02
29	GO:0009523: photosystem II	2.05E-02
30	GO:0009295: nucleoid	2.57E-02
31	GO:0005778: peroxisomal membrane	2.57E-02
32	GO:0046658: anchored component of plasma membrane	2.97E-02
33	GO:0005667: transcription factor complex	3.02E-02
34	GO:0009707: chloroplast outer membrane	3.37E-02
35	GO:0005777: peroxisome	3.76E-02
36	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.80E-02
37	GO:0009579: thylakoid	3.95E-02
38	GO:0009534: chloroplast thylakoid	4.00E-02
39	GO:0031969: chloroplast membrane	4.30E-02
40	GO:0005789: endoplasmic reticulum membrane	4.47E-02