co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G16880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:1902395: regulation of 1-deoxy-D-xylulose-5-phosphate synthase activity	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0007172: signal complex assembly	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0042493: response to drug	0.00E+00
13	GO:0015727: lactate transport	0.00E+00
14	GO:0071474: cellular hyperosmotic response	0.00E+00
15	GO:0015979: photosynthesis	1.25E-05
16	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.74E-05
17	GO:0009773: photosynthetic electron transport in photosystem I	5.76E-05
18	GO:0010021: amylopectin biosynthetic process	8.40E-05
19	GO:0042549: photosystem II stabilization	1.88E-04
20	GO:0061077: chaperone-mediated protein folding	2.26E-04
21	GO:0043007: maintenance of rDNA	3.70E-04
22	GO:0090548: response to nitrate starvation	3.70E-04
23	GO:0010450: inflorescence meristem growth	3.70E-04
24	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.70E-04
25	GO:0060261: positive regulation of transcription initiation from RNA polymerase II promoter	3.70E-04
26	GO:0005980: glycogen catabolic process	3.70E-04
27	GO:0043953: protein transport by the Tat complex	3.70E-04
28	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.70E-04
29	GO:1902025: nitrate import	3.70E-04
30	GO:0015671: oxygen transport	3.70E-04
31	GO:0010480: microsporocyte differentiation	3.70E-04
32	GO:0065002: intracellular protein transmembrane transport	3.70E-04
33	GO:0030091: protein repair	4.14E-04
34	GO:0048507: meristem development	6.07E-04
35	GO:0031648: protein destabilization	8.05E-04
36	GO:0006521: regulation of cellular amino acid metabolic process	8.05E-04
37	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.05E-04
38	GO:0080181: lateral root branching	8.05E-04
39	GO:0051262: protein tetramerization	8.05E-04
40	GO:0006741: NADP biosynthetic process	8.05E-04
41	GO:0018026: peptidyl-lysine monomethylation	8.05E-04
42	GO:0048829: root cap development	8.35E-04
43	GO:0006810: transport	8.84E-04
44	GO:0005977: glycogen metabolic process	1.30E-03
45	GO:0045165: cell fate commitment	1.30E-03
46	GO:0019674: NAD metabolic process	1.30E-03
47	GO:0048281: inflorescence morphogenesis	1.30E-03
48	GO:0006000: fructose metabolic process	1.30E-03
49	GO:0009405: pathogenesis	1.30E-03
50	GO:0006954: inflammatory response	1.30E-03
51	GO:0009934: regulation of meristem structural organization	1.40E-03
52	GO:0019363: pyridine nucleotide biosynthetic process	1.88E-03
53	GO:0007231: osmosensory signaling pathway	1.88E-03
54	GO:0010239: chloroplast mRNA processing	1.88E-03
55	GO:0009650: UV protection	1.88E-03
56	GO:0010306: rhamnogalacturonan II biosynthetic process	1.88E-03
57	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.88E-03
58	GO:0010148: transpiration	1.88E-03
59	GO:0046739: transport of virus in multicellular host	1.88E-03
60	GO:1901332: negative regulation of lateral root development	1.88E-03
61	GO:0010321: regulation of vegetative phase change	1.88E-03
62	GO:0005992: trehalose biosynthetic process	1.93E-03
63	GO:0009944: polarity specification of adaxial/abaxial axis	1.93E-03
64	GO:0045454: cell redox homeostasis	2.09E-03
65	GO:0006109: regulation of carbohydrate metabolic process	2.52E-03
66	GO:0022622: root system development	2.52E-03
67	GO:0033500: carbohydrate homeostasis	2.52E-03
68	GO:0010600: regulation of auxin biosynthetic process	2.52E-03
69	GO:0006552: leucine catabolic process	2.52E-03
70	GO:0009664: plant-type cell wall organization	3.21E-03
71	GO:1902183: regulation of shoot apical meristem development	3.23E-03
72	GO:0010158: abaxial cell fate specification	3.23E-03
73	GO:0006465: signal peptide processing	3.23E-03
74	GO:1902456: regulation of stomatal opening	3.99E-03
75	GO:0042793: transcription from plastid promoter	3.99E-03
76	GO:0003006: developmental process involved in reproduction	3.99E-03
77	GO:0009635: response to herbicide	3.99E-03
78	GO:0009646: response to absence of light	4.13E-03
79	GO:0019252: starch biosynthetic process	4.43E-03
80	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.81E-03
81	GO:1901259: chloroplast rRNA processing	4.81E-03
82	GO:0032502: developmental process	5.07E-03
83	GO:0009740: gibberellic acid mediated signaling pathway	5.10E-03
84	GO:0010103: stomatal complex morphogenesis	5.68E-03
85	GO:0032880: regulation of protein localization	5.68E-03
86	GO:0010161: red light signaling pathway	5.68E-03
87	GO:0048437: floral organ development	5.68E-03
88	GO:0070370: cellular heat acclimation	5.68E-03
89	GO:1900057: positive regulation of leaf senescence	5.68E-03
90	GO:0022904: respiratory electron transport chain	5.68E-03
91	GO:0009409: response to cold	6.16E-03
92	GO:0010928: regulation of auxin mediated signaling pathway	6.61E-03
93	GO:0005978: glycogen biosynthetic process	6.61E-03
94	GO:0006353: DNA-templated transcription, termination	6.61E-03
95	GO:0070413: trehalose metabolism in response to stress	6.61E-03
96	GO:0009704: de-etiolation	6.61E-03
97	GO:0010027: thylakoid membrane organization	6.87E-03
98	GO:0010093: specification of floral organ identity	7.58E-03
99	GO:0006002: fructose 6-phosphate metabolic process	7.58E-03
100	GO:0009827: plant-type cell wall modification	7.58E-03
101	GO:0001558: regulation of cell growth	7.58E-03
102	GO:0010497: plasmodesmata-mediated intercellular transport	7.58E-03
103	GO:0016311: dephosphorylation	8.53E-03
104	GO:0051865: protein autoubiquitination	8.60E-03
105	GO:0019432: triglyceride biosynthetic process	8.60E-03
106	GO:2000024: regulation of leaf development	8.60E-03
107	GO:0048589: developmental growth	8.60E-03
108	GO:0005982: starch metabolic process	9.67E-03
109	GO:0010205: photoinhibition	9.67E-03
110	GO:0009631: cold acclimation	1.04E-02
111	GO:0006949: syncytium formation	1.08E-02
112	GO:0009299: mRNA transcription	1.08E-02
113	GO:0045490: pectin catabolic process	1.11E-02
114	GO:0010015: root morphogenesis	1.19E-02
115	GO:0006816: calcium ion transport	1.19E-02
116	GO:0019684: photosynthesis, light reaction	1.19E-02
117	GO:0006913: nucleocytoplasmic transport	1.19E-02
118	GO:0009089: lysine biosynthetic process via diaminopimelate	1.19E-02
119	GO:0043085: positive regulation of catalytic activity	1.19E-02
120	GO:0009750: response to fructose	1.19E-02
121	GO:0048229: gametophyte development	1.19E-02
122	GO:0071365: cellular response to auxin stimulus	1.32E-02
123	GO:0005983: starch catabolic process	1.32E-02
124	GO:0010152: pollen maturation	1.32E-02
125	GO:0010582: floral meristem determinacy	1.32E-02
126	GO:0018107: peptidyl-threonine phosphorylation	1.44E-02
127	GO:0010075: regulation of meristem growth	1.44E-02
128	GO:0009725: response to hormone	1.44E-02
129	GO:0006094: gluconeogenesis	1.44E-02
130	GO:0005986: sucrose biosynthetic process	1.44E-02
131	GO:2000012: regulation of auxin polar transport	1.44E-02
132	GO:0010628: positive regulation of gene expression	1.44E-02
133	GO:0006807: nitrogen compound metabolic process	1.44E-02
134	GO:0009640: photomorphogenesis	1.47E-02
135	GO:0009266: response to temperature stimulus	1.57E-02
136	GO:0006302: double-strand break repair	1.57E-02
137	GO:0048467: gynoecium development	1.57E-02
138	GO:0010207: photosystem II assembly	1.57E-02
139	GO:0009933: meristem structural organization	1.57E-02
140	GO:0019853: L-ascorbic acid biosynthetic process	1.70E-02
141	GO:0010030: positive regulation of seed germination	1.70E-02
142	GO:0070588: calcium ion transmembrane transport	1.70E-02
143	GO:0009826: unidimensional cell growth	1.84E-02
144	GO:0051302: regulation of cell division	2.12E-02
145	GO:0006874: cellular calcium ion homeostasis	2.12E-02
146	GO:0007017: microtubule-based process	2.12E-02
147	GO:0005975: carbohydrate metabolic process	2.14E-02
148	GO:0048511: rhythmic process	2.27E-02
149	GO:0019915: lipid storage	2.27E-02
150	GO:0051321: meiotic cell cycle	2.27E-02
151	GO:0003333: amino acid transmembrane transport	2.27E-02
152	GO:0009735: response to cytokinin	2.37E-02
153	GO:0019748: secondary metabolic process	2.42E-02
154	GO:0030245: cellulose catabolic process	2.42E-02
155	GO:0010017: red or far-red light signaling pathway	2.42E-02
156	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.42E-02
157	GO:0080167: response to karrikin	2.53E-02
158	GO:0006012: galactose metabolic process	2.58E-02
159	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.58E-02
160	GO:0009686: gibberellin biosynthetic process	2.58E-02
161	GO:0009411: response to UV	2.58E-02
162	GO:0071369: cellular response to ethylene stimulus	2.58E-02
163	GO:0001944: vasculature development	2.58E-02
164	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.64E-02
165	GO:0009416: response to light stimulus	2.70E-02
166	GO:0048443: stamen development	2.73E-02
167	GO:0006284: base-excision repair	2.73E-02
168	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.90E-02
169	GO:0008284: positive regulation of cell proliferation	2.90E-02
170	GO:0018105: peptidyl-serine phosphorylation	2.92E-02
171	GO:0009742: brassinosteroid mediated signaling pathway	3.01E-02
172	GO:0055114: oxidation-reduction process	3.05E-02
173	GO:0048653: anther development	3.06E-02
174	GO:0042631: cellular response to water deprivation	3.06E-02
175	GO:0010051: xylem and phloem pattern formation	3.06E-02
176	GO:0048868: pollen tube development	3.23E-02
177	GO:0046323: glucose import	3.23E-02
178	GO:0009741: response to brassinosteroid	3.23E-02
179	GO:0009958: positive gravitropism	3.23E-02
180	GO:0006520: cellular amino acid metabolic process	3.23E-02
181	GO:0010154: fruit development	3.23E-02
182	GO:0010305: leaf vascular tissue pattern formation	3.23E-02
183	GO:0006662: glycerol ether metabolic process	3.23E-02
184	GO:0042752: regulation of circadian rhythm	3.40E-02
185	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.75E-02
186	GO:0071554: cell wall organization or biogenesis	3.75E-02
187	GO:0007165: signal transduction	3.85E-02
188	GO:0006281: DNA repair	4.09E-02
189	GO:1901657: glycosyl compound metabolic process	4.11E-02
190	GO:0071281: cellular response to iron ion	4.11E-02
191	GO:0009567: double fertilization forming a zygote and endosperm	4.30E-02
192	GO:0009828: plant-type cell wall loosening	4.30E-02
193	GO:0040008: regulation of growth	4.66E-02
194	GO:0006351: transcription, DNA-templated	4.81E-02
195	GO:0001666: response to hypoxia	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0015129: lactate transmembrane transporter activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
5	GO:0017046: peptide hormone binding	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0009899: ent-kaurene synthase activity	0.00E+00
8	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.40E-05
9	GO:0042277: peptide binding	8.40E-05
10	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.54E-04
11	GO:0030570: pectate lyase activity	2.89E-04
12	GO:0042736: NADH kinase activity	3.70E-04
13	GO:0005344: oxygen transporter activity	3.70E-04
14	GO:0005227: calcium activated cation channel activity	3.70E-04
15	GO:0008184: glycogen phosphorylase activity	3.70E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.70E-04
17	GO:0004645: phosphorylase activity	3.70E-04
18	GO:0004033: aldo-keto reductase (NADP) activity	4.14E-04
19	GO:0016868: intramolecular transferase activity, phosphotransferases	8.05E-04
20	GO:0043425: bHLH transcription factor binding	8.05E-04
21	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.05E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.05E-04
23	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.05E-04
24	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.05E-04
25	GO:0019156: isoamylase activity	8.05E-04
26	GO:0004352: glutamate dehydrogenase (NAD+) activity	8.05E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.05E-04
28	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	8.05E-04
29	GO:0004805: trehalose-phosphatase activity	8.35E-04
30	GO:0004180: carboxypeptidase activity	1.30E-03
31	GO:0043169: cation binding	1.30E-03
32	GO:0090729: toxin activity	1.30E-03
33	GO:0016805: dipeptidase activity	1.30E-03
34	GO:0005354: galactose transmembrane transporter activity	1.88E-03
35	GO:0016851: magnesium chelatase activity	1.88E-03
36	GO:0033612: receptor serine/threonine kinase binding	2.35E-03
37	GO:0016279: protein-lysine N-methyltransferase activity	2.52E-03
38	GO:0010011: auxin binding	2.52E-03
39	GO:0080032: methyl jasmonate esterase activity	2.52E-03
40	GO:0010328: auxin influx transmembrane transporter activity	2.52E-03
41	GO:0019199: transmembrane receptor protein kinase activity	2.52E-03
42	GO:0043621: protein self-association	2.65E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	3.23E-03
44	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	3.23E-03
45	GO:0009055: electron carrier activity	3.42E-03
46	GO:0080030: methyl indole-3-acetate esterase activity	3.99E-03
47	GO:0004556: alpha-amylase activity	3.99E-03
48	GO:0004462: lactoylglutathione lyase activity	3.99E-03
49	GO:0042578: phosphoric ester hydrolase activity	3.99E-03
50	GO:0048038: quinone binding	4.74E-03
51	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	4.81E-03
52	GO:0051920: peroxiredoxin activity	4.81E-03
53	GO:0005261: cation channel activity	4.81E-03
54	GO:0015035: protein disulfide oxidoreductase activity	5.72E-03
55	GO:0016209: antioxidant activity	6.61E-03
56	GO:0003951: NAD+ kinase activity	7.58E-03
57	GO:0016829: lyase activity	8.11E-03
58	GO:0004252: serine-type endopeptidase activity	8.38E-03
59	GO:0030145: manganese ion binding	1.04E-02
60	GO:0008047: enzyme activator activity	1.08E-02
61	GO:0015020: glucuronosyltransferase activity	1.08E-02
62	GO:0044183: protein binding involved in protein folding	1.19E-02
63	GO:0008378: galactosyltransferase activity	1.32E-02
64	GO:0004521: endoribonuclease activity	1.32E-02
65	GO:0005262: calcium channel activity	1.44E-02
66	GO:0004565: beta-galactosidase activity	1.44E-02
67	GO:0004185: serine-type carboxypeptidase activity	1.47E-02
68	GO:0008083: growth factor activity	1.57E-02
69	GO:0051537: 2 iron, 2 sulfur cluster binding	1.60E-02
70	GO:0004970: ionotropic glutamate receptor activity	1.70E-02
71	GO:0005217: intracellular ligand-gated ion channel activity	1.70E-02
72	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.72E-02
73	GO:0004857: enzyme inhibitor activity	1.98E-02
74	GO:0005528: FK506 binding	1.98E-02
75	GO:0008408: 3'-5' exonuclease activity	2.27E-02
76	GO:0008810: cellulase activity	2.58E-02
77	GO:0003727: single-stranded RNA binding	2.73E-02
78	GO:0047134: protein-disulfide reductase activity	2.90E-02
79	GO:0046872: metal ion binding	3.15E-02
80	GO:0003713: transcription coactivator activity	3.23E-02
81	GO:0004791: thioredoxin-disulfide reductase activity	3.40E-02
82	GO:0005355: glucose transmembrane transporter activity	3.40E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.11E-02
84	GO:0016791: phosphatase activity	4.30E-02
85	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.40E-02
86	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.49E-02
87	GO:0005200: structural constituent of cytoskeleton	4.49E-02
88	GO:0016413: O-acetyltransferase activity	4.68E-02
89	GO:0016597: amino acid binding	4.68E-02
90	GO:0015250: water channel activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0010368: chloroplast isoamylase complex	0.00E+00
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.59E-07
7	GO:0009507: chloroplast	5.97E-07
8	GO:0009534: chloroplast thylakoid	1.53E-06
9	GO:0009535: chloroplast thylakoid membrane	5.31E-06
10	GO:0009570: chloroplast stroma	7.16E-06
11	GO:0030095: chloroplast photosystem II	1.06E-04
12	GO:0009654: photosystem II oxygen evolving complex	1.98E-04
13	GO:0009543: chloroplast thylakoid lumen	2.64E-04
14	GO:0009579: thylakoid	2.79E-04
15	GO:0031361: integral component of thylakoid membrane	3.70E-04
16	GO:0000791: euchromatin	3.70E-04
17	GO:0005787: signal peptidase complex	3.70E-04
18	GO:0009538: photosystem I reaction center	4.14E-04
19	GO:0019898: extrinsic component of membrane	5.31E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.05E-04
21	GO:0030870: Mre11 complex	8.05E-04
22	GO:0010007: magnesium chelatase complex	1.30E-03
23	GO:0033281: TAT protein transport complex	1.30E-03
24	GO:0009531: secondary cell wall	1.88E-03
25	GO:0000795: synaptonemal complex	3.23E-03
26	GO:0009533: chloroplast stromal thylakoid	5.68E-03
27	GO:0010319: stromule	6.11E-03
28	GO:0009295: nucleoid	6.11E-03
29	GO:0009501: amyloplast	6.61E-03
30	GO:0031305: integral component of mitochondrial inner membrane	6.61E-03
31	GO:0008180: COP9 signalosome	8.60E-03
32	GO:0045298: tubulin complex	8.60E-03
33	GO:0055028: cortical microtubule	1.08E-02
34	GO:0005740: mitochondrial envelope	1.08E-02
35	GO:0031977: thylakoid lumen	1.36E-02
36	GO:0009508: plastid chromosome	1.44E-02
37	GO:0009941: chloroplast envelope	1.68E-02
38	GO:0042651: thylakoid membrane	2.12E-02
39	GO:0005874: microtubule	2.42E-02
40	GO:0010287: plastoglobule	3.36E-02
41	GO:0009523: photosystem II	3.57E-02
42	GO:0000785: chromatin	3.93E-02