co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G16710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
2	GO:0006720: isoprenoid metabolic process	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
6	GO:0036172: thiamine salvage	0.00E+00
7	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
8	GO:0071000: response to magnetism	0.00E+00
9	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
10	GO:0032928: regulation of superoxide anion generation	0.00E+00
11	GO:0010343: singlet oxygen-mediated programmed cell death	7.28E-07
12	GO:0006516: glycoprotein catabolic process	6.48E-06
13	GO:0009229: thiamine diphosphate biosynthetic process	2.01E-05
14	GO:0010117: photoprotection	2.01E-05
15	GO:0046283: anthocyanin-containing compound metabolic process	2.01E-05
16	GO:0009228: thiamine biosynthetic process	3.03E-05
17	GO:0072387: flavin adenine dinucleotide metabolic process	1.20E-04
18	GO:0032956: regulation of actin cytoskeleton organization	1.20E-04
19	GO:0016487: farnesol metabolic process	1.20E-04
20	GO:0016031: tRNA import into mitochondrion	1.20E-04
21	GO:0043407: negative regulation of MAP kinase activity	1.20E-04
22	GO:0071266: 'de novo' L-methionine biosynthetic process	1.20E-04
23	GO:0019346: transsulfuration	1.20E-04
24	GO:0006285: base-excision repair, AP site formation	1.20E-04
25	GO:0019343: cysteine biosynthetic process via cystathionine	1.20E-04
26	GO:0016122: xanthophyll metabolic process	2.77E-04
27	GO:1901529: positive regulation of anion channel activity	2.77E-04
28	GO:2000030: regulation of response to red or far red light	2.77E-04
29	GO:2000071: regulation of defense response by callose deposition	2.77E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	2.77E-04
31	GO:0099402: plant organ development	2.77E-04
32	GO:0048571: long-day photoperiodism	2.77E-04
33	GO:0000162: tryptophan biosynthetic process	3.68E-04
34	GO:2000377: regulation of reactive oxygen species metabolic process	4.09E-04
35	GO:0006696: ergosterol biosynthetic process	4.58E-04
36	GO:0010351: lithium ion transport	4.58E-04
37	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.58E-04
38	GO:1902448: positive regulation of shade avoidance	4.58E-04
39	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	4.58E-04
40	GO:0006013: mannose metabolic process	4.58E-04
41	GO:0008652: cellular amino acid biosynthetic process	4.58E-04
42	GO:1901672: positive regulation of systemic acquired resistance	4.58E-04
43	GO:0044210: 'de novo' CTP biosynthetic process	4.58E-04
44	GO:0034051: negative regulation of plant-type hypersensitive response	4.58E-04
45	GO:0009150: purine ribonucleotide metabolic process	4.58E-04
46	GO:0031929: TOR signaling	4.58E-04
47	GO:0009067: aspartate family amino acid biosynthetic process	6.57E-04
48	GO:0009399: nitrogen fixation	6.57E-04
49	GO:0009963: positive regulation of flavonoid biosynthetic process	6.57E-04
50	GO:0009647: skotomorphogenesis	6.57E-04
51	GO:1901332: negative regulation of lateral root development	6.57E-04
52	GO:0010118: stomatal movement	7.45E-04
53	GO:0034613: cellular protein localization	8.72E-04
54	GO:0006542: glutamine biosynthetic process	8.72E-04
55	GO:0009649: entrainment of circadian clock	8.72E-04
56	GO:1902347: response to strigolactone	8.72E-04
57	GO:0018344: protein geranylgeranylation	1.10E-03
58	GO:0000304: response to singlet oxygen	1.10E-03
59	GO:0098719: sodium ion import across plasma membrane	1.10E-03
60	GO:0016070: RNA metabolic process	1.35E-03
61	GO:0031053: primary miRNA processing	1.35E-03
62	GO:0045962: positive regulation of development, heterochronic	1.35E-03
63	GO:1901371: regulation of leaf morphogenesis	1.35E-03
64	GO:0007035: vacuolar acidification	1.35E-03
65	GO:0060918: auxin transport	1.35E-03
66	GO:0034314: Arp2/3 complex-mediated actin nucleation	1.35E-03
67	GO:0033365: protein localization to organelle	1.35E-03
68	GO:0010310: regulation of hydrogen peroxide metabolic process	1.61E-03
69	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.61E-03
70	GO:0009396: folic acid-containing compound biosynthetic process	1.89E-03
71	GO:0051510: regulation of unidimensional cell growth	1.89E-03
72	GO:0006102: isocitrate metabolic process	2.19E-03
73	GO:0045292: mRNA cis splicing, via spliceosome	2.19E-03
74	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.19E-03
75	GO:0001522: pseudouridine synthesis	2.19E-03
76	GO:0009704: de-etiolation	2.19E-03
77	GO:0098656: anion transmembrane transport	2.82E-03
78	GO:0009640: photomorphogenesis	2.93E-03
79	GO:0051453: regulation of intracellular pH	3.16E-03
80	GO:1900426: positive regulation of defense response to bacterium	3.16E-03
81	GO:0009638: phototropism	3.16E-03
82	GO:0035999: tetrahydrofolate interconversion	3.16E-03
83	GO:0009688: abscisic acid biosynthetic process	3.51E-03
84	GO:0009641: shade avoidance	3.51E-03
85	GO:0006535: cysteine biosynthetic process from serine	3.51E-03
86	GO:0000103: sulfate assimilation	3.51E-03
87	GO:0006508: proteolysis	3.52E-03
88	GO:0009682: induced systemic resistance	3.88E-03
89	GO:0006879: cellular iron ion homeostasis	3.88E-03
90	GO:0006790: sulfur compound metabolic process	4.26E-03
91	GO:0010075: regulation of meristem growth	4.64E-03
92	GO:0009785: blue light signaling pathway	4.64E-03
93	GO:0048440: carpel development	5.04E-03
94	GO:0007015: actin filament organization	5.04E-03
95	GO:0019344: cysteine biosynthetic process	6.32E-03
96	GO:0007005: mitochondrion organization	7.69E-03
97	GO:0016226: iron-sulfur cluster assembly	7.69E-03
98	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.69E-03
99	GO:0006284: base-excision repair	8.66E-03
100	GO:0016117: carotenoid biosynthetic process	9.17E-03
101	GO:0015991: ATP hydrolysis coupled proton transport	9.68E-03
102	GO:0006814: sodium ion transport	1.07E-02
103	GO:0042752: regulation of circadian rhythm	1.07E-02
104	GO:0009646: response to absence of light	1.07E-02
105	GO:0008654: phospholipid biosynthetic process	1.13E-02
106	GO:0009851: auxin biosynthetic process	1.13E-02
107	GO:0002229: defense response to oomycetes	1.18E-02
108	GO:0010193: response to ozone	1.18E-02
109	GO:0030163: protein catabolic process	1.30E-02
110	GO:0071805: potassium ion transmembrane transport	1.41E-02
111	GO:0042128: nitrate assimilation	1.66E-02
112	GO:0006950: response to stress	1.72E-02
113	GO:0048573: photoperiodism, flowering	1.72E-02
114	GO:0048366: leaf development	1.76E-02
115	GO:0018298: protein-chromophore linkage	1.85E-02
116	GO:0009407: toxin catabolic process	1.99E-02
117	GO:0010218: response to far red light	1.99E-02
118	GO:0048527: lateral root development	2.05E-02
119	GO:0010119: regulation of stomatal movement	2.05E-02
120	GO:0009637: response to blue light	2.19E-02
121	GO:0009853: photorespiration	2.19E-02
122	GO:0009867: jasmonic acid mediated signaling pathway	2.19E-02
123	GO:0006099: tricarboxylic acid cycle	2.26E-02
124	GO:0034599: cellular response to oxidative stress	2.26E-02
125	GO:0016310: phosphorylation	2.61E-02
126	GO:0010114: response to red light	2.63E-02
127	GO:0008283: cell proliferation	2.63E-02
128	GO:0009644: response to high light intensity	2.78E-02
129	GO:0009965: leaf morphogenesis	2.85E-02
130	GO:0031347: regulation of defense response	3.01E-02
131	GO:0008152: metabolic process	3.02E-02
132	GO:0009809: lignin biosynthetic process	3.25E-02
133	GO:0009585: red, far-red light phototransduction	3.25E-02
134	GO:0010224: response to UV-B	3.33E-02
135	GO:0006417: regulation of translation	3.49E-02
136	GO:0009620: response to fungus	3.91E-02
137	GO:0016569: covalent chromatin modification	4.00E-02
138	GO:0000398: mRNA splicing, via spliceosome	4.62E-02
139	GO:0009555: pollen development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0042030: ATPase inhibitor activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0052670: geraniol kinase activity	0.00E+00
4	GO:0052668: farnesol kinase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0052671: geranylgeraniol kinase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
9	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
10	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
11	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
12	GO:0071949: FAD binding	1.17E-04
13	GO:0004123: cystathionine gamma-lyase activity	1.20E-04
14	GO:0033549: MAP kinase phosphatase activity	1.20E-04
15	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.20E-04
16	GO:0004560: alpha-L-fucosidase activity	1.20E-04
17	GO:0004048: anthranilate phosphoribosyltransferase activity	1.20E-04
18	GO:0004121: cystathionine beta-lyase activity	1.20E-04
19	GO:0051996: squalene synthase activity	1.20E-04
20	GO:0019707: protein-cysteine S-acyltransferase activity	1.20E-04
21	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	1.20E-04
22	GO:0004067: asparaginase activity	2.77E-04
23	GO:0004412: homoserine dehydrogenase activity	2.77E-04
24	GO:0008798: beta-aspartyl-peptidase activity	2.77E-04
25	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.77E-04
26	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.77E-04
27	GO:0004180: carboxypeptidase activity	4.58E-04
28	GO:0004848: ureidoglycolate hydrolase activity	4.58E-04
29	GO:0004663: Rab geranylgeranyltransferase activity	4.58E-04
30	GO:0003962: cystathionine gamma-synthase activity	4.58E-04
31	GO:0000339: RNA cap binding	6.57E-04
32	GO:0009882: blue light photoreceptor activity	6.57E-04
33	GO:0047627: adenylylsulfatase activity	6.57E-04
34	GO:0009001: serine O-acetyltransferase activity	6.57E-04
35	GO:0003883: CTP synthase activity	6.57E-04
36	GO:0004834: tryptophan synthase activity	8.72E-04
37	GO:0019104: DNA N-glycosylase activity	8.72E-04
38	GO:0004356: glutamate-ammonia ligase activity	1.10E-03
39	GO:0016407: acetyltransferase activity	1.10E-03
40	GO:0015081: sodium ion transmembrane transporter activity	1.35E-03
41	GO:0004605: phosphatidate cytidylyltransferase activity	1.35E-03
42	GO:0004559: alpha-mannosidase activity	1.61E-03
43	GO:0070300: phosphatidic acid binding	1.61E-03
44	GO:0016621: cinnamoyl-CoA reductase activity	1.89E-03
45	GO:0035064: methylated histone binding	2.19E-03
46	GO:0015078: hydrogen ion transmembrane transporter activity	2.50E-03
47	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.82E-03
48	GO:0008233: peptidase activity	3.16E-03
49	GO:0015386: potassium:proton antiporter activity	3.88E-03
50	GO:0004129: cytochrome-c oxidase activity	3.88E-03
51	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.88E-03
52	GO:0009982: pseudouridine synthase activity	4.64E-03
53	GO:0015266: protein channel activity	4.64E-03
54	GO:0005315: inorganic phosphate transmembrane transporter activity	4.64E-03
55	GO:0004725: protein tyrosine phosphatase activity	5.88E-03
56	GO:0004386: helicase activity	6.09E-03
57	GO:0016787: hydrolase activity	6.21E-03
58	GO:0005528: FK506 binding	6.32E-03
59	GO:0003824: catalytic activity	7.80E-03
60	GO:0008514: organic anion transmembrane transporter activity	8.66E-03
61	GO:0016887: ATPase activity	9.23E-03
62	GO:0003713: transcription coactivator activity	1.02E-02
63	GO:0016491: oxidoreductase activity	1.03E-02
64	GO:0050662: coenzyme binding	1.07E-02
65	GO:0042802: identical protein binding	1.23E-02
66	GO:0051015: actin filament binding	1.30E-02
67	GO:0015385: sodium:proton antiporter activity	1.30E-02
68	GO:0004601: peroxidase activity	1.50E-02
69	GO:0008236: serine-type peptidase activity	1.79E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.85E-02
71	GO:0003723: RNA binding	2.14E-02
72	GO:0004364: glutathione transferase activity	2.55E-02
73	GO:0043621: protein self-association	2.78E-02
74	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
75	GO:0051287: NAD binding	3.01E-02
76	GO:0051082: unfolded protein binding	4.17E-02
77	GO:0000166: nucleotide binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.29E-06
2	GO:0000152: nuclear ubiquitin ligase complex	1.20E-04
3	GO:0031932: TORC2 complex	1.20E-04
4	GO:0005845: mRNA cap binding complex	1.20E-04
5	GO:0016604: nuclear body	1.41E-04
6	GO:0005846: nuclear cap binding complex	2.77E-04
7	GO:0016605: PML body	4.58E-04
8	GO:0031931: TORC1 complex	4.58E-04
9	GO:0031969: chloroplast membrane	5.44E-04
10	GO:0009570: chloroplast stroma	5.92E-04
11	GO:0005968: Rab-protein geranylgeranyltransferase complex	6.57E-04
12	GO:0009517: PSII associated light-harvesting complex II	8.72E-04
13	GO:0033179: proton-transporting V-type ATPase, V0 domain	8.72E-04
14	GO:0005737: cytoplasm	9.49E-04
15	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.10E-03
16	GO:0005885: Arp2/3 protein complex	1.61E-03
17	GO:0009840: chloroplastic endopeptidase Clp complex	1.61E-03
18	GO:0042644: chloroplast nucleoid	2.82E-03
19	GO:0005875: microtubule associated complex	5.88E-03
20	GO:0042651: thylakoid membrane	6.76E-03
21	GO:0009532: plastid stroma	7.22E-03
22	GO:0009941: chloroplast envelope	8.09E-03
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.66E-03
24	GO:0009536: plastid	9.23E-03
25	GO:0005773: vacuole	1.02E-02
26	GO:0005777: peroxisome	1.31E-02
27	GO:0032580: Golgi cisterna membrane	1.36E-02
28	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.64E-02
29	GO:0005643: nuclear pore	1.85E-02
30	GO:0005768: endosome	2.34E-02
31	GO:0010008: endosome membrane	3.74E-02
32	GO:0016607: nuclear speck	3.74E-02
33	GO:0009706: chloroplast inner membrane	4.17E-02
34	GO:0010287: plastoglobule	4.71E-02
35	GO:0009543: chloroplast thylakoid lumen	4.89E-02