co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G16155

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006223: uracil salvage	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0032544: plastid translation	5.14E-14
6	GO:0006412: translation	7.77E-14
7	GO:0009735: response to cytokinin	7.06E-10
8	GO:0042254: ribosome biogenesis	3.46E-09
9	GO:0009658: chloroplast organization	3.03E-05
10	GO:0010196: nonphotochemical quenching	4.78E-05
11	GO:0010027: thylakoid membrane organization	8.61E-05
12	GO:0010206: photosystem II repair	9.74E-05
13	GO:0009409: response to cold	9.99E-05
14	GO:0043489: RNA stabilization	1.06E-04
15	GO:0071588: hydrogen peroxide mediated signaling pathway	1.06E-04
16	GO:0009817: defense response to fungus, incompatible interaction	1.27E-04
17	GO:0009773: photosynthetic electron transport in photosystem I	1.65E-04
18	GO:0010270: photosystem II oxygen evolving complex assembly	2.48E-04
19	GO:0042742: defense response to bacterium	2.68E-04
20	GO:2001295: malonyl-CoA biosynthetic process	4.12E-04
21	GO:0015979: photosynthesis	5.20E-04
22	GO:0006424: glutamyl-tRNA aminoacylation	5.92E-04
23	GO:0051085: chaperone mediated protein folding requiring cofactor	5.92E-04
24	GO:0006241: CTP biosynthetic process	5.92E-04
25	GO:0006165: nucleoside diphosphate phosphorylation	5.92E-04
26	GO:0006228: UTP biosynthetic process	5.92E-04
27	GO:0000413: protein peptidyl-prolyl isomerization	6.38E-04
28	GO:2000122: negative regulation of stomatal complex development	7.86E-04
29	GO:0010021: amylopectin biosynthetic process	7.86E-04
30	GO:0010037: response to carbon dioxide	7.86E-04
31	GO:0015976: carbon utilization	7.86E-04
32	GO:0019464: glycine decarboxylation via glycine cleavage system	7.86E-04
33	GO:0006183: GTP biosynthetic process	7.86E-04
34	GO:0045727: positive regulation of translation	7.86E-04
35	GO:0044206: UMP salvage	7.86E-04
36	GO:0019252: starch biosynthetic process	7.87E-04
37	GO:0000302: response to reactive oxygen species	8.40E-04
38	GO:0043097: pyrimidine nucleoside salvage	9.92E-04
39	GO:0032543: mitochondrial translation	9.92E-04
40	GO:0006461: protein complex assembly	9.92E-04
41	GO:0006544: glycine metabolic process	9.92E-04
42	GO:0007623: circadian rhythm	1.16E-03
43	GO:0006563: L-serine metabolic process	1.21E-03
44	GO:0000470: maturation of LSU-rRNA	1.21E-03
45	GO:0006828: manganese ion transport	1.21E-03
46	GO:0006206: pyrimidine nucleobase metabolic process	1.21E-03
47	GO:0015995: chlorophyll biosynthetic process	1.40E-03
48	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.45E-03
49	GO:0010019: chloroplast-nucleus signaling pathway	1.45E-03
50	GO:0010555: response to mannitol	1.45E-03
51	GO:0009955: adaxial/abaxial pattern specification	1.45E-03
52	GO:0042026: protein refolding	1.45E-03
53	GO:1901259: chloroplast rRNA processing	1.45E-03
54	GO:0009631: cold acclimation	1.78E-03
55	GO:0005978: glycogen biosynthetic process	1.97E-03
56	GO:0009642: response to light intensity	1.97E-03
57	GO:0034599: cellular response to oxidative stress	2.03E-03
58	GO:0009657: plastid organization	2.24E-03
59	GO:0006783: heme biosynthetic process	2.53E-03
60	GO:0046686: response to cadmium ion	2.67E-03
61	GO:0005982: starch metabolic process	2.84E-03
62	GO:0035999: tetrahydrofolate interconversion	2.84E-03
63	GO:0006782: protoporphyrinogen IX biosynthetic process	3.15E-03
64	GO:0055114: oxidation-reduction process	3.45E-03
65	GO:0009089: lysine biosynthetic process via diaminopimelate	3.47E-03
66	GO:0016485: protein processing	3.47E-03
67	GO:0006816: calcium ion transport	3.47E-03
68	GO:0006415: translational termination	3.47E-03
69	GO:0005983: starch catabolic process	3.81E-03
70	GO:0009767: photosynthetic electron transport chain	4.16E-03
71	GO:0010020: chloroplast fission	4.52E-03
72	GO:0006289: nucleotide-excision repair	5.65E-03
73	GO:0019344: cysteine biosynthetic process	5.65E-03
74	GO:0009116: nucleoside metabolic process	5.65E-03
75	GO:0000027: ribosomal large subunit assembly	5.65E-03
76	GO:0042744: hydrogen peroxide catabolic process	6.76E-03
77	GO:0007005: mitochondrion organization	6.87E-03
78	GO:0035428: hexose transmembrane transport	6.87E-03
79	GO:0009790: embryo development	6.93E-03
80	GO:0009411: response to UV	7.30E-03
81	GO:0006284: base-excision repair	7.74E-03
82	GO:0046323: glucose import	9.10E-03
83	GO:0032502: developmental process	1.11E-02
84	GO:0030163: protein catabolic process	1.16E-02
85	GO:0006457: protein folding	1.24E-02
86	GO:0009627: systemic acquired resistance	1.48E-02
87	GO:0080167: response to karrikin	1.58E-02
88	GO:0008219: cell death	1.65E-02
89	GO:0010119: regulation of stomatal movement	1.83E-02
90	GO:0045454: cell redox homeostasis	1.89E-02
91	GO:0045087: innate immune response	1.95E-02
92	GO:0009853: photorespiration	1.95E-02
93	GO:0006979: response to oxidative stress	2.20E-02
94	GO:0042542: response to hydrogen peroxide	2.27E-02
95	GO:0008152: metabolic process	2.57E-02
96	GO:0006508: proteolysis	2.85E-02
97	GO:0006364: rRNA processing	2.89E-02
98	GO:0009585: red, far-red light phototransduction	2.89E-02
99	GO:0009626: plant-type hypersensitive response	3.41E-02
100	GO:0006396: RNA processing	3.80E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0019843: rRNA binding	2.95E-21
7	GO:0003735: structural constituent of ribosome	3.45E-16
8	GO:0008266: poly(U) RNA binding	6.90E-08
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.02E-05
10	GO:0004130: cytochrome-c peroxidase activity	2.49E-05
11	GO:0051920: peroxiredoxin activity	3.53E-05
12	GO:0016209: antioxidant activity	6.23E-05
13	GO:0004856: xylulokinase activity	1.06E-04
14	GO:0009496: plastoquinol--plastocyanin reductase activity	1.06E-04
15	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.06E-04
16	GO:0019203: carbohydrate phosphatase activity	1.06E-04
17	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.06E-04
18	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.06E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.06E-04
20	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.06E-04
21	GO:0004853: uroporphyrinogen decarboxylase activity	1.06E-04
22	GO:0008967: phosphoglycolate phosphatase activity	2.48E-04
23	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.48E-04
24	GO:0033201: alpha-1,4-glucan synthase activity	2.48E-04
25	GO:0005528: FK506 binding	3.49E-04
26	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	4.12E-04
27	GO:0004075: biotin carboxylase activity	4.12E-04
28	GO:0030267: glyoxylate reductase (NADP) activity	4.12E-04
29	GO:0070402: NADPH binding	4.12E-04
30	GO:0004324: ferredoxin-NADP+ reductase activity	4.12E-04
31	GO:0004373: glycogen (starch) synthase activity	4.12E-04
32	GO:0016149: translation release factor activity, codon specific	5.92E-04
33	GO:0004550: nucleoside diphosphate kinase activity	5.92E-04
34	GO:0043023: ribosomal large subunit binding	5.92E-04
35	GO:0050662: coenzyme binding	7.35E-04
36	GO:0009011: starch synthase activity	7.86E-04
37	GO:0008878: glucose-1-phosphate adenylyltransferase activity	7.86E-04
38	GO:0004845: uracil phosphoribosyltransferase activity	7.86E-04
39	GO:0019104: DNA N-glycosylase activity	7.86E-04
40	GO:0004372: glycine hydroxymethyltransferase activity	9.92E-04
41	GO:0003959: NADPH dehydrogenase activity	9.92E-04
42	GO:0003989: acetyl-CoA carboxylase activity	9.92E-04
43	GO:0016773: phosphotransferase activity, alcohol group as acceptor	9.92E-04
44	GO:0016688: L-ascorbate peroxidase activity	1.21E-03
45	GO:0004849: uridine kinase activity	1.45E-03
46	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.45E-03
47	GO:0004602: glutathione peroxidase activity	1.45E-03
48	GO:0008236: serine-type peptidase activity	1.47E-03
49	GO:0004222: metalloendopeptidase activity	1.70E-03
50	GO:0016491: oxidoreductase activity	1.99E-03
51	GO:0004601: peroxidase activity	2.00E-03
52	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.53E-03
53	GO:0003747: translation release factor activity	2.53E-03
54	GO:0005384: manganese ion transmembrane transporter activity	2.84E-03
55	GO:0044183: protein binding involved in protein folding	3.47E-03
56	GO:0015386: potassium:proton antiporter activity	3.47E-03
57	GO:0004089: carbonate dehydratase activity	4.16E-03
58	GO:0015095: magnesium ion transmembrane transporter activity	4.16E-03
59	GO:0031072: heat shock protein binding	4.16E-03
60	GO:0051082: unfolded protein binding	4.75E-03
61	GO:0015079: potassium ion transmembrane transporter activity	6.05E-03
62	GO:0004252: serine-type endopeptidase activity	6.59E-03
63	GO:0022891: substrate-specific transmembrane transporter activity	7.30E-03
64	GO:0005355: glucose transmembrane transporter activity	9.58E-03
65	GO:0003729: mRNA binding	9.66E-03
66	GO:0048038: quinone binding	1.06E-02
67	GO:0003684: damaged DNA binding	1.21E-02
68	GO:0008237: metallopeptidase activity	1.26E-02
69	GO:0016168: chlorophyll binding	1.42E-02
70	GO:0030247: polysaccharide binding	1.54E-02
71	GO:0008233: peptidase activity	1.55E-02
72	GO:0051537: 2 iron, 2 sulfur cluster binding	2.47E-02
73	GO:0005198: structural molecule activity	2.54E-02
74	GO:0003723: RNA binding	4.23E-02
75	GO:0030170: pyridoxal phosphate binding	4.70E-02
76	GO:0015144: carbohydrate transmembrane transporter activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	8.17E-64
4	GO:0009570: chloroplast stroma	3.71E-54
5	GO:0009941: chloroplast envelope	1.80E-50
6	GO:0009534: chloroplast thylakoid	2.16E-32
7	GO:0009579: thylakoid	1.07E-30
8	GO:0009535: chloroplast thylakoid membrane	6.27E-30
9	GO:0005840: ribosome	9.55E-16
10	GO:0009543: chloroplast thylakoid lumen	1.39E-10
11	GO:0031977: thylakoid lumen	1.51E-10
12	GO:0009533: chloroplast stromal thylakoid	3.91E-07
13	GO:0016020: membrane	1.63E-06
14	GO:0010319: stromule	2.24E-06
15	GO:0010287: plastoglobule	4.13E-06
16	GO:0009706: chloroplast inner membrane	5.36E-05
17	GO:0009536: plastid	7.65E-05
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.74E-05
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.06E-04
20	GO:0000311: plastid large ribosomal subunit	1.91E-04
21	GO:0009508: plastid chromosome	2.19E-04
22	GO:0030093: chloroplast photosystem I	2.48E-04
23	GO:0048046: apoplast	2.85E-04
24	GO:0022626: cytosolic ribosome	3.25E-04
25	GO:0031969: chloroplast membrane	4.23E-04
26	GO:0009517: PSII associated light-harvesting complex II	7.86E-04
27	GO:0009523: photosystem II	7.87E-04
28	GO:0009512: cytochrome b6f complex	9.92E-04
29	GO:0009295: nucleoid	1.07E-03
30	GO:0015934: large ribosomal subunit	1.78E-03
31	GO:0009501: amyloplast	1.97E-03
32	GO:0005763: mitochondrial small ribosomal subunit	2.53E-03
33	GO:0042644: chloroplast nucleoid	2.53E-03
34	GO:0022625: cytosolic large ribosomal subunit	2.80E-03
35	GO:0000312: plastid small ribosomal subunit	4.52E-03
36	GO:0030095: chloroplast photosystem II	4.52E-03
37	GO:0015935: small ribosomal subunit	6.46E-03
38	GO:0005759: mitochondrial matrix	7.46E-03
39	GO:0030529: intracellular ribonucleoprotein complex	1.37E-02