co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G15840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0010202: response to low fluence red light stimulus	0.00E+00
3	GO:0017012: protein-phytochromobilin linkage	0.00E+00
4	GO:0019566: arabinose metabolic process	0.00E+00
5	GO:0042908: xenobiotic transport	0.00E+00
6	GO:0006007: glucose catabolic process	4.74E-05
7	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	4.74E-05
8	GO:0006006: glucose metabolic process	6.88E-05
9	GO:2000030: regulation of response to red or far red light	1.17E-04
10	GO:0019388: galactose catabolic process	1.17E-04
11	GO:0010617: circadian regulation of calcium ion oscillation	1.17E-04
12	GO:0097054: L-glutamate biosynthetic process	1.17E-04
13	GO:0080183: response to photooxidative stress	1.17E-04
14	GO:0043100: pyrimidine nucleobase salvage	1.17E-04
15	GO:1901562: response to paraquat	2.00E-04
16	GO:0006520: cellular amino acid metabolic process	2.40E-04
17	GO:0009584: detection of visible light	2.94E-04
18	GO:0010148: transpiration	2.94E-04
19	GO:0015700: arsenite transport	2.94E-04
20	GO:0006537: glutamate biosynthetic process	2.94E-04
21	GO:0009590: detection of gravity	2.94E-04
22	GO:0006221: pyrimidine nucleotide biosynthetic process	3.94E-04
23	GO:0009649: entrainment of circadian clock	3.94E-04
24	GO:0044205: 'de novo' UMP biosynthetic process	3.94E-04
25	GO:0009902: chloroplast relocation	3.94E-04
26	GO:0006646: phosphatidylethanolamine biosynthetic process	3.94E-04
27	GO:0009687: abscisic acid metabolic process	3.94E-04
28	GO:0070534: protein K63-linked ubiquitination	3.94E-04
29	GO:0019676: ammonia assimilation cycle	3.94E-04
30	GO:0010236: plastoquinone biosynthetic process	5.00E-04
31	GO:0006555: methionine metabolic process	6.13E-04
32	GO:0006301: postreplication repair	6.13E-04
33	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.13E-04
34	GO:0019509: L-methionine salvage from methylthioadenosine	7.31E-04
35	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	7.31E-04
36	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	8.54E-04
37	GO:0050790: regulation of catalytic activity	8.54E-04
38	GO:0010374: stomatal complex development	8.54E-04
39	GO:0010161: red light signaling pathway	8.54E-04
40	GO:0005978: glycogen biosynthetic process	9.81E-04
41	GO:0030091: protein repair	9.81E-04
42	GO:0015996: chlorophyll catabolic process	1.11E-03
43	GO:0055114: oxidation-reduction process	1.15E-03
44	GO:0009585: red, far-red light phototransduction	1.18E-03
45	GO:0046685: response to arsenic-containing substance	1.25E-03
46	GO:0009638: phototropism	1.40E-03
47	GO:0006896: Golgi to vacuole transport	1.55E-03
48	GO:0006325: chromatin organization	1.55E-03
49	GO:0052544: defense response by callose deposition in cell wall	1.70E-03
50	GO:0006879: cellular iron ion homeostasis	1.70E-03
51	GO:0018119: peptidyl-cysteine S-nitrosylation	1.70E-03
52	GO:0048229: gametophyte development	1.70E-03
53	GO:0046686: response to cadmium ion	2.02E-03
54	GO:2000028: regulation of photoperiodism, flowering	2.03E-03
55	GO:0050826: response to freezing	2.03E-03
56	GO:0009058: biosynthetic process	2.19E-03
57	GO:0007034: vacuolar transport	2.20E-03
58	GO:0009266: response to temperature stimulus	2.20E-03
59	GO:0019853: L-ascorbic acid biosynthetic process	2.38E-03
60	GO:0035556: intracellular signal transduction	2.46E-03
61	GO:0051017: actin filament bundle assembly	2.74E-03
62	GO:0008299: isoprenoid biosynthetic process	2.93E-03
63	GO:0016226: iron-sulfur cluster assembly	3.32E-03
64	GO:0031348: negative regulation of defense response	3.32E-03
65	GO:0009693: ethylene biosynthetic process	3.52E-03
66	GO:0006012: galactose metabolic process	3.52E-03
67	GO:0042391: regulation of membrane potential	4.15E-03
68	GO:0010118: stomatal movement	4.15E-03
69	GO:0006623: protein targeting to vacuole	4.81E-03
70	GO:0019252: starch biosynthetic process	4.81E-03
71	GO:0008654: phospholipid biosynthetic process	4.81E-03
72	GO:0009630: gravitropism	5.28E-03
73	GO:1901657: glycosyl compound metabolic process	5.52E-03
74	GO:0006508: proteolysis	5.65E-03
75	GO:0006464: cellular protein modification process	5.75E-03
76	GO:0015979: photosynthesis	6.18E-03
77	GO:0006468: protein phosphorylation	6.59E-03
78	GO:0045892: negative regulation of transcription, DNA-templated	6.59E-03
79	GO:0010029: regulation of seed germination	6.75E-03
80	GO:0009816: defense response to bacterium, incompatible interaction	6.75E-03
81	GO:0018298: protein-chromophore linkage	7.81E-03
82	GO:0009408: response to heat	7.99E-03
83	GO:0009409: response to cold	8.22E-03
84	GO:0010218: response to far red light	8.37E-03
85	GO:0009867: jasmonic acid mediated signaling pathway	9.22E-03
86	GO:0005975: carbohydrate metabolic process	9.51E-03
87	GO:0009640: photomorphogenesis	1.10E-02
88	GO:0006855: drug transmembrane transport	1.23E-02
89	GO:0031347: regulation of defense response	1.26E-02
90	GO:0051603: proteolysis involved in cellular protein catabolic process	1.39E-02
91	GO:0006096: glycolytic process	1.53E-02
92	GO:0009620: response to fungus	1.64E-02
93	GO:0018105: peptidyl-serine phosphorylation	1.78E-02
94	GO:0055085: transmembrane transport	1.81E-02
95	GO:0042744: hydrogen peroxide catabolic process	2.24E-02
96	GO:0042742: defense response to bacterium	2.89E-02
97	GO:0010468: regulation of gene expression	2.92E-02
98	GO:0009617: response to bacterium	2.92E-02
99	GO:0080167: response to karrikin	4.09E-02
100	GO:0046777: protein autophosphorylation	4.30E-02
101	GO:0044550: secondary metabolite biosynthetic process	4.35E-02
102	GO:0045454: cell redox homeostasis	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
2	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
4	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
5	GO:0031517: red light photoreceptor activity	0.00E+00
6	GO:0004151: dihydroorotase activity	0.00E+00
7	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
8	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
9	GO:0015930: glutamate synthase activity	0.00E+00
10	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
11	GO:0009702: L-arabinokinase activity	0.00E+00
12	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
13	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
14	GO:0042030: ATPase inhibitor activity	0.00E+00
15	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
16	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.30E-06
17	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	6.58E-06
18	GO:0046480: galactolipid galactosyltransferase activity	4.74E-05
19	GO:0080079: cellobiose glucosidase activity	4.74E-05
20	GO:0016776: phosphotransferase activity, phosphate group as acceptor	4.74E-05
21	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	4.74E-05
22	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	4.74E-05
23	GO:0008802: betaine-aldehyde dehydrogenase activity	4.74E-05
24	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	4.74E-05
25	GO:0010209: vacuolar sorting signal binding	4.74E-05
26	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	4.74E-05
27	GO:0080047: GDP-L-galactose phosphorylase activity	4.74E-05
28	GO:1990841: promoter-specific chromatin binding	4.74E-05
29	GO:0071992: phytochelatin transmembrane transporter activity	4.74E-05
30	GO:0004307: ethanolaminephosphotransferase activity	4.74E-05
31	GO:0016041: glutamate synthase (ferredoxin) activity	4.74E-05
32	GO:0031516: far-red light photoreceptor activity	4.74E-05
33	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	4.74E-05
34	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	4.74E-05
35	GO:0080048: GDP-D-glucose phosphorylase activity	4.74E-05
36	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	1.17E-04
37	GO:0050347: trans-octaprenyltranstransferase activity	1.17E-04
38	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.17E-04
39	GO:0030572: phosphatidyltransferase activity	1.17E-04
40	GO:0004142: diacylglycerol cholinephosphotransferase activity	1.17E-04
41	GO:0004614: phosphoglucomutase activity	1.17E-04
42	GO:0009883: red or far-red light photoreceptor activity	1.17E-04
43	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	2.00E-04
44	GO:0032947: protein complex scaffold	2.00E-04
45	GO:0004557: alpha-galactosidase activity	2.00E-04
46	GO:0008020: G-protein coupled photoreceptor activity	2.00E-04
47	GO:0016656: monodehydroascorbate reductase (NADH) activity	2.94E-04
48	GO:0004672: protein kinase activity	3.57E-04
49	GO:0004335: galactokinase activity	3.94E-04
50	GO:0051538: 3 iron, 4 sulfur cluster binding	5.00E-04
51	GO:0004029: aldehyde dehydrogenase (NAD) activity	6.13E-04
52	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	6.13E-04
53	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	6.13E-04
54	GO:0080046: quercetin 4'-O-glucosyltransferase activity	6.13E-04
55	GO:0005261: cation channel activity	7.31E-04
56	GO:0005085: guanyl-nucleotide exchange factor activity	8.54E-04
57	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	9.81E-04
58	GO:0004034: aldose 1-epimerase activity	9.81E-04
59	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.40E-03
60	GO:0004673: protein histidine kinase activity	1.55E-03
61	GO:0008559: xenobiotic-transporting ATPase activity	1.70E-03
62	GO:0008378: galactosyltransferase activity	1.86E-03
63	GO:0000155: phosphorelay sensor kinase activity	2.03E-03
64	GO:0030170: pyridoxal phosphate binding	2.30E-03
65	GO:0030553: cGMP binding	2.38E-03
66	GO:0030552: cAMP binding	2.38E-03
67	GO:0005216: ion channel activity	2.93E-03
68	GO:0004176: ATP-dependent peptidase activity	3.12E-03
69	GO:0042802: identical protein binding	3.60E-03
70	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.60E-03
71	GO:0005516: calmodulin binding	3.84E-03
72	GO:0030551: cyclic nucleotide binding	4.15E-03
73	GO:0005249: voltage-gated potassium channel activity	4.15E-03
74	GO:0016853: isomerase activity	4.59E-03
75	GO:0004197: cysteine-type endopeptidase activity	5.28E-03
76	GO:0008483: transaminase activity	6.00E-03
77	GO:0008237: metallopeptidase activity	6.00E-03
78	GO:0005524: ATP binding	6.02E-03
79	GO:0004871: signal transducer activity	6.79E-03
80	GO:0009931: calcium-dependent protein serine/threonine kinase activity	7.01E-03
81	GO:0004683: calmodulin-dependent protein kinase activity	7.28E-03
82	GO:0008236: serine-type peptidase activity	7.54E-03
83	GO:0004222: metalloendopeptidase activity	8.37E-03
84	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	8.37E-03
85	GO:0030145: manganese ion binding	8.65E-03
86	GO:0008422: beta-glucosidase activity	9.80E-03
87	GO:0016887: ATPase activity	1.24E-02
88	GO:0016298: lipase activity	1.39E-02
89	GO:0046872: metal ion binding	1.41E-02
90	GO:0031625: ubiquitin protein ligase binding	1.46E-02
91	GO:0008234: cysteine-type peptidase activity	1.46E-02
92	GO:0051082: unfolded protein binding	1.75E-02
93	GO:0015035: protein disulfide oxidoreductase activity	1.78E-02
94	GO:0005509: calcium ion binding	2.66E-02
95	GO:0005506: iron ion binding	2.84E-02
96	GO:0003824: catalytic activity	3.17E-02
97	GO:0000287: magnesium ion binding	3.47E-02
98	GO:0016788: hydrolase activity, acting on ester bonds	3.56E-02
99	GO:0016491: oxidoreductase activity	3.79E-02
100	GO:0050660: flavin adenine dinucleotide binding	3.90E-02
101	GO:0008233: peptidase activity	4.04E-02
102	GO:0004674: protein serine/threonine kinase activity	4.17E-02
103	GO:0061630: ubiquitin protein ligase activity	4.24E-02
104	GO:0052689: carboxylic ester hydrolase activity	4.40E-02
105	GO:0042803: protein homodimerization activity	4.81E-02
106	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009536: plastid	3.20E-05
2	GO:0005782: peroxisomal matrix	2.00E-04
3	GO:0005829: cytosol	2.92E-04
4	GO:0010319: stromule	3.85E-04
5	GO:0031372: UBC13-MMS2 complex	3.94E-04
6	GO:0009526: plastid envelope	3.94E-04
7	GO:0031359: integral component of chloroplast outer membrane	8.54E-04
8	GO:0009501: amyloplast	9.81E-04
9	GO:0016604: nuclear body	1.40E-03
10	GO:0030665: clathrin-coated vesicle membrane	1.40E-03
11	GO:0017119: Golgi transport complex	1.55E-03
12	GO:0005884: actin filament	1.70E-03
13	GO:0048471: perinuclear region of cytoplasm	1.70E-03
14	GO:0005764: lysosome	2.20E-03
15	GO:0005759: mitochondrial matrix	2.60E-03
16	GO:0009941: chloroplast envelope	2.76E-03
17	GO:0005773: vacuole	3.42E-03
18	GO:0009507: chloroplast	3.53E-03
19	GO:0005770: late endosome	4.37E-03
20	GO:0009707: chloroplast outer membrane	7.81E-03
21	GO:0000325: plant-type vacuole	8.65E-03
22	GO:0031902: late endosome membrane	1.04E-02
23	GO:0005887: integral component of plasma membrane	1.09E-02
24	GO:0005747: mitochondrial respiratory chain complex I	1.57E-02
25	GO:0016607: nuclear speck	1.57E-02
26	GO:0005834: heterotrimeric G-protein complex	1.60E-02
27	GO:0005777: peroxisome	1.63E-02
28	GO:0005739: mitochondrion	1.67E-02
29	GO:0009570: chloroplast stroma	1.78E-02
30	GO:0010287: plastoglobule	1.97E-02
31	GO:0005623: cell	2.09E-02
32	GO:0005774: vacuolar membrane	2.70E-02
33	GO:0005615: extracellular space	2.79E-02
34	GO:0048046: apoplast	2.87E-02
35	GO:0005737: cytoplasm	3.72E-02
36	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.75E-02
37	GO:0031969: chloroplast membrane	4.09E-02
38	GO:0009506: plasmodesma	4.95E-02