co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G15545

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046460: neutral lipid biosynthetic process	0.00E+00
7	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
8	GO:0046294: formaldehyde catabolic process	0.00E+00
9	GO:0009106: lipoate metabolic process	0.00E+00
10	GO:0032928: regulation of superoxide anion generation	0.00E+00
11	GO:0097164: ammonium ion metabolic process	0.00E+00
12	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
13	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
14	GO:0009661: chromoplast organization	0.00E+00
15	GO:0009658: chloroplast organization	4.96E-07
16	GO:0010343: singlet oxygen-mediated programmed cell death	3.13E-06
17	GO:0080005: photosystem stoichiometry adjustment	3.13E-06
18	GO:2001141: regulation of RNA biosynthetic process	2.55E-05
19	GO:0009902: chloroplast relocation	4.61E-05
20	GO:0010207: photosystem II assembly	4.83E-05
21	GO:0010117: photoprotection	7.32E-05
22	GO:0016120: carotene biosynthetic process	7.32E-05
23	GO:0046283: anthocyanin-containing compound metabolic process	7.32E-05
24	GO:0010190: cytochrome b6f complex assembly	1.07E-04
25	GO:0010118: stomatal movement	2.00E-04
26	GO:0048564: photosystem I assembly	2.45E-04
27	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.45E-04
28	GO:0072387: flavin adenine dinucleotide metabolic process	2.60E-04
29	GO:0071454: cellular response to anoxia	2.60E-04
30	GO:0071461: cellular response to redox state	2.60E-04
31	GO:0034970: histone H3-R2 methylation	2.60E-04
32	GO:0010362: negative regulation of anion channel activity by blue light	2.60E-04
33	GO:0034972: histone H3-R26 methylation	2.60E-04
34	GO:0010036: response to boron-containing substance	2.60E-04
35	GO:0019343: cysteine biosynthetic process via cystathionine	2.60E-04
36	GO:0071266: 'de novo' L-methionine biosynthetic process	2.60E-04
37	GO:1902265: abscisic acid homeostasis	2.60E-04
38	GO:0019346: transsulfuration	2.60E-04
39	GO:0034971: histone H3-R17 methylation	2.60E-04
40	GO:0071482: cellular response to light stimulus	3.02E-04
41	GO:0032544: plastid translation	3.02E-04
42	GO:0009638: phototropism	4.33E-04
43	GO:1904143: positive regulation of carotenoid biosynthetic process	5.74E-04
44	GO:0006529: asparagine biosynthetic process	5.74E-04
45	GO:0016122: xanthophyll metabolic process	5.74E-04
46	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	5.74E-04
47	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.74E-04
48	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.74E-04
49	GO:1901529: positive regulation of anion channel activity	5.74E-04
50	GO:0060359: response to ammonium ion	5.74E-04
51	GO:0048255: mRNA stabilization	5.74E-04
52	GO:0010617: circadian regulation of calcium ion oscillation	5.74E-04
53	GO:0070981: L-asparagine biosynthetic process	5.74E-04
54	GO:0007154: cell communication	5.74E-04
55	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.74E-04
56	GO:0099402: plant organ development	5.74E-04
57	GO:2000071: regulation of defense response by callose deposition	5.74E-04
58	GO:0006996: organelle organization	5.74E-04
59	GO:0006352: DNA-templated transcription, initiation	5.84E-04
60	GO:0009767: photosynthetic electron transport chain	7.57E-04
61	GO:0009637: response to blue light	9.08E-04
62	GO:0044375: regulation of peroxisome size	9.31E-04
63	GO:0043157: response to cation stress	9.31E-04
64	GO:0031022: nuclear migration along microfilament	9.31E-04
65	GO:1902448: positive regulation of shade avoidance	9.31E-04
66	GO:0006013: mannose metabolic process	9.31E-04
67	GO:1901672: positive regulation of systemic acquired resistance	9.31E-04
68	GO:0009150: purine ribonucleotide metabolic process	9.31E-04
69	GO:0071492: cellular response to UV-A	9.31E-04
70	GO:0006696: ergosterol biosynthetic process	9.31E-04
71	GO:0009640: photomorphogenesis	1.24E-03
72	GO:0046713: borate transport	1.33E-03
73	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.33E-03
74	GO:0010371: regulation of gibberellin biosynthetic process	1.33E-03
75	GO:0090307: mitotic spindle assembly	1.33E-03
76	GO:0009647: skotomorphogenesis	1.33E-03
77	GO:0033014: tetrapyrrole biosynthetic process	1.33E-03
78	GO:0009399: nitrogen fixation	1.33E-03
79	GO:1901332: negative regulation of lateral root development	1.33E-03
80	GO:0009963: positive regulation of flavonoid biosynthetic process	1.33E-03
81	GO:0051289: protein homotetramerization	1.33E-03
82	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.33E-03
83	GO:0006542: glutamine biosynthetic process	1.78E-03
84	GO:0071486: cellular response to high light intensity	1.78E-03
85	GO:0009765: photosynthesis, light harvesting	1.78E-03
86	GO:0031122: cytoplasmic microtubule organization	1.78E-03
87	GO:0009649: entrainment of circadian clock	1.78E-03
88	GO:1902347: response to strigolactone	1.78E-03
89	GO:0034613: cellular protein localization	1.78E-03
90	GO:0016117: carotenoid biosynthetic process	1.97E-03
91	GO:0035434: copper ion transmembrane transport	2.27E-03
92	GO:0009107: lipoate biosynthetic process	2.27E-03
93	GO:0000304: response to singlet oxygen	2.27E-03
94	GO:0045038: protein import into chloroplast thylakoid membrane	2.27E-03
95	GO:0009646: response to absence of light	2.47E-03
96	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.80E-03
97	GO:0009959: negative gravitropism	2.80E-03
98	GO:0060918: auxin transport	2.80E-03
99	GO:1901371: regulation of leaf morphogenesis	2.80E-03
100	GO:0009416: response to light stimulus	3.30E-03
101	GO:0010019: chloroplast-nucleus signaling pathway	3.36E-03
102	GO:0010310: regulation of hydrogen peroxide metabolic process	3.36E-03
103	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.36E-03
104	GO:0034389: lipid particle organization	3.36E-03
105	GO:0009903: chloroplast avoidance movement	3.36E-03
106	GO:0010038: response to metal ion	3.97E-03
107	GO:1900056: negative regulation of leaf senescence	3.97E-03
108	GO:0051510: regulation of unidimensional cell growth	3.97E-03
109	GO:0050821: protein stabilization	4.60E-03
110	GO:0009231: riboflavin biosynthetic process	4.60E-03
111	GO:0016559: peroxisome fission	4.60E-03
112	GO:0009704: de-etiolation	4.60E-03
113	GO:0022900: electron transport chain	5.27E-03
114	GO:0009880: embryonic pattern specification	5.27E-03
115	GO:0019430: removal of superoxide radicals	5.27E-03
116	GO:0010100: negative regulation of photomorphogenesis	5.27E-03
117	GO:0018298: protein-chromophore linkage	5.32E-03
118	GO:0015780: nucleotide-sugar transport	5.98E-03
119	GO:0009821: alkaloid biosynthetic process	5.98E-03
120	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.98E-03
121	GO:0019432: triglyceride biosynthetic process	5.98E-03
122	GO:0046916: cellular transition metal ion homeostasis	5.98E-03
123	GO:0006783: heme biosynthetic process	5.98E-03
124	GO:0010228: vegetative to reproductive phase transition of meristem	6.02E-03
125	GO:0051453: regulation of intracellular pH	6.71E-03
126	GO:1900426: positive regulation of defense response to bacterium	6.71E-03
127	GO:0006779: porphyrin-containing compound biosynthetic process	6.71E-03
128	GO:0009098: leucine biosynthetic process	6.71E-03
129	GO:0010380: regulation of chlorophyll biosynthetic process	6.71E-03
130	GO:0006810: transport	7.30E-03
131	GO:0009688: abscisic acid biosynthetic process	7.47E-03
132	GO:0045036: protein targeting to chloroplast	7.47E-03
133	GO:0009641: shade avoidance	7.47E-03
134	GO:0051555: flavonol biosynthetic process	7.47E-03
135	GO:0009682: induced systemic resistance	8.27E-03
136	GO:0043085: positive regulation of catalytic activity	8.27E-03
137	GO:0008285: negative regulation of cell proliferation	8.27E-03
138	GO:0009744: response to sucrose	8.70E-03
139	GO:0006790: sulfur compound metabolic process	9.09E-03
140	GO:0045037: protein import into chloroplast stroma	9.09E-03
141	GO:0009644: response to high light intensity	9.42E-03
142	GO:0010075: regulation of meristem growth	9.94E-03
143	GO:0030048: actin filament-based movement	9.94E-03
144	GO:0009785: blue light signaling pathway	9.94E-03
145	GO:0034605: cellular response to heat	1.08E-02
146	GO:0006541: glutamine metabolic process	1.08E-02
147	GO:0019253: reductive pentose-phosphate cycle	1.08E-02
148	GO:0006508: proteolysis	1.15E-02
149	GO:0007031: peroxisome organization	1.17E-02
150	GO:0009585: red, far-red light phototransduction	1.18E-02
151	GO:0006071: glycerol metabolic process	1.27E-02
152	GO:0000162: tryptophan biosynthetic process	1.27E-02
153	GO:2000377: regulation of reactive oxygen species metabolic process	1.36E-02
154	GO:0046777: protein autophosphorylation	1.42E-02
155	GO:0010073: meristem maintenance	1.46E-02
156	GO:0006825: copper ion transport	1.46E-02
157	GO:0007017: microtubule-based process	1.46E-02
158	GO:0016226: iron-sulfur cluster assembly	1.67E-02
159	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.67E-02
160	GO:0010227: floral organ abscission	1.77E-02
161	GO:0009693: ethylene biosynthetic process	1.77E-02
162	GO:0006817: phosphate ion transport	1.88E-02
163	GO:0070417: cellular response to cold	1.99E-02
164	GO:0010051: xylem and phloem pattern formation	2.11E-02
165	GO:0009058: biosynthetic process	2.22E-02
166	GO:0006520: cellular amino acid metabolic process	2.22E-02
167	GO:0006662: glycerol ether metabolic process	2.22E-02
168	GO:0042752: regulation of circadian rhythm	2.34E-02
169	GO:0046686: response to cadmium ion	2.41E-02
170	GO:0008152: metabolic process	2.41E-02
171	GO:0009851: auxin biosynthetic process	2.46E-02
172	GO:0009791: post-embryonic development	2.46E-02
173	GO:0002229: defense response to oomycetes	2.58E-02
174	GO:0009630: gravitropism	2.70E-02
175	GO:0019761: glucosinolate biosynthetic process	2.70E-02
176	GO:0030163: protein catabolic process	2.83E-02
177	GO:0007623: circadian rhythm	2.90E-02
178	GO:0016126: sterol biosynthetic process	3.35E-02
179	GO:0010027: thylakoid membrane organization	3.35E-02
180	GO:0010029: regulation of seed germination	3.49E-02
181	GO:0009816: defense response to bacterium, incompatible interaction	3.49E-02
182	GO:0042128: nitrate assimilation	3.63E-02
183	GO:0015995: chlorophyll biosynthetic process	3.77E-02
184	GO:0048573: photoperiodism, flowering	3.77E-02
185	GO:0000160: phosphorelay signal transduction system	4.20E-02
186	GO:0006811: ion transport	4.34E-02
187	GO:0010218: response to far red light	4.34E-02
188	GO:0009611: response to wounding	4.47E-02
189	GO:0010043: response to zinc ion	4.49E-02
190	GO:0007568: aging	4.49E-02
191	GO:0009910: negative regulation of flower development	4.49E-02
192	GO:0010119: regulation of stomatal movement	4.49E-02
193	GO:0009867: jasmonic acid mediated signaling pathway	4.79E-02
194	GO:0034599: cellular response to oxidative stress	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0070009: serine-type aminopeptidase activity	0.00E+00
2	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
6	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
7	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
8	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0004848: ureidoglycolate hydrolase activity	1.13E-05
11	GO:0048038: quinone binding	1.83E-05
12	GO:0009882: blue light photoreceptor activity	2.55E-05
13	GO:0001053: plastid sigma factor activity	4.61E-05
14	GO:0016987: sigma factor activity	4.61E-05
15	GO:0030941: chloroplast targeting sequence binding	2.60E-04
16	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.60E-04
17	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.60E-04
18	GO:0004123: cystathionine gamma-lyase activity	2.60E-04
19	GO:0046906: tetrapyrrole binding	2.60E-04
20	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.60E-04
21	GO:0080139: borate efflux transmembrane transporter activity	2.60E-04
22	GO:0016783: sulfurtransferase activity	2.60E-04
23	GO:0004071: aspartate-ammonia ligase activity	2.60E-04
24	GO:0004325: ferrochelatase activity	2.60E-04
25	GO:0004121: cystathionine beta-lyase activity	2.60E-04
26	GO:0051996: squalene synthase activity	2.60E-04
27	GO:0042802: identical protein binding	2.86E-04
28	GO:0071949: FAD binding	3.65E-04
29	GO:0017118: lipoyltransferase activity	5.74E-04
30	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	5.74E-04
31	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.74E-04
32	GO:0016415: octanoyltransferase activity	5.74E-04
33	GO:0004046: aminoacylase activity	5.74E-04
34	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.74E-04
35	GO:0035241: protein-arginine omega-N monomethyltransferase activity	5.74E-04
36	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	5.74E-04
37	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	5.74E-04
38	GO:0004222: metalloendopeptidase activity	7.64E-04
39	GO:0008469: histone-arginine N-methyltransferase activity	9.31E-04
40	GO:0004180: carboxypeptidase activity	9.31E-04
41	GO:0046524: sucrose-phosphate synthase activity	9.31E-04
42	GO:0032947: protein complex scaffold	9.31E-04
43	GO:0003962: cystathionine gamma-synthase activity	9.31E-04
44	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.31E-04
45	GO:0004557: alpha-galactosidase activity	9.31E-04
46	GO:0003861: 3-isopropylmalate dehydratase activity	9.31E-04
47	GO:0003935: GTP cyclohydrolase II activity	9.31E-04
48	GO:0047627: adenylylsulfatase activity	1.33E-03
49	GO:0000254: C-4 methylsterol oxidase activity	1.33E-03
50	GO:0004792: thiosulfate sulfurtransferase activity	1.33E-03
51	GO:0046715: borate transmembrane transporter activity	1.33E-03
52	GO:0004176: ATP-dependent peptidase activity	1.41E-03
53	GO:0004834: tryptophan synthase activity	1.78E-03
54	GO:0051861: glycolipid binding	1.78E-03
55	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.78E-03
56	GO:0043015: gamma-tubulin binding	1.78E-03
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.81E-03
58	GO:0016491: oxidoreductase activity	1.84E-03
59	GO:0004356: glutamate-ammonia ligase activity	2.27E-03
60	GO:0015301: anion:anion antiporter activity	2.27E-03
61	GO:0051011: microtubule minus-end binding	2.27E-03
62	GO:0005452: inorganic anion exchanger activity	2.27E-03
63	GO:0022857: transmembrane transporter activity	2.63E-03
64	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.80E-03
65	GO:0000293: ferric-chelate reductase activity	2.80E-03
66	GO:0004784: superoxide dismutase activity	2.80E-03
67	GO:0004518: nuclease activity	3.02E-03
68	GO:0004559: alpha-mannosidase activity	3.36E-03
69	GO:0015631: tubulin binding	3.36E-03
70	GO:0004144: diacylglycerol O-acyltransferase activity	3.36E-03
71	GO:0008237: metallopeptidase activity	3.64E-03
72	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.97E-03
73	GO:0019899: enzyme binding	3.97E-03
74	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.60E-03
75	GO:0046914: transition metal ion binding	5.27E-03
76	GO:0005375: copper ion transmembrane transporter activity	5.27E-03
77	GO:0016844: strictosidine synthase activity	6.71E-03
78	GO:0001055: RNA polymerase II activity	6.71E-03
79	GO:0001054: RNA polymerase I activity	8.27E-03
80	GO:0001056: RNA polymerase III activity	9.09E-03
81	GO:0031072: heat shock protein binding	9.94E-03
82	GO:0000155: phosphorelay sensor kinase activity	9.94E-03
83	GO:0005315: inorganic phosphate transmembrane transporter activity	9.94E-03
84	GO:0016788: hydrolase activity, acting on ester bonds	1.02E-02
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.08E-02
86	GO:0051536: iron-sulfur cluster binding	1.36E-02
87	GO:0042803: protein homodimerization activity	1.74E-02
88	GO:0047134: protein-disulfide reductase activity	1.99E-02
89	GO:0008080: N-acetyltransferase activity	2.22E-02
90	GO:0030170: pyridoxal phosphate binding	2.33E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-02
92	GO:0010181: FMN binding	2.34E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.83E-02
94	GO:0008483: transaminase activity	3.09E-02
95	GO:0005200: structural constituent of cytoskeleton	3.09E-02
96	GO:0046872: metal ion binding	3.15E-02
97	GO:0016597: amino acid binding	3.22E-02
98	GO:0008194: UDP-glycosyltransferase activity	3.25E-02
99	GO:0005506: iron ion binding	3.44E-02
100	GO:0016168: chlorophyll binding	3.49E-02
101	GO:0004806: triglyceride lipase activity	3.77E-02
102	GO:0030247: polysaccharide binding	3.77E-02
103	GO:0008236: serine-type peptidase activity	3.91E-02
104	GO:0003824: catalytic activity	4.03E-02
105	GO:0008168: methyltransferase activity	4.31E-02
106	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.11E-29
2	GO:0009535: chloroplast thylakoid membrane	2.96E-16
3	GO:0031969: chloroplast membrane	1.14E-06
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.12E-05
5	GO:0009941: chloroplast envelope	2.21E-04
6	GO:0009570: chloroplast stroma	2.45E-04
7	GO:0031972: chloroplast intermembrane space	2.60E-04
8	GO:0043674: columella	2.60E-04
9	GO:0000152: nuclear ubiquitin ligase complex	2.60E-04
10	GO:0016604: nuclear body	4.33E-04
11	GO:0009536: plastid	4.71E-04
12	GO:0080085: signal recognition particle, chloroplast targeting	5.74E-04
13	GO:0008274: gamma-tubulin ring complex	5.74E-04
14	GO:0016605: PML body	9.31E-04
15	GO:0016328: lateral plasma membrane	9.31E-04
16	GO:0009534: chloroplast thylakoid	1.23E-03
17	GO:0000923: equatorial microtubule organizing center	1.33E-03
18	GO:0042646: plastid nucleoid	1.33E-03
19	GO:0030286: dynein complex	1.78E-03
20	GO:0009517: PSII associated light-harvesting complex II	1.78E-03
21	GO:0055035: plastid thylakoid membrane	2.27E-03
22	GO:0005773: vacuole	2.40E-03
23	GO:0009706: chloroplast inner membrane	2.83E-03
24	GO:0031359: integral component of chloroplast outer membrane	3.97E-03
25	GO:0005779: integral component of peroxisomal membrane	5.27E-03
26	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.27E-03
27	GO:0005811: lipid particle	5.27E-03
28	GO:0009707: chloroplast outer membrane	5.32E-03
29	GO:0000922: spindle pole	5.98E-03
30	GO:0042644: chloroplast nucleoid	5.98E-03
31	GO:0005875: microtubule associated complex	1.27E-02
32	GO:0000419: DNA-directed RNA polymerase V complex	1.27E-02
33	GO:0043234: protein complex	1.27E-02
34	GO:0042651: thylakoid membrane	1.46E-02
35	GO:0009543: chloroplast thylakoid lumen	2.10E-02
36	GO:0005623: cell	2.16E-02
37	GO:0009523: photosystem II	2.46E-02
38	GO:0005778: peroxisomal membrane	3.09E-02
39	GO:0010319: stromule	3.09E-02
40	GO:0009295: nucleoid	3.09E-02