Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G15540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071000: response to magnetism0.00E+00
2GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
3GO:0019685: photosynthesis, dark reaction0.00E+00
4GO:0009583: detection of light stimulus0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0019343: cysteine biosynthetic process via cystathionine1.39E-05
7GO:0072387: flavin adenine dinucleotide metabolic process1.39E-05
8GO:0048438: floral whorl development1.39E-05
9GO:0071266: 'de novo' L-methionine biosynthetic process1.39E-05
10GO:0019346: transsulfuration1.39E-05
11GO:0010617: circadian regulation of calcium ion oscillation3.65E-05
12GO:0099402: plant organ development3.65E-05
13GO:0010343: singlet oxygen-mediated programmed cell death3.65E-05
14GO:1901529: positive regulation of anion channel activity3.65E-05
15GO:0009150: purine ribonucleotide metabolic process6.55E-05
16GO:0010351: lithium ion transport6.55E-05
17GO:1902448: positive regulation of shade avoidance6.55E-05
18GO:1901672: positive regulation of systemic acquired resistance6.55E-05
19GO:1901332: negative regulation of lateral root development9.94E-05
20GO:2001141: regulation of RNA biosynthetic process9.94E-05
21GO:0010371: regulation of gibberellin biosynthetic process9.94E-05
22GO:1902347: response to strigolactone1.37E-04
23GO:0098719: sodium ion import across plasma membrane1.78E-04
24GO:0010117: photoprotection1.78E-04
25GO:0046283: anthocyanin-containing compound metabolic process1.78E-04
26GO:0009640: photomorphogenesis1.97E-04
27GO:0060918: auxin transport2.22E-04
28GO:1901371: regulation of leaf morphogenesis2.22E-04
29GO:0010076: maintenance of floral meristem identity2.68E-04
30GO:0010310: regulation of hydrogen peroxide metabolic process2.68E-04
31GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.68E-04
32GO:0051510: regulation of unidimensional cell growth3.15E-04
33GO:0071482: cellular response to light stimulus4.16E-04
34GO:0051453: regulation of intracellular pH5.23E-04
35GO:1900426: positive regulation of defense response to bacterium5.23E-04
36GO:0009638: phototropism5.23E-04
37GO:0006352: DNA-templated transcription, initiation6.34E-04
38GO:0008285: negative regulation of cell proliferation6.34E-04
39GO:0006790: sulfur compound metabolic process6.93E-04
40GO:0010582: floral meristem determinacy6.93E-04
41GO:0010075: regulation of meristem growth7.52E-04
42GO:0009767: photosynthetic electron transport chain7.52E-04
43GO:0009785: blue light signaling pathway7.52E-04
44GO:0009266: response to temperature stimulus8.13E-04
45GO:2000377: regulation of reactive oxygen species metabolic process1.00E-03
46GO:0010073: meristem maintenance1.07E-03
47GO:0007017: microtubule-based process1.07E-03
48GO:0010227: floral organ abscission1.27E-03
49GO:0010118: stomatal movement1.49E-03
50GO:0006814: sodium ion transport1.64E-03
51GO:0042752: regulation of circadian rhythm1.64E-03
52GO:0009646: response to absence of light1.64E-03
53GO:0009751: response to salicylic acid1.72E-03
54GO:0071805: potassium ion transmembrane transport2.13E-03
55GO:0018298: protein-chromophore linkage2.75E-03
56GO:0010218: response to far red light2.94E-03
57GO:0006811: ion transport2.94E-03
58GO:0009910: negative regulation of flower development3.03E-03
59GO:0009637: response to blue light3.22E-03
60GO:0010114: response to red light3.83E-03
61GO:0009644: response to high light intensity4.04E-03
62GO:0009636: response to toxic substance4.15E-03
63GO:0000165: MAPK cascade4.36E-03
64GO:0051603: proteolysis involved in cellular protein catabolic process4.81E-03
65GO:0030154: cell differentiation6.70E-03
66GO:0007623: circadian rhythm8.74E-03
67GO:0010228: vegetative to reproductive phase transition of meristem9.02E-03
68GO:0009739: response to gibberellin9.45E-03
69GO:0046686: response to cadmium ion9.59E-03
70GO:0045944: positive regulation of transcription from RNA polymerase II promoter1.13E-02
71GO:0009723: response to ethylene1.32E-02
72GO:0010200: response to chitin1.42E-02
73GO:0046777: protein autophosphorylation1.45E-02
74GO:0045892: negative regulation of transcription, DNA-templated1.59E-02
75GO:0055114: oxidation-reduction process1.68E-02
76GO:0032259: methylation1.77E-02
77GO:0006508: proteolysis1.90E-02
78GO:0009753: response to jasmonic acid1.92E-02
79GO:0006357: regulation of transcription from RNA polymerase II promoter2.23E-02
80GO:0009416: response to light stimulus2.74E-02
81GO:0006351: transcription, DNA-templated4.10E-02
82GO:0009414: response to water deprivation4.46E-02
RankGO TermAdjusted P value
1GO:0071949: FAD binding4.11E-06
2GO:0004123: cystathionine gamma-lyase activity1.39E-05
3GO:0004121: cystathionine beta-lyase activity1.39E-05
4GO:0003962: cystathionine gamma-synthase activity6.55E-05
5GO:0000900: translation repressor activity, nucleic acid binding6.55E-05
6GO:0004180: carboxypeptidase activity6.55E-05
7GO:0009882: blue light photoreceptor activity9.94E-05
8GO:0047627: adenylylsulfatase activity9.94E-05
9GO:0016491: oxidoreductase activity1.32E-04
10GO:0001053: plastid sigma factor activity1.37E-04
11GO:0016987: sigma factor activity1.37E-04
12GO:0015081: sodium ion transmembrane transporter activity2.22E-04
13GO:0000293: ferric-chelate reductase activity2.22E-04
14GO:0015386: potassium:proton antiporter activity6.34E-04
15GO:0031072: heat shock protein binding7.52E-04
16GO:0015385: sodium:proton antiporter activity1.96E-03
17GO:0008236: serine-type peptidase activity2.66E-03
18GO:0004364: glutathione transferase activity3.73E-03
19GO:0004185: serine-type carboxypeptidase activity3.83E-03
20GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.69E-03
21GO:0003777: microtubule motor activity5.03E-03
22GO:0022857: transmembrane transporter activity5.74E-03
23GO:0051082: unfolded protein binding5.98E-03
24GO:0030170: pyridoxal phosphate binding7.51E-03
25GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding7.64E-03
26GO:0046983: protein dimerization activity8.22E-03
27GO:0042802: identical protein binding1.03E-02
28GO:0008168: methyltransferase activity1.16E-02
29GO:0003700: transcription factor activity, sequence-specific DNA binding1.22E-02
30GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.57E-02
31GO:0042803: protein homodimerization activity1.62E-02
32GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.70E-02
33GO:0043565: sequence-specific DNA binding3.17E-02
34GO:0044212: transcription regulatory region DNA binding4.54E-02
35GO:0003677: DNA binding4.94E-02
RankGO TermAdjusted P value
1GO:0016605: PML body6.55E-05
2GO:0030286: dynein complex1.37E-04
3GO:0016604: nuclear body5.23E-04
4GO:0005875: microtubule associated complex9.38E-04
5GO:0032580: Golgi cisterna membrane2.04E-03
6GO:0031966: mitochondrial membrane4.47E-03
7GO:0010008: endosome membrane5.38E-03
8GO:0009507: chloroplast7.46E-03
9GO:0031969: chloroplast membrane1.38E-02
10GO:0005777: peroxisome3.03E-02
11GO:0005773: vacuole3.29E-02
12GO:0005768: endosome4.21E-02
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Gene type



Gene DE type