Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G15110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
2GO:0005996: monosaccharide metabolic process0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006114: glycerol biosynthetic process0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:0034337: RNA folding0.00E+00
13GO:0006429: leucyl-tRNA aminoacylation0.00E+00
14GO:2000505: regulation of energy homeostasis0.00E+00
15GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
16GO:0061635: regulation of protein complex stability0.00E+00
17GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
18GO:0010027: thylakoid membrane organization6.53E-12
19GO:0015979: photosynthesis2.15E-09
20GO:0018026: peptidyl-lysine monomethylation2.10E-06
21GO:0010196: nonphotochemical quenching2.15E-06
22GO:0006000: fructose metabolic process7.70E-06
23GO:0009773: photosynthetic electron transport in photosystem I1.56E-05
24GO:0010021: amylopectin biosynthetic process3.23E-05
25GO:0010236: plastoquinone biosynthetic process5.18E-05
26GO:0006418: tRNA aminoacylation for protein translation5.99E-05
27GO:0016117: carotenoid biosynthetic process1.17E-04
28GO:0009642: response to light intensity1.78E-04
29GO:0000967: rRNA 5'-end processing2.11E-04
30GO:0006438: valyl-tRNA aminoacylation2.11E-04
31GO:0000481: maturation of 5S rRNA2.11E-04
32GO:0042371: vitamin K biosynthetic process2.11E-04
33GO:0043609: regulation of carbon utilization2.11E-04
34GO:0043007: maintenance of rDNA2.11E-04
35GO:0000476: maturation of 4.5S rRNA2.11E-04
36GO:0009657: plastid organization2.22E-04
37GO:0032544: plastid translation2.22E-04
38GO:0006002: fructose 6-phosphate metabolic process2.22E-04
39GO:0009658: chloroplast organization2.34E-04
40GO:0010206: photosystem II repair2.70E-04
41GO:0009793: embryo development ending in seed dormancy3.18E-04
42GO:0043085: positive regulation of catalytic activity4.36E-04
43GO:0006415: translational termination4.36E-04
44GO:0018298: protein-chromophore linkage4.62E-04
45GO:0016560: protein import into peroxisome matrix, docking4.71E-04
46GO:0006432: phenylalanyl-tRNA aminoacylation4.71E-04
47GO:0090342: regulation of cell aging4.71E-04
48GO:0097054: L-glutamate biosynthetic process4.71E-04
49GO:0030388: fructose 1,6-bisphosphate metabolic process4.71E-04
50GO:0034470: ncRNA processing4.71E-04
51GO:0006790: sulfur compound metabolic process4.99E-04
52GO:0019253: reductive pentose-phosphate cycle6.38E-04
53GO:0034599: cellular response to oxidative stress6.60E-04
54GO:0046854: phosphatidylinositol phosphorylation7.14E-04
55GO:0090391: granum assembly7.67E-04
56GO:0071492: cellular response to UV-A7.67E-04
57GO:0016050: vesicle organization7.67E-04
58GO:0005977: glycogen metabolic process7.67E-04
59GO:0006636: unsaturated fatty acid biosynthetic process7.93E-04
60GO:0009768: photosynthesis, light harvesting in photosystem I9.63E-04
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.09E-03
62GO:0006515: misfolded or incompletely synthesized protein catabolic process1.09E-03
63GO:0006020: inositol metabolic process1.09E-03
64GO:0006537: glutamate biosynthetic process1.09E-03
65GO:0006546: glycine catabolic process1.45E-03
66GO:0051205: protein insertion into membrane1.45E-03
67GO:0006021: inositol biosynthetic process1.45E-03
68GO:0010109: regulation of photosynthesis1.45E-03
69GO:0019676: ammonia assimilation cycle1.45E-03
70GO:0071486: cellular response to high light intensity1.45E-03
71GO:0006109: regulation of carbohydrate metabolic process1.45E-03
72GO:0045727: positive regulation of translation1.45E-03
73GO:0015994: chlorophyll metabolic process1.45E-03
74GO:0006662: glycerol ether metabolic process1.71E-03
75GO:0016120: carotene biosynthetic process1.85E-03
76GO:0032543: mitochondrial translation1.85E-03
77GO:0045038: protein import into chloroplast thylakoid membrane1.85E-03
78GO:0016123: xanthophyll biosynthetic process1.85E-03
79GO:0019252: starch biosynthetic process1.97E-03
80GO:0042793: transcription from plastid promoter2.28E-03
81GO:0046855: inositol phosphate dephosphorylation2.28E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.28E-03
83GO:0042372: phylloquinone biosynthetic process2.74E-03
84GO:1901259: chloroplast rRNA processing2.74E-03
85GO:0030488: tRNA methylation2.74E-03
86GO:0009772: photosynthetic electron transport in photosystem II3.23E-03
87GO:0071446: cellular response to salicylic acid stimulus3.23E-03
88GO:0015995: chlorophyll biosynthetic process3.56E-03
89GO:0006605: protein targeting3.74E-03
90GO:0032508: DNA duplex unwinding3.74E-03
91GO:0016559: peroxisome fission3.74E-03
92GO:0048564: photosystem I assembly3.74E-03
93GO:0005978: glycogen biosynthetic process3.74E-03
94GO:0016311: dephosphorylation3.75E-03
95GO:0017004: cytochrome complex assembly4.29E-03
96GO:2000031: regulation of salicylic acid mediated signaling pathway4.29E-03
97GO:0071482: cellular response to light stimulus4.29E-03
98GO:0005982: starch metabolic process5.44E-03
99GO:0010205: photoinhibition5.44E-03
100GO:0048829: root cap development6.06E-03
101GO:0019684: photosynthesis, light reaction6.69E-03
102GO:0009089: lysine biosynthetic process via diaminopimelate6.69E-03
103GO:0055114: oxidation-reduction process6.69E-03
104GO:0009073: aromatic amino acid family biosynthetic process6.69E-03
105GO:0000272: polysaccharide catabolic process6.69E-03
106GO:0018119: peptidyl-cysteine S-nitrosylation6.69E-03
107GO:0016485: protein processing6.69E-03
108GO:0009735: response to cytokinin6.81E-03
109GO:0045037: protein import into chloroplast stroma7.36E-03
110GO:0005983: starch catabolic process7.36E-03
111GO:0010628: positive regulation of gene expression8.04E-03
112GO:0006006: glucose metabolic process8.04E-03
113GO:0006094: gluconeogenesis8.04E-03
114GO:0005986: sucrose biosynthetic process8.04E-03
115GO:0006364: rRNA processing8.67E-03
116GO:0010020: chloroplast fission8.75E-03
117GO:0010207: photosystem II assembly8.75E-03
118GO:0005985: sucrose metabolic process9.48E-03
119GO:0006096: glycolytic process1.03E-02
120GO:0045454: cell redox homeostasis1.12E-02
121GO:0008299: isoprenoid biosynthetic process1.18E-02
122GO:0016575: histone deacetylation1.18E-02
123GO:0010431: seed maturation1.26E-02
124GO:0019915: lipid storage1.26E-02
125GO:0061077: chaperone-mediated protein folding1.26E-02
126GO:0006396: RNA processing1.27E-02
127GO:0040007: growth1.43E-02
128GO:0006281: DNA repair1.46E-02
129GO:0009561: megagametogenesis1.52E-02
130GO:0042631: cellular response to water deprivation1.70E-02
131GO:0009646: response to absence of light1.88E-02
132GO:0006633: fatty acid biosynthetic process1.95E-02
133GO:0006413: translational initiation2.00E-02
134GO:0000302: response to reactive oxygen species2.08E-02
135GO:0071554: cell wall organization or biogenesis2.08E-02
136GO:0007623: circadian rhythm2.14E-02
137GO:0010090: trichome morphogenesis2.28E-02
138GO:1901657: glycosyl compound metabolic process2.28E-02
139GO:0009416: response to light stimulus2.99E-02
140GO:0010218: response to far red light3.50E-02
141GO:0009834: plant-type secondary cell wall biogenesis3.50E-02
142GO:0006499: N-terminal protein myristoylation3.50E-02
143GO:0009409: response to cold3.52E-02
144GO:0009631: cold acclimation3.62E-02
145GO:0048527: lateral root development3.62E-02
146GO:0009637: response to blue light3.86E-02
147GO:0009853: photorespiration3.86E-02
148GO:0030001: metal ion transport4.24E-02
149GO:0010114: response to red light4.63E-02
150GO:0009744: response to sucrose4.63E-02
151GO:0009644: response to high light intensity4.89E-02
RankGO TermAdjusted P value
1GO:0010357: homogentisate solanesyltransferase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0016166: phytoene dehydrogenase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0046408: chlorophyll synthetase activity0.00E+00
13GO:0010355: homogentisate farnesyltransferase activity0.00E+00
14GO:0043136: glycerol-3-phosphatase activity0.00E+00
15GO:0000121: glycerol-1-phosphatase activity0.00E+00
16GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
17GO:0090711: FMN hydrolase activity0.00E+00
18GO:0016149: translation release factor activity, codon specific1.76E-05
19GO:0016279: protein-lysine N-methyltransferase activity3.23E-05
20GO:2001070: starch binding7.64E-05
21GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.06E-04
22GO:0004812: aminoacyl-tRNA ligase activity1.17E-04
23GO:0019203: carbohydrate phosphatase activity2.11E-04
24GO:0045485: omega-6 fatty acid desaturase activity2.11E-04
25GO:0004832: valine-tRNA ligase activity2.11E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.11E-04
27GO:0016041: glutamate synthase (ferredoxin) activity2.11E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.11E-04
29GO:0050308: sugar-phosphatase activity2.11E-04
30GO:0003747: translation release factor activity2.70E-04
31GO:0016168: chlorophyll binding3.51E-04
32GO:0008047: enzyme activator activity3.76E-04
33GO:0019843: rRNA binding4.12E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity4.71E-04
35GO:0004826: phenylalanine-tRNA ligase activity4.71E-04
36GO:0019156: isoamylase activity4.71E-04
37GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.71E-04
38GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.71E-04
39GO:0010291: carotene beta-ring hydroxylase activity4.71E-04
40GO:0047746: chlorophyllase activity4.71E-04
41GO:0010297: heteropolysaccharide binding4.71E-04
42GO:0004047: aminomethyltransferase activity4.71E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity4.71E-04
44GO:0004312: fatty acid synthase activity4.71E-04
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.71E-04
46GO:0008934: inositol monophosphate 1-phosphatase activity4.71E-04
47GO:0003844: 1,4-alpha-glucan branching enzyme activity4.71E-04
48GO:0031072: heat shock protein binding5.67E-04
49GO:0002161: aminoacyl-tRNA editing activity7.67E-04
50GO:0004751: ribose-5-phosphate isomerase activity7.67E-04
51GO:0070402: NADPH binding7.67E-04
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.67E-04
53GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity7.67E-04
54GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups7.67E-04
55GO:0015462: ATPase-coupled protein transmembrane transporter activity7.67E-04
56GO:0043169: cation binding7.67E-04
57GO:0003913: DNA photolyase activity7.67E-04
58GO:0031409: pigment binding7.93E-04
59GO:0016787: hydrolase activity8.68E-04
60GO:0005528: FK506 binding8.76E-04
61GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.04E-03
62GO:0048487: beta-tubulin binding1.09E-03
63GO:0016851: magnesium chelatase activity1.09E-03
64GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.09E-03
65GO:0004659: prenyltransferase activity1.45E-03
66GO:0004045: aminoacyl-tRNA hydrolase activity1.45E-03
67GO:0047134: protein-disulfide reductase activity1.47E-03
68GO:0004791: thioredoxin-disulfide reductase activity1.83E-03
69GO:0004040: amidase activity1.85E-03
70GO:0051538: 3 iron, 4 sulfur cluster binding1.85E-03
71GO:0004130: cytochrome-c peroxidase activity2.28E-03
72GO:0004556: alpha-amylase activity2.28E-03
73GO:0016688: L-ascorbate peroxidase activity2.28E-03
74GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.39E-03
75GO:0004017: adenylate kinase activity2.74E-03
76GO:0009881: photoreceptor activity3.23E-03
77GO:0016491: oxidoreductase activity3.24E-03
78GO:0004033: aldo-keto reductase (NADP) activity3.74E-03
79GO:0008236: serine-type peptidase activity3.75E-03
80GO:0008173: RNA methyltransferase activity4.29E-03
81GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.29E-03
82GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.85E-03
83GO:0003746: translation elongation factor activity4.99E-03
84GO:0004161: dimethylallyltranstransferase activity6.69E-03
85GO:0043621: protein self-association6.95E-03
86GO:0000049: tRNA binding7.36E-03
87GO:0004565: beta-galactosidase activity8.04E-03
88GO:0003887: DNA-directed DNA polymerase activity1.02E-02
89GO:0004857: enzyme inhibitor activity1.10E-02
90GO:0004407: histone deacetylase activity1.10E-02
91GO:0051082: unfolded protein binding1.24E-02
92GO:0004176: ATP-dependent peptidase activity1.26E-02
93GO:0015035: protein disulfide oxidoreductase activity1.27E-02
94GO:0003729: mRNA binding1.33E-02
95GO:0022891: substrate-specific transmembrane transporter activity1.43E-02
96GO:0003924: GTPase activity1.46E-02
97GO:0003756: protein disulfide isomerase activity1.52E-02
98GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.59E-02
99GO:0005525: GTP binding1.65E-02
100GO:0050662: coenzyme binding1.88E-02
101GO:0016853: isomerase activity1.88E-02
102GO:0003684: damaged DNA binding2.38E-02
103GO:0008483: transaminase activity2.49E-02
104GO:0003743: translation initiation factor activity2.51E-02
105GO:0016413: O-acetyltransferase activity2.59E-02
106GO:0042802: identical protein binding2.73E-02
107GO:0004721: phosphoprotein phosphatase activity3.04E-02
108GO:0102483: scopolin beta-glucosidase activity3.04E-02
109GO:0000287: magnesium ion binding3.26E-02
110GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.27E-02
111GO:0015238: drug transmembrane transporter activity3.38E-02
112GO:0030145: manganese ion binding3.62E-02
113GO:0003993: acid phosphatase activity3.99E-02
114GO:0008422: beta-glucosidase activity4.11E-02
115GO:0003723: RNA binding4.16E-02
116GO:0050661: NADP binding4.24E-02
117GO:0046872: metal ion binding4.40E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0043233: organelle lumen0.00E+00
3GO:0010368: chloroplast isoamylase complex0.00E+00
4GO:0009507: chloroplast4.98E-73
5GO:0009570: chloroplast stroma2.03E-34
6GO:0009534: chloroplast thylakoid5.12E-30
7GO:0009535: chloroplast thylakoid membrane3.67E-25
8GO:0009941: chloroplast envelope7.13E-21
9GO:0009543: chloroplast thylakoid lumen8.16E-12
10GO:0009579: thylakoid1.72E-09
11GO:0031977: thylakoid lumen1.71E-07
12GO:0000427: plastid-encoded plastid RNA polymerase complex2.10E-06
13GO:0009508: plastid chromosome2.45E-05
14GO:0009706: chloroplast inner membrane2.82E-05
15GO:0010287: plastoglobule4.19E-05
16GO:0009515: granal stacked thylakoid2.11E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.11E-04
18GO:0009783: photosystem II antenna complex2.11E-04
19GO:0009295: nucleoid2.79E-04
20GO:0031969: chloroplast membrane3.52E-04
21GO:0032040: small-subunit processome4.99E-04
22GO:0030095: chloroplast photosystem II6.38E-04
23GO:0009509: chromoplast7.67E-04
24GO:0005782: peroxisomal matrix7.67E-04
25GO:0010007: magnesium chelatase complex7.67E-04
26GO:0009654: photosystem II oxygen evolving complex9.63E-04
27GO:0009522: photosystem I1.83E-03
28GO:0019898: extrinsic component of membrane1.97E-03
29GO:0005840: ribosome2.06E-03
30GO:0005623: cell2.66E-03
31GO:0010319: stromule2.70E-03
32GO:0005759: mitochondrial matrix3.43E-03
33GO:0009501: amyloplast3.74E-03
34GO:0009538: photosystem I reaction center3.74E-03
35GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.85E-03
36GO:0048046: apoplast8.58E-03
37GO:0030076: light-harvesting complex9.48E-03
38GO:0042651: thylakoid membrane1.18E-02
39GO:0009523: photosystem II1.98E-02
40GO:0016020: membrane2.09E-02
41GO:0030529: intracellular ribonucleoprotein complex2.70E-02
42GO:0009536: plastid3.05E-02
43GO:0009707: chloroplast outer membrane3.27E-02
44GO:0005777: peroxisome3.55E-02
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Gene type



Gene DE type