GO Enrichment Analysis of Co-expressed Genes with
AT4G13720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 4 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 5 | GO:0006021: inositol biosynthetic process | 3.86E-06 |
| 6 | GO:0046855: inositol phosphate dephosphorylation | 1.00E-05 |
| 7 | GO:0048564: photosystem I assembly | 2.62E-05 |
| 8 | GO:0018298: protein-chromophore linkage | 4.23E-05 |
| 9 | GO:0000476: maturation of 4.5S rRNA | 6.10E-05 |
| 10 | GO:0009443: pyridoxal 5'-phosphate salvage | 6.10E-05 |
| 11 | GO:0000967: rRNA 5'-end processing | 6.10E-05 |
| 12 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 6.10E-05 |
| 13 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.10E-05 |
| 14 | GO:1904964: positive regulation of phytol biosynthetic process | 6.10E-05 |
| 15 | GO:0071277: cellular response to calcium ion | 6.10E-05 |
| 16 | GO:0006790: sulfur compound metabolic process | 8.59E-05 |
| 17 | GO:0010207: photosystem II assembly | 1.14E-04 |
| 18 | GO:0046854: phosphatidylinositol phosphorylation | 1.30E-04 |
| 19 | GO:0034470: ncRNA processing | 1.48E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.48E-04 |
| 21 | GO:0000256: allantoin catabolic process | 1.48E-04 |
| 22 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.48E-04 |
| 23 | GO:0015979: photosynthesis | 1.56E-04 |
| 24 | GO:0090391: granum assembly | 2.51E-04 |
| 25 | GO:0010136: ureide catabolic process | 2.51E-04 |
| 26 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.65E-04 |
| 27 | GO:0006145: purine nucleobase catabolic process | 3.65E-04 |
| 28 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 3.65E-04 |
| 29 | GO:0042989: sequestering of actin monomers | 3.65E-04 |
| 30 | GO:0006020: inositol metabolic process | 3.65E-04 |
| 31 | GO:0016558: protein import into peroxisome matrix | 6.19E-04 |
| 32 | GO:0030041: actin filament polymerization | 6.19E-04 |
| 33 | GO:0016311: dephosphorylation | 7.29E-04 |
| 34 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 7.57E-04 |
| 35 | GO:0042549: photosystem II stabilization | 7.57E-04 |
| 36 | GO:0042254: ribosome biogenesis | 8.19E-04 |
| 37 | GO:0071470: cellular response to osmotic stress | 9.01E-04 |
| 38 | GO:0080167: response to karrikin | 1.04E-03 |
| 39 | GO:0009645: response to low light intensity stimulus | 1.05E-03 |
| 40 | GO:0051510: regulation of unidimensional cell growth | 1.05E-03 |
| 41 | GO:0010196: nonphotochemical quenching | 1.05E-03 |
| 42 | GO:0030091: protein repair | 1.21E-03 |
| 43 | GO:0009704: de-etiolation | 1.21E-03 |
| 44 | GO:0009642: response to light intensity | 1.21E-03 |
| 45 | GO:0009644: response to high light intensity | 1.31E-03 |
| 46 | GO:0032544: plastid translation | 1.38E-03 |
| 47 | GO:0009657: plastid organization | 1.38E-03 |
| 48 | GO:0017004: cytochrome complex assembly | 1.38E-03 |
| 49 | GO:0009821: alkaloid biosynthetic process | 1.55E-03 |
| 50 | GO:0090333: regulation of stomatal closure | 1.55E-03 |
| 51 | GO:0006364: rRNA processing | 1.62E-03 |
| 52 | GO:0006415: translational termination | 2.12E-03 |
| 53 | GO:0006006: glucose metabolic process | 2.52E-03 |
| 54 | GO:0019253: reductive pentose-phosphate cycle | 2.74E-03 |
| 55 | GO:0019853: L-ascorbic acid biosynthetic process | 2.96E-03 |
| 56 | GO:0090351: seedling development | 2.96E-03 |
| 57 | GO:0006833: water transport | 3.18E-03 |
| 58 | GO:0007010: cytoskeleton organization | 3.42E-03 |
| 59 | GO:0008299: isoprenoid biosynthetic process | 3.65E-03 |
| 60 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.65E-03 |
| 61 | GO:0055085: transmembrane transport | 4.71E-03 |
| 62 | GO:0034220: ion transmembrane transport | 5.19E-03 |
| 63 | GO:0000413: protein peptidyl-prolyl isomerization | 5.19E-03 |
| 64 | GO:0006635: fatty acid beta-oxidation | 6.32E-03 |
| 65 | GO:0002229: defense response to oomycetes | 6.32E-03 |
| 66 | GO:0010193: response to ozone | 6.32E-03 |
| 67 | GO:0010027: thylakoid membrane organization | 8.16E-03 |
| 68 | GO:0042128: nitrate assimilation | 8.81E-03 |
| 69 | GO:0015995: chlorophyll biosynthetic process | 9.14E-03 |
| 70 | GO:0048527: lateral root development | 1.09E-02 |
| 71 | GO:0034599: cellular response to oxidative stress | 1.20E-02 |
| 72 | GO:0046686: response to cadmium ion | 1.50E-02 |
| 73 | GO:0006855: drug transmembrane transport | 1.55E-02 |
| 74 | GO:0010224: response to UV-B | 1.76E-02 |
| 75 | GO:0006096: glycolytic process | 1.93E-02 |
| 76 | GO:0055114: oxidation-reduction process | 1.99E-02 |
| 77 | GO:0006396: RNA processing | 2.25E-02 |
| 78 | GO:0006457: protein folding | 2.56E-02 |
| 79 | GO:0009058: biosynthetic process | 2.68E-02 |
| 80 | GO:0009845: seed germination | 2.73E-02 |
| 81 | GO:0006413: translational initiation | 3.09E-02 |
| 82 | GO:0007623: circadian rhythm | 3.25E-02 |
| 83 | GO:0009658: chloroplast organization | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 2 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 6 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 7 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 8 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 9 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.16E-07 |
| 10 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.16E-07 |
| 11 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.16E-07 |
| 12 | GO:0070402: NADPH binding | 8.32E-07 |
| 13 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.44E-05 |
| 14 | GO:0016168: chlorophyll binding | 3.03E-05 |
| 15 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 6.10E-05 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.12E-04 |
| 17 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.48E-04 |
| 18 | GO:0005528: FK506 binding | 1.63E-04 |
| 19 | GO:0022891: substrate-specific transmembrane transporter activity | 2.42E-04 |
| 20 | GO:0004751: ribose-5-phosphate isomerase activity | 2.51E-04 |
| 21 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.51E-04 |
| 22 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.51E-04 |
| 23 | GO:0016853: isomerase activity | 3.60E-04 |
| 24 | GO:0016149: translation release factor activity, codon specific | 3.65E-04 |
| 25 | GO:0043495: protein anchor | 4.88E-04 |
| 26 | GO:0003785: actin monomer binding | 6.19E-04 |
| 27 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 9.01E-04 |
| 28 | GO:0019899: enzyme binding | 1.05E-03 |
| 29 | GO:0004033: aldo-keto reductase (NADP) activity | 1.21E-03 |
| 30 | GO:0003747: translation release factor activity | 1.55E-03 |
| 31 | GO:0016844: strictosidine synthase activity | 1.73E-03 |
| 32 | GO:0031409: pigment binding | 3.18E-03 |
| 33 | GO:0043424: protein histidine kinase binding | 3.65E-03 |
| 34 | GO:0015250: water channel activity | 8.16E-03 |
| 35 | GO:0015238: drug transmembrane transporter activity | 1.02E-02 |
| 36 | GO:0030145: manganese ion binding | 1.09E-02 |
| 37 | GO:0050897: cobalt ion binding | 1.09E-02 |
| 38 | GO:0046872: metal ion binding | 1.15E-02 |
| 39 | GO:0003993: acid phosphatase activity | 1.20E-02 |
| 40 | GO:0016491: oxidoreductase activity | 1.21E-02 |
| 41 | GO:0050661: NADP binding | 1.27E-02 |
| 42 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.47E-02 |
| 43 | GO:0051287: NAD binding | 1.59E-02 |
| 44 | GO:0003779: actin binding | 2.15E-02 |
| 45 | GO:0019843: rRNA binding | 2.58E-02 |
| 46 | GO:0015297: antiporter activity | 3.14E-02 |
| 47 | GO:0003743: translation initiation factor activity | 3.63E-02 |
| 48 | GO:0005509: calcium ion binding | 3.69E-02 |
| 49 | GO:0042802: identical protein binding | 3.85E-02 |
| 50 | GO:0050660: flavin adenine dinucleotide binding | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.84E-26 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 6.25E-25 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 6.15E-12 |
| 4 | GO:0009534: chloroplast thylakoid | 6.40E-11 |
| 5 | GO:0009579: thylakoid | 1.58E-09 |
| 6 | GO:0031977: thylakoid lumen | 2.58E-06 |
| 7 | GO:0009523: photosystem II | 1.34E-05 |
| 8 | GO:0009570: chloroplast stroma | 3.39E-05 |
| 9 | GO:0009515: granal stacked thylakoid | 6.10E-05 |
| 10 | GO:0009782: photosystem I antenna complex | 6.10E-05 |
| 11 | GO:0009941: chloroplast envelope | 6.78E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 1.14E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 1.82E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 3.87E-04 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 1.05E-03 |
| 16 | GO:0042644: chloroplast nucleoid | 1.55E-03 |
| 17 | GO:0009508: plastid chromosome | 2.52E-03 |
| 18 | GO:0005938: cell cortex | 2.52E-03 |
| 19 | GO:0010287: plastoglobule | 2.71E-03 |
| 20 | GO:0030076: light-harvesting complex | 2.96E-03 |
| 21 | GO:0042651: thylakoid membrane | 3.65E-03 |
| 22 | GO:0015629: actin cytoskeleton | 4.40E-03 |
| 23 | GO:0005778: peroxisomal membrane | 7.52E-03 |
| 24 | GO:0009295: nucleoid | 7.52E-03 |
| 25 | GO:0015934: large ribosomal subunit | 1.09E-02 |
| 26 | GO:0005747: mitochondrial respiratory chain complex I | 1.97E-02 |
| 27 | GO:0005759: mitochondrial matrix | 3.04E-02 |
| 28 | GO:0005840: ribosome | 4.19E-02 |