co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G13530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0016093: polyprenol metabolic process	0.00E+00
3	GO:0036172: thiamine salvage	0.00E+00
4	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0045740: positive regulation of DNA replication	0.00E+00
7	GO:0006720: isoprenoid metabolic process	0.00E+00
8	GO:0048870: cell motility	0.00E+00
9	GO:0018293: protein-FAD linkage	0.00E+00
10	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
11	GO:0032780: negative regulation of ATPase activity	0.00E+00
12	GO:0051776: detection of redox state	0.00E+00
13	GO:0055114: oxidation-reduction process	6.12E-05
14	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.37E-04
15	GO:0019509: L-methionine salvage from methylthioadenosine	1.37E-04
16	GO:0031468: nuclear envelope reassembly	2.48E-04
17	GO:0006567: threonine catabolic process	2.48E-04
18	GO:0016487: farnesol metabolic process	2.48E-04
19	GO:0009240: isopentenyl diphosphate biosynthetic process	2.48E-04
20	GO:2000071: regulation of defense response by callose deposition	5.49E-04
21	GO:0007163: establishment or maintenance of cell polarity	5.49E-04
22	GO:1902000: homogentisate catabolic process	5.49E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.49E-04
24	GO:0051252: regulation of RNA metabolic process	5.49E-04
25	GO:0019441: tryptophan catabolic process to kynurenine	5.49E-04
26	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.49E-04
27	GO:0016122: xanthophyll metabolic process	5.49E-04
28	GO:0010343: singlet oxygen-mediated programmed cell death	5.49E-04
29	GO:0048527: lateral root development	7.44E-04
30	GO:0043617: cellular response to sucrose starvation	8.92E-04
31	GO:0015940: pantothenate biosynthetic process	8.92E-04
32	GO:0071492: cellular response to UV-A	8.92E-04
33	GO:0006760: folic acid-containing compound metabolic process	8.92E-04
34	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	8.92E-04
35	GO:0009072: aromatic amino acid family metabolic process	8.92E-04
36	GO:0009399: nitrogen fixation	1.27E-03
37	GO:0009647: skotomorphogenesis	1.27E-03
38	GO:0009963: positive regulation of flavonoid biosynthetic process	1.27E-03
39	GO:0006516: glycoprotein catabolic process	1.27E-03
40	GO:0006572: tyrosine catabolic process	1.27E-03
41	GO:0006012: galactose metabolic process	1.57E-03
42	GO:0009649: entrainment of circadian clock	1.70E-03
43	GO:0006749: glutathione metabolic process	1.70E-03
44	GO:0000003: reproduction	1.70E-03
45	GO:0034613: cellular protein localization	1.70E-03
46	GO:0006542: glutamine biosynthetic process	1.70E-03
47	GO:0070534: protein K63-linked ubiquitination	1.70E-03
48	GO:0010109: regulation of photosynthesis	1.70E-03
49	GO:0015976: carbon utilization	1.70E-03
50	GO:0006545: glycine biosynthetic process	1.70E-03
51	GO:0071486: cellular response to high light intensity	1.70E-03
52	GO:0009765: photosynthesis, light harvesting	1.70E-03
53	GO:0071249: cellular response to nitrate	1.70E-03
54	GO:0006221: pyrimidine nucleotide biosynthetic process	1.70E-03
55	GO:0080022: primary root development	1.99E-03
56	GO:0006520: cellular amino acid metabolic process	2.15E-03
57	GO:0000304: response to singlet oxygen	2.17E-03
58	GO:0030041: actin filament polymerization	2.17E-03
59	GO:0010117: photoprotection	2.17E-03
60	GO:0046283: anthocyanin-containing compound metabolic process	2.17E-03
61	GO:0009229: thiamine diphosphate biosynthetic process	2.17E-03
62	GO:0018344: protein geranylgeranylation	2.17E-03
63	GO:0007035: vacuolar acidification	2.67E-03
64	GO:0009228: thiamine biosynthetic process	2.67E-03
65	GO:0006796: phosphate-containing compound metabolic process	2.67E-03
66	GO:0009117: nucleotide metabolic process	2.67E-03
67	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.67E-03
68	GO:0006301: postreplication repair	2.67E-03
69	GO:0016070: RNA metabolic process	2.67E-03
70	GO:0006555: methionine metabolic process	2.67E-03
71	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.67E-03
72	GO:0031053: primary miRNA processing	2.67E-03
73	GO:0010016: shoot system morphogenesis	3.21E-03
74	GO:1901001: negative regulation of response to salt stress	3.21E-03
75	GO:0000082: G1/S transition of mitotic cell cycle	3.79E-03
76	GO:0050790: regulation of catalytic activity	3.79E-03
77	GO:0007050: cell cycle arrest	3.79E-03
78	GO:0030091: protein repair	4.39E-03
79	GO:0009704: de-etiolation	4.39E-03
80	GO:0000028: ribosomal small subunit assembly	4.39E-03
81	GO:0045010: actin nucleation	4.39E-03
82	GO:0045292: mRNA cis splicing, via spliceosome	4.39E-03
83	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.39E-03
84	GO:0008152: metabolic process	5.41E-03
85	GO:0009407: toxin catabolic process	5.48E-03
86	GO:0000902: cell morphogenesis	5.70E-03
87	GO:0098656: anion transmembrane transport	5.70E-03
88	GO:0010043: response to zinc ion	5.75E-03
89	GO:0006535: cysteine biosynthetic process from serine	7.12E-03
90	GO:0000103: sulfate assimilation	7.12E-03
91	GO:0009688: abscisic acid biosynthetic process	7.12E-03
92	GO:0009641: shade avoidance	7.12E-03
93	GO:0009682: induced systemic resistance	7.88E-03
94	GO:0010015: root morphogenesis	7.88E-03
95	GO:0010152: pollen maturation	8.66E-03
96	GO:0009636: response to toxic substance	9.14E-03
97	GO:0010102: lateral root morphogenesis	9.47E-03
98	GO:0009691: cytokinin biosynthetic process	9.47E-03
99	GO:0006829: zinc II ion transport	9.47E-03
100	GO:0002237: response to molecule of bacterial origin	1.03E-02
101	GO:0048440: carpel development	1.03E-02
102	GO:0019853: L-ascorbic acid biosynthetic process	1.12E-02
103	GO:0009225: nucleotide-sugar metabolic process	1.12E-02
104	GO:0007030: Golgi organization	1.12E-02
105	GO:0000162: tryptophan biosynthetic process	1.21E-02
106	GO:2000377: regulation of reactive oxygen species metabolic process	1.30E-02
107	GO:0006487: protein N-linked glycosylation	1.30E-02
108	GO:0019344: cysteine biosynthetic process	1.30E-02
109	GO:0009116: nucleoside metabolic process	1.30E-02
110	GO:0048367: shoot system development	1.34E-02
111	GO:0008299: isoprenoid biosynthetic process	1.39E-02
112	GO:0010431: seed maturation	1.49E-02
113	GO:0019915: lipid storage	1.49E-02
114	GO:0016226: iron-sulfur cluster assembly	1.59E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.59E-02
116	GO:0001944: vasculature development	1.69E-02
117	GO:0009693: ethylene biosynthetic process	1.69E-02
118	GO:0048443: stamen development	1.79E-02
119	GO:0032259: methylation	1.85E-02
120	GO:0006629: lipid metabolic process	1.96E-02
121	GO:0010118: stomatal movement	2.01E-02
122	GO:0015991: ATP hydrolysis coupled proton transport	2.01E-02
123	GO:0006662: glycerol ether metabolic process	2.12E-02
124	GO:0061025: membrane fusion	2.23E-02
125	GO:0007059: chromosome segregation	2.23E-02
126	GO:0009646: response to absence of light	2.23E-02
127	GO:0008654: phospholipid biosynthetic process	2.34E-02
128	GO:0009851: auxin biosynthetic process	2.34E-02
129	GO:0002229: defense response to oomycetes	2.46E-02
130	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.46E-02
131	GO:0007264: small GTPase mediated signal transduction	2.58E-02
132	GO:0010090: trichome morphogenesis	2.70E-02
133	GO:0006464: cellular protein modification process	2.82E-02
134	GO:0016579: protein deubiquitination	3.07E-02
135	GO:0051607: defense response to virus	3.07E-02
136	GO:0016126: sterol biosynthetic process	3.19E-02
137	GO:0042128: nitrate assimilation	3.46E-02
138	GO:0015995: chlorophyll biosynthetic process	3.59E-02
139	GO:0010411: xyloglucan metabolic process	3.59E-02
140	GO:0048573: photoperiodism, flowering	3.59E-02
141	GO:0009737: response to abscisic acid	3.62E-02
142	GO:0008219: cell death	3.86E-02
143	GO:0010311: lateral root formation	4.00E-02
144	GO:0010119: regulation of stomatal movement	4.28E-02
145	GO:0035556: intracellular signal transduction	4.28E-02
146	GO:0007568: aging	4.28E-02
147	GO:0006970: response to osmotic stress	4.50E-02
148	GO:0009867: jasmonic acid mediated signaling pathway	4.56E-02
149	GO:0009853: photorespiration	4.56E-02
150	GO:0034599: cellular response to oxidative stress	4.71E-02
151	GO:0006099: tricarboxylic acid cycle	4.71E-02
152	GO:0048366: leaf development	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004334: fumarylacetoacetase activity	0.00E+00
2	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
3	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
4	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
5	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
6	GO:0042030: ATPase inhibitor activity	0.00E+00
7	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
8	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
9	GO:0052670: geraniol kinase activity	0.00E+00
10	GO:0052668: farnesol kinase activity	0.00E+00
11	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
12	GO:0052671: geranylgeraniol kinase activity	0.00E+00
13	GO:0016787: hydrolase activity	5.92E-06
14	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.34E-05
15	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.26E-05
16	GO:0016407: acetyltransferase activity	6.78E-05
17	GO:0004034: aldose 1-epimerase activity	2.28E-04
18	GO:0004793: threonine aldolase activity	2.48E-04
19	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	2.48E-04
20	GO:0016783: sulfurtransferase activity	2.48E-04
21	GO:0019707: protein-cysteine S-acyltransferase activity	2.48E-04
22	GO:0008732: L-allo-threonine aldolase activity	2.48E-04
23	GO:0008782: adenosylhomocysteine nucleosidase activity	2.48E-04
24	GO:0008930: methylthioadenosine nucleosidase activity	2.48E-04
25	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.48E-04
26	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.48E-04
27	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.48E-04
28	GO:0004560: alpha-L-fucosidase activity	2.48E-04
29	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.48E-04
30	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.48E-04
31	GO:0003824: catalytic activity	2.97E-04
32	GO:0004046: aminoacylase activity	5.49E-04
33	GO:0008428: ribonuclease inhibitor activity	5.49E-04
34	GO:0004061: arylformamidase activity	5.49E-04
35	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	5.49E-04
36	GO:0004848: ureidoglycolate hydrolase activity	8.92E-04
37	GO:0004663: Rab geranylgeranyltransferase activity	8.92E-04
38	GO:0032403: protein complex binding	8.92E-04
39	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.92E-04
40	GO:0035529: NADH pyrophosphatase activity	1.27E-03
41	GO:0004792: thiosulfate sulfurtransferase activity	1.27E-03
42	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.27E-03
43	GO:0000339: RNA cap binding	1.27E-03
44	GO:0009001: serine O-acetyltransferase activity	1.27E-03
45	GO:0000254: C-4 methylsterol oxidase activity	1.27E-03
46	GO:0004301: epoxide hydrolase activity	1.70E-03
47	GO:0004834: tryptophan synthase activity	1.70E-03
48	GO:0010011: auxin binding	1.70E-03
49	GO:0008948: oxaloacetate decarboxylase activity	2.17E-03
50	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.17E-03
51	GO:0004356: glutamate-ammonia ligase activity	2.17E-03
52	GO:0016853: isomerase activity	2.31E-03
53	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.64E-03
54	GO:0051117: ATPase binding	2.67E-03
55	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.67E-03
56	GO:0004605: phosphatidate cytidylyltransferase activity	2.67E-03
57	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.67E-03
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.01E-03
59	GO:0070300: phosphatidic acid binding	3.21E-03
60	GO:0004427: inorganic diphosphatase activity	3.79E-03
61	GO:0016621: cinnamoyl-CoA reductase activity	3.79E-03
62	GO:0035064: methylated histone binding	4.39E-03
63	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.39E-03
64	GO:0004806: triglyceride lipase activity	4.49E-03
65	GO:0015078: hydrogen ion transmembrane transporter activity	5.03E-03
66	GO:0016491: oxidoreductase activity	5.15E-03
67	GO:0071949: FAD binding	5.70E-03
68	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.70E-03
69	GO:0047617: acyl-CoA hydrolase activity	6.40E-03
70	GO:0004364: glutathione transferase activity	7.80E-03
71	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.88E-03
72	GO:0008168: methyltransferase activity	8.66E-03
73	GO:0005315: inorganic phosphate transmembrane transporter activity	9.47E-03
74	GO:0004089: carbonate dehydratase activity	9.47E-03
75	GO:0051287: NAD binding	9.85E-03
76	GO:0051536: iron-sulfur cluster binding	1.30E-02
77	GO:0043130: ubiquitin binding	1.30E-02
78	GO:0005528: FK506 binding	1.30E-02
79	GO:0004386: helicase activity	1.71E-02
80	GO:0008514: organic anion transmembrane transporter activity	1.79E-02
81	GO:0047134: protein-disulfide reductase activity	1.90E-02
82	GO:0046873: metal ion transmembrane transporter activity	2.12E-02
83	GO:0050662: coenzyme binding	2.23E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	2.23E-02
85	GO:0048038: quinone binding	2.46E-02
86	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.46E-02
87	GO:0004197: cysteine-type endopeptidase activity	2.58E-02
88	GO:0008483: transaminase activity	2.94E-02
89	GO:0016597: amino acid binding	3.07E-02
90	GO:0016413: O-acetyltransferase activity	3.07E-02
91	GO:0016168: chlorophyll binding	3.32E-02
92	GO:0042802: identical protein binding	3.44E-02
93	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.14E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	4.26E-02
95	GO:0050897: cobalt ion binding	4.28E-02
96	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	2.16E-06
2	GO:0005845: mRNA cap binding complex	2.48E-04
3	GO:0000152: nuclear ubiquitin ligase complex	2.48E-04
4	GO:0005765: lysosomal membrane	5.47E-04
5	GO:0005846: nuclear cap binding complex	5.49E-04
6	GO:0005829: cytosol	8.05E-04
7	GO:0005759: mitochondrial matrix	8.35E-04
8	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.27E-03
9	GO:0009517: PSII associated light-harvesting complex II	1.70E-03
10	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.70E-03
11	GO:0031372: UBC13-MMS2 complex	1.70E-03
12	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.17E-03
13	GO:0005737: cytoplasm	2.34E-03
14	GO:0031969: chloroplast membrane	2.58E-03
15	GO:0031209: SCAR complex	2.67E-03
16	GO:0009507: chloroplast	2.71E-03
17	GO:0009840: chloroplastic endopeptidase Clp complex	3.21E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.70E-03
19	GO:0005763: mitochondrial small ribosomal subunit	5.70E-03
20	GO:0016604: nuclear body	6.40E-03
21	GO:0005764: lysosome	1.03E-02
22	GO:0005773: vacuole	1.29E-02
23	GO:0005758: mitochondrial intermembrane space	1.30E-02
24	GO:0042651: thylakoid membrane	1.39E-02
25	GO:0045271: respiratory chain complex I	1.39E-02
26	GO:0009532: plastid stroma	1.49E-02
27	GO:0009523: photosystem II	2.34E-02
28	GO:0071944: cell periphery	2.70E-02
29	GO:0005778: peroxisomal membrane	2.94E-02
30	GO:0005615: extracellular space	3.03E-02
31	GO:0005643: nuclear pore	3.86E-02
32	GO:0005777: peroxisome	4.73E-02
33	GO:0005819: spindle	4.86E-02