Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G13360

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018293: protein-FAD linkage0.00E+00
2GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
3GO:0032780: negative regulation of ATPase activity0.00E+00
4GO:0010336: gibberellic acid homeostasis0.00E+00
5GO:0046292: formaldehyde metabolic process0.00E+00
6GO:0045747: positive regulation of Notch signaling pathway0.00E+00
7GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
8GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
9GO:0046294: formaldehyde catabolic process0.00E+00
10GO:0016093: polyprenol metabolic process0.00E+00
11GO:1900088: regulation of inositol biosynthetic process0.00E+00
12GO:0010477: response to sulfur dioxide0.00E+00
13GO:0006069: ethanol oxidation0.00E+00
14GO:0009661: chromoplast organization0.00E+00
15GO:1900091: regulation of raffinose biosynthetic process0.00E+00
16GO:0055114: oxidation-reduction process2.70E-10
17GO:0006508: proteolysis8.50E-07
18GO:0016120: carotene biosynthetic process9.10E-05
19GO:0006555: methionine metabolic process1.32E-04
20GO:0010304: PSII associated light-harvesting complex II catabolic process1.32E-04
21GO:0006099: tricarboxylic acid cycle1.53E-04
22GO:0019509: L-methionine salvage from methylthioadenosine1.81E-04
23GO:0006120: mitochondrial electron transport, NADH to ubiquinone1.81E-04
24GO:0009396: folic acid-containing compound biosynthetic process2.36E-04
25GO:0050790: regulation of catalytic activity2.36E-04
26GO:0080065: 4-alpha-methyl-delta7-sterol oxidation2.97E-04
27GO:0006835: dicarboxylic acid transport2.97E-04
28GO:0019343: cysteine biosynthetic process via cystathionine2.97E-04
29GO:0010036: response to boron-containing substance2.97E-04
30GO:0071266: 'de novo' L-methionine biosynthetic process2.97E-04
31GO:0019346: transsulfuration2.97E-04
32GO:0071461: cellular response to redox state2.97E-04
33GO:0032956: regulation of actin cytoskeleton organization2.97E-04
34GO:0006102: isocitrate metabolic process2.98E-04
35GO:0051603: proteolysis involved in cellular protein catabolic process3.79E-04
36GO:0051453: regulation of intracellular pH5.22E-04
37GO:0035999: tetrahydrofolate interconversion5.22E-04
38GO:0010343: singlet oxygen-mediated programmed cell death6.50E-04
39GO:0080005: photosystem stoichiometry adjustment6.50E-04
40GO:2000030: regulation of response to red or far red light6.50E-04
41GO:0048571: long-day photoperiodism6.50E-04
42GO:0019441: tryptophan catabolic process to kynurenine6.50E-04
43GO:0097054: L-glutamate biosynthetic process6.50E-04
44GO:1904143: positive regulation of carotenoid biosynthetic process6.50E-04
45GO:0080183: response to photooxidative stress6.50E-04
46GO:0009257: 10-formyltetrahydrofolate biosynthetic process6.50E-04
47GO:0043100: pyrimidine nucleobase salvage6.50E-04
48GO:0019419: sulfate reduction1.05E-03
49GO:0044210: 'de novo' CTP biosynthetic process1.05E-03
50GO:1901562: response to paraquat1.05E-03
51GO:0006013: mannose metabolic process1.05E-03
52GO:0031929: TOR signaling1.05E-03
53GO:0071836: nectar secretion1.05E-03
54GO:0044375: regulation of peroxisome size1.05E-03
55GO:0046653: tetrahydrofolate metabolic process1.51E-03
56GO:0006537: glutamate biosynthetic process1.51E-03
57GO:0009113: purine nucleobase biosynthetic process1.51E-03
58GO:0055069: zinc ion homeostasis1.51E-03
59GO:0010148: transpiration1.51E-03
60GO:2001141: regulation of RNA biosynthetic process1.51E-03
61GO:0046713: borate transport1.51E-03
62GO:0016226: iron-sulfur cluster assembly1.86E-03
63GO:0070534: protein K63-linked ubiquitination2.02E-03
64GO:0019676: ammonia assimilation cycle2.02E-03
65GO:0015743: malate transport2.02E-03
66GO:0015846: polyamine transport2.02E-03
67GO:0015994: chlorophyll metabolic process2.02E-03
68GO:0006221: pyrimidine nucleotide biosynthetic process2.02E-03
69GO:0009902: chloroplast relocation2.02E-03
70GO:0006878: cellular copper ion homeostasis2.02E-03
71GO:0034613: cellular protein localization2.02E-03
72GO:0010021: amylopectin biosynthetic process2.02E-03
73GO:0006646: phosphatidylethanolamine biosynthetic process2.02E-03
74GO:0042391: regulation of membrane potential2.57E-03
75GO:0018344: protein geranylgeranylation2.58E-03
76GO:0000304: response to singlet oxygen2.58E-03
77GO:0010236: plastoquinone biosynthetic process2.58E-03
78GO:0006520: cellular amino acid metabolic process2.77E-03
79GO:0010190: cytochrome b6f complex assembly3.19E-03
80GO:0033365: protein localization to organelle3.19E-03
81GO:0009117: nucleotide metabolic process3.19E-03
82GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.19E-03
83GO:0006121: mitochondrial electron transport, succinate to ubiquinone3.19E-03
84GO:0006301: postreplication repair3.19E-03
85GO:0019252: starch biosynthetic process3.20E-03
86GO:1901001: negative regulation of response to salt stress3.84E-03
87GO:0010016: shoot system morphogenesis3.84E-03
88GO:0010189: vitamin E biosynthetic process3.84E-03
89GO:0006955: immune response4.53E-03
90GO:0045454: cell redox homeostasis5.05E-03
91GO:0016559: peroxisome fission5.26E-03
92GO:0030091: protein repair5.26E-03
93GO:0005978: glycogen biosynthetic process5.26E-03
94GO:0009642: response to light intensity5.26E-03
95GO:0050821: protein stabilization5.26E-03
96GO:0009231: riboflavin biosynthetic process5.26E-03
97GO:0042128: nitrate assimilation5.52E-03
98GO:0071482: cellular response to light stimulus6.03E-03
99GO:0015996: chlorophyll catabolic process6.03E-03
100GO:0044030: regulation of DNA methylation6.03E-03
101GO:0090305: nucleic acid phosphodiester bond hydrolysis6.83E-03
102GO:0010206: photosystem II repair6.83E-03
103GO:0009407: toxin catabolic process7.11E-03
104GO:0007568: aging7.46E-03
105GO:0010043: response to zinc ion7.46E-03
106GO:0010205: photoinhibition7.67E-03
107GO:0009098: leucine biosynthetic process7.67E-03
108GO:0009853: photorespiration8.18E-03
109GO:0006896: Golgi to vacuole transport8.55E-03
110GO:0000103: sulfate assimilation8.55E-03
111GO:0045036: protein targeting to chloroplast8.55E-03
112GO:0034599: cellular response to oxidative stress8.56E-03
113GO:0006816: calcium ion transport9.46E-03
114GO:0072593: reactive oxygen species metabolic process9.46E-03
115GO:0009773: photosynthetic electron transport in photosystem I9.46E-03
116GO:0006879: cellular iron ion homeostasis9.46E-03
117GO:0006352: DNA-templated transcription, initiation9.46E-03
118GO:0006790: sulfur compound metabolic process1.04E-02
119GO:0009718: anthocyanin-containing compound biosynthetic process1.14E-02
120GO:0009767: photosynthetic electron transport chain1.14E-02
121GO:0005986: sucrose biosynthetic process1.14E-02
122GO:0050826: response to freezing1.14E-02
123GO:0009636: response to toxic substance1.19E-02
124GO:0046686: response to cadmium ion1.19E-02
125GO:0010207: photosystem II assembly1.24E-02
126GO:0007034: vacuolar transport1.24E-02
127GO:0007031: peroxisome organization1.34E-02
128GO:0006970: response to osmotic stress1.39E-02
129GO:0006487: protein N-linked glycosylation1.56E-02
130GO:0019344: cysteine biosynthetic process1.56E-02
131GO:0051017: actin filament bundle assembly1.56E-02
132GO:0080167: response to karrikin1.67E-02
133GO:0008299: isoprenoid biosynthetic process1.68E-02
134GO:0061077: chaperone-mediated protein folding1.79E-02
135GO:0003333: amino acid transmembrane transport1.79E-02
136GO:0019748: secondary metabolic process1.91E-02
137GO:0006730: one-carbon metabolic process1.91E-02
138GO:0006012: galactose metabolic process2.03E-02
139GO:0009693: ethylene biosynthetic process2.03E-02
140GO:0016117: carotenoid biosynthetic process2.29E-02
141GO:0080022: primary root development2.42E-02
142GO:0006662: glycerol ether metabolic process2.55E-02
143GO:0006814: sodium ion transport2.68E-02
144GO:0009058: biosynthetic process2.69E-02
145GO:0006623: protein targeting to vacuole2.82E-02
146GO:0008654: phospholipid biosynthetic process2.82E-02
147GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.96E-02
148GO:0008152: metabolic process3.07E-02
149GO:0019761: glucosinolate biosynthetic process3.10E-02
150GO:1901657: glycosyl compound metabolic process3.25E-02
151GO:0030163: protein catabolic process3.25E-02
152GO:0006464: cellular protein modification process3.39E-02
153GO:0010286: heat acclimation3.55E-02
154GO:0016579: protein deubiquitination3.70E-02
155GO:0016126: sterol biosynthetic process3.85E-02
156GO:0010027: thylakoid membrane organization3.85E-02
157GO:0006950: response to stress4.32E-02
158GO:0008219: cell death4.65E-02
159GO:0006811: ion transport4.98E-02
RankGO TermAdjusted P value
1GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
2GO:0050342: tocopherol O-methyltransferase activity0.00E+00
3GO:0045436: lycopene beta cyclase activity0.00E+00
4GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
5GO:0015930: glutamate synthase activity0.00E+00
6GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
7GO:0018738: S-formylglutathione hydrolase activity0.00E+00
8GO:0009940: amino-terminal vacuolar sorting propeptide binding0.00E+00
9GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
10GO:0015205: nucleobase transmembrane transporter activity0.00E+00
11GO:0015633: zinc-transporting ATPase activity0.00E+00
12GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
13GO:0017153: sodium:dicarboxylate symporter activity0.00E+00
14GO:0008482: sulfite oxidase activity0.00E+00
15GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
16GO:0042030: ATPase inhibitor activity0.00E+00
17GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity4.02E-06
18GO:0004477: methenyltetrahydrofolate cyclohydrolase activity4.02E-06
19GO:0004450: isocitrate dehydrogenase (NADP+) activity4.02E-06
20GO:0004180: carboxypeptidase activity1.44E-05
21GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.44E-05
22GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity3.21E-05
23GO:0008106: alcohol dehydrogenase (NADP+) activity3.21E-05
24GO:0016491: oxidoreductase activity6.49E-05
25GO:0008236: serine-type peptidase activity8.41E-05
26GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.32E-04
27GO:0004176: ATP-dependent peptidase activity1.43E-04
28GO:0005261: cation channel activity1.81E-04
29GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.97E-04
30GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity2.97E-04
31GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity2.97E-04
32GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.97E-04
33GO:0004123: cystathionine gamma-lyase activity2.97E-04
34GO:0046480: galactolipid galactosyltransferase activity2.97E-04
35GO:0080079: cellobiose glucosidase activity2.97E-04
36GO:0004733: pyridoxamine-phosphate oxidase activity2.97E-04
37GO:0016776: phosphotransferase activity, phosphate group as acceptor2.97E-04
38GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity2.97E-04
39GO:0016780: phosphotransferase activity, for other substituted phosphate groups2.97E-04
40GO:0080139: borate efflux transmembrane transporter activity2.97E-04
41GO:0016783: sulfurtransferase activity2.97E-04
42GO:0008802: betaine-aldehyde dehydrogenase activity2.97E-04
43GO:0004307: ethanolaminephosphotransferase activity2.97E-04
44GO:0004008: copper-exporting ATPase activity2.97E-04
45GO:0010209: vacuolar sorting signal binding2.97E-04
46GO:0004121: cystathionine beta-lyase activity2.97E-04
47GO:0016041: glutamate synthase (ferredoxin) activity2.97E-04
48GO:0004197: cysteine-type endopeptidase activity4.16E-04
49GO:0015174: basic amino acid transmembrane transporter activity5.22E-04
50GO:0008237: metallopeptidase activity5.29E-04
51GO:0043425: bHLH transcription factor binding6.50E-04
52GO:0033741: adenylyl-sulfate reductase (glutathione) activity6.50E-04
53GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.50E-04
54GO:0015434: cadmium-transporting ATPase activity6.50E-04
55GO:0033201: alpha-1,4-glucan synthase activity6.50E-04
56GO:0050347: trans-octaprenyltranstransferase activity6.50E-04
57GO:0009973: adenylyl-sulfate reductase activity6.50E-04
58GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity6.50E-04
59GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity6.50E-04
60GO:0008551: cadmium-exporting ATPase activity6.50E-04
61GO:0004061: arylformamidase activity6.50E-04
62GO:0004329: formate-tetrahydrofolate ligase activity6.50E-04
63GO:0030572: phosphatidyltransferase activity6.50E-04
64GO:0004046: aminoacylase activity6.50E-04
65GO:0004142: diacylglycerol cholinephosphotransferase activity6.50E-04
66GO:0016463: zinc-exporting ATPase activity6.50E-04
67GO:0015179: L-amino acid transmembrane transporter activity6.50E-04
68GO:0004222: metalloendopeptidase activity9.67E-04
69GO:0010277: chlorophyllide a oxygenase [overall] activity1.05E-03
70GO:0046524: sucrose-phosphate synthase activity1.05E-03
71GO:0004373: glycogen (starch) synthase activity1.05E-03
72GO:0003962: cystathionine gamma-synthase activity1.05E-03
73GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.05E-03
74GO:0004848: ureidoglycolate hydrolase activity1.05E-03
75GO:0004557: alpha-galactosidase activity1.05E-03
76GO:0003861: 3-isopropylmalate dehydratase activity1.05E-03
77GO:0003935: GTP cyclohydrolase II activity1.05E-03
78GO:0004663: Rab geranylgeranyltransferase activity1.05E-03
79GO:0030552: cAMP binding1.14E-03
80GO:0030553: cGMP binding1.14E-03
81GO:0000254: C-4 methylsterol oxidase activity1.51E-03
82GO:0035529: NADH pyrophosphatase activity1.51E-03
83GO:0004792: thiosulfate sulfurtransferase activity1.51E-03
84GO:0003883: CTP synthase activity1.51E-03
85GO:0004416: hydroxyacylglutathione hydrolase activity1.51E-03
86GO:0015203: polyamine transmembrane transporter activity1.51E-03
87GO:0046715: borate transmembrane transporter activity1.51E-03
88GO:0005216: ion channel activity1.55E-03
89GO:0004185: serine-type carboxypeptidase activity1.58E-03
90GO:0001053: plastid sigma factor activity2.02E-03
91GO:0016987: sigma factor activity2.02E-03
92GO:0009011: starch synthase activity2.02E-03
93GO:0008878: glucose-1-phosphate adenylyltransferase activity2.02E-03
94GO:0004301: epoxide hydrolase activity2.02E-03
95GO:0005249: voltage-gated potassium channel activity2.57E-03
96GO:0030551: cyclic nucleotide binding2.57E-03
97GO:0030151: molybdenum ion binding2.58E-03
98GO:0015301: anion:anion antiporter activity2.58E-03
99GO:0008177: succinate dehydrogenase (ubiquinone) activity2.58E-03
100GO:0005452: inorganic anion exchanger activity2.58E-03
101GO:0051538: 3 iron, 4 sulfur cluster binding2.58E-03
102GO:0008234: cysteine-type peptidase activity2.63E-03
103GO:0016853: isomerase activity2.98E-03
104GO:0004029: aldehyde dehydrogenase (NAD) activity3.19E-03
105GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity3.19E-03
106GO:0000293: ferric-chelate reductase activity3.19E-03
107GO:0016887: ATPase activity3.65E-03
108GO:0051920: peroxiredoxin activity3.84E-03
109GO:0070300: phosphatidic acid binding3.84E-03
110GO:0004559: alpha-mannosidase activity3.84E-03
111GO:0016157: sucrose synthase activity3.84E-03
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.89E-03
113GO:0016621: cinnamoyl-CoA reductase activity4.53E-03
114GO:0015140: malate transmembrane transporter activity4.53E-03
115GO:0016209: antioxidant activity5.26E-03
116GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity5.26E-03
117GO:0004034: aldose 1-epimerase activity5.26E-03
118GO:0004869: cysteine-type endopeptidase inhibitor activity5.26E-03
119GO:0030170: pyridoxal phosphate binding5.50E-03
120GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors6.83E-03
121GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity6.83E-03
122GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity7.67E-03
123GO:0046872: metal ion binding9.52E-03
124GO:0004364: glutathione transferase activity1.01E-02
125GO:0008378: galactosyltransferase activity1.04E-02
126GO:0005388: calcium-transporting ATPase activity1.14E-02
127GO:0004022: alcohol dehydrogenase (NAD) activity1.14E-02
128GO:0015266: protein channel activity1.14E-02
129GO:0031072: heat shock protein binding1.14E-02
130GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.23E-02
131GO:0051287: NAD binding1.28E-02
132GO:0005506: iron ion binding1.54E-02
133GO:0051536: iron-sulfur cluster binding1.56E-02
134GO:0005528: FK506 binding1.56E-02
135GO:0008324: cation transmembrane transporter activity1.68E-02
136GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.75E-02
137GO:0008408: 3'-5' exonuclease activity1.79E-02
138GO:0051082: unfolded protein binding2.04E-02
139GO:0015035: protein disulfide oxidoreductase activity2.10E-02
140GO:0016787: hydrolase activity2.19E-02
141GO:0047134: protein-disulfide reductase activity2.29E-02
142GO:0008080: N-acetyltransferase activity2.55E-02
143GO:0004791: thioredoxin-disulfide reductase activity2.68E-02
144GO:0050662: coenzyme binding2.68E-02
145GO:0010181: FMN binding2.68E-02
146GO:0048038: quinone binding2.96E-02
147GO:0008137: NADH dehydrogenase (ubiquinone) activity2.96E-02
148GO:0004843: thiol-dependent ubiquitin-specific protease activity2.96E-02
149GO:0004518: nuclease activity3.10E-02
150GO:0008483: transaminase activity3.55E-02
151GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.46E-02
152GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.65E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0009507: chloroplast1.02E-10
3GO:0005764: lysosome1.79E-06
4GO:0005773: vacuole1.94E-05
5GO:0009536: plastid5.02E-05
6GO:0005747: mitochondrial respiratory chain complex I6.09E-05
7GO:0043674: columella2.97E-04
8GO:0031932: TORC2 complex2.97E-04
9GO:0009501: amyloplast2.98E-04
10GO:0005777: peroxisome4.41E-04
11GO:0031969: chloroplast membrane8.55E-04
12GO:0016328: lateral plasma membrane1.05E-03
13GO:0031931: TORC1 complex1.05E-03
14GO:0009941: chloroplast envelope1.15E-03
15GO:0005968: Rab-protein geranylgeranyltransferase complex1.51E-03
16GO:0009527: plastid outer membrane2.02E-03
17GO:0031372: UBC13-MMS2 complex2.02E-03
18GO:0009526: plastid envelope2.02E-03
19GO:0005746: mitochondrial respiratory chain2.58E-03
20GO:0005829: cytosol2.80E-03
21GO:0005887: integral component of plasma membrane2.89E-03
22GO:0009535: chloroplast thylakoid membrane3.18E-03
23GO:0031463: Cul3-RING ubiquitin ligase complex3.19E-03
24GO:0009706: chloroplast inner membrane3.62E-03
25GO:0009840: chloroplastic endopeptidase Clp complex3.84E-03
26GO:0031359: integral component of chloroplast outer membrane4.53E-03
27GO:0045273: respiratory chain complex II5.26E-03
28GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)5.26E-03
29GO:0005779: integral component of peroxisomal membrane6.03E-03
30GO:0005759: mitochondrial matrix6.44E-03
31GO:0009570: chloroplast stroma7.25E-03
32GO:0030665: clathrin-coated vesicle membrane7.67E-03
33GO:0005615: extracellular space8.38E-03
34GO:0017119: Golgi transport complex8.55E-03
35GO:0005884: actin filament9.46E-03
36GO:0005750: mitochondrial respiratory chain complex III1.24E-02
37GO:0005758: mitochondrial intermembrane space1.56E-02
38GO:0042651: thylakoid membrane1.68E-02
39GO:0045271: respiratory chain complex I1.68E-02
40GO:0005739: mitochondrion1.69E-02
41GO:0009532: plastid stroma1.79E-02
42GO:0005744: mitochondrial inner membrane presequence translocase complex2.16E-02
43GO:0009534: chloroplast thylakoid2.19E-02
44GO:0005774: vacuolar membrane2.22E-02
45GO:0009505: plant-type cell wall2.32E-02
46GO:0005770: late endosome2.55E-02
47GO:0005623: cell2.62E-02
48GO:0005737: cytoplasm2.95E-02
49GO:0010319: stromule3.55E-02
50GO:0005778: peroxisomal membrane3.55E-02
51GO:0009707: chloroplast outer membrane4.65E-02
<
Gene type



Gene DE type