GO Enrichment Analysis of Co-expressed Genes with
AT4G12990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 2 | GO:2000779: regulation of double-strand break repair | 0.00E+00 |
| 3 | GO:0006720: isoprenoid metabolic process | 0.00E+00 |
| 4 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 5 | GO:0036172: thiamine salvage | 0.00E+00 |
| 6 | GO:0006120: mitochondrial electron transport, NADH to ubiquinone | 1.83E-05 |
| 7 | GO:0006285: base-excision repair, AP site formation | 7.07E-05 |
| 8 | GO:0097502: mannosylation | 7.07E-05 |
| 9 | GO:0016487: farnesol metabolic process | 7.07E-05 |
| 10 | GO:0016122: xanthophyll metabolic process | 1.70E-04 |
| 11 | GO:0030010: establishment of cell polarity | 1.70E-04 |
| 12 | GO:0006501: C-terminal protein lipidation | 1.70E-04 |
| 13 | GO:2000071: regulation of defense response by callose deposition | 1.70E-04 |
| 14 | GO:0006760: folic acid-containing compound metabolic process | 2.86E-04 |
| 15 | GO:0010351: lithium ion transport | 2.86E-04 |
| 16 | GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion | 2.86E-04 |
| 17 | GO:0009647: skotomorphogenesis | 4.15E-04 |
| 18 | GO:0009399: nitrogen fixation | 4.15E-04 |
| 19 | GO:0009963: positive regulation of flavonoid biosynthetic process | 4.15E-04 |
| 20 | GO:0042594: response to starvation | 5.53E-04 |
| 21 | GO:0034613: cellular protein localization | 5.53E-04 |
| 22 | GO:0044804: nucleophagy | 5.53E-04 |
| 23 | GO:0006542: glutamine biosynthetic process | 5.53E-04 |
| 24 | GO:0070534: protein K63-linked ubiquitination | 5.53E-04 |
| 25 | GO:0009649: entrainment of circadian clock | 5.53E-04 |
| 26 | GO:0000422: mitophagy | 7.00E-04 |
| 27 | GO:0098719: sodium ion import across plasma membrane | 7.00E-04 |
| 28 | GO:0010117: photoprotection | 7.00E-04 |
| 29 | GO:0046283: anthocyanin-containing compound metabolic process | 7.00E-04 |
| 30 | GO:0009229: thiamine diphosphate biosynthetic process | 7.00E-04 |
| 31 | GO:0000045: autophagosome assembly | 8.57E-04 |
| 32 | GO:0006301: postreplication repair | 8.57E-04 |
| 33 | GO:0009228: thiamine biosynthetic process | 8.57E-04 |
| 34 | GO:0035556: intracellular signal transduction | 8.64E-04 |
| 35 | GO:0048527: lateral root development | 1.05E-03 |
| 36 | GO:0009853: photorespiration | 1.15E-03 |
| 37 | GO:0009396: folic acid-containing compound biosynthetic process | 1.19E-03 |
| 38 | GO:0000028: ribosomal small subunit assembly | 1.37E-03 |
| 39 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.37E-03 |
| 40 | GO:0009880: embryonic pattern specification | 1.56E-03 |
| 41 | GO:0098656: anion transmembrane transport | 1.76E-03 |
| 42 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.97E-03 |
| 43 | GO:0051453: regulation of intracellular pH | 1.97E-03 |
| 44 | GO:0035999: tetrahydrofolate interconversion | 1.97E-03 |
| 45 | GO:0009688: abscisic acid biosynthetic process | 2.19E-03 |
| 46 | GO:0009641: shade avoidance | 2.19E-03 |
| 47 | GO:0006995: cellular response to nitrogen starvation | 2.19E-03 |
| 48 | GO:0010015: root morphogenesis | 2.41E-03 |
| 49 | GO:0009682: induced systemic resistance | 2.41E-03 |
| 50 | GO:0008152: metabolic process | 2.44E-03 |
| 51 | GO:0006829: zinc II ion transport | 2.88E-03 |
| 52 | GO:0048440: carpel development | 3.12E-03 |
| 53 | GO:0002237: response to molecule of bacterial origin | 3.12E-03 |
| 54 | GO:0000162: tryptophan biosynthetic process | 3.63E-03 |
| 55 | GO:2000377: regulation of reactive oxygen species metabolic process | 3.89E-03 |
| 56 | GO:0006338: chromatin remodeling | 3.89E-03 |
| 57 | GO:0010431: seed maturation | 4.44E-03 |
| 58 | GO:0061077: chaperone-mediated protein folding | 4.44E-03 |
| 59 | GO:0016226: iron-sulfur cluster assembly | 4.73E-03 |
| 60 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 4.73E-03 |
| 61 | GO:0010150: leaf senescence | 4.76E-03 |
| 62 | GO:0006284: base-excision repair | 5.32E-03 |
| 63 | GO:0010118: stomatal movement | 5.93E-03 |
| 64 | GO:0006814: sodium ion transport | 6.56E-03 |
| 65 | GO:0008654: phospholipid biosynthetic process | 6.89E-03 |
| 66 | GO:0002229: defense response to oomycetes | 7.22E-03 |
| 67 | GO:0006914: autophagy | 8.25E-03 |
| 68 | GO:0071805: potassium ion transmembrane transport | 8.61E-03 |
| 69 | GO:0042128: nitrate assimilation | 1.01E-02 |
| 70 | GO:0006906: vesicle fusion | 1.01E-02 |
| 71 | GO:0048573: photoperiodism, flowering | 1.05E-02 |
| 72 | GO:0010119: regulation of stomatal movement | 1.25E-02 |
| 73 | GO:0010043: response to zinc ion | 1.25E-02 |
| 74 | GO:0009867: jasmonic acid mediated signaling pathway | 1.33E-02 |
| 75 | GO:0009651: response to salt stress | 1.44E-02 |
| 76 | GO:0030001: metal ion transport | 1.46E-02 |
| 77 | GO:0006887: exocytosis | 1.50E-02 |
| 78 | GO:0009640: photomorphogenesis | 1.59E-02 |
| 79 | GO:0031347: regulation of defense response | 1.82E-02 |
| 80 | GO:0009736: cytokinin-activated signaling pathway | 1.97E-02 |
| 81 | GO:0006486: protein glycosylation | 1.97E-02 |
| 82 | GO:0009585: red, far-red light phototransduction | 1.97E-02 |
| 83 | GO:0010224: response to UV-B | 2.01E-02 |
| 84 | GO:0009738: abscisic acid-activated signaling pathway | 2.32E-02 |
| 85 | GO:0009620: response to fungus | 2.37E-02 |
| 86 | GO:0018105: peptidyl-serine phosphorylation | 2.58E-02 |
| 87 | GO:0009737: response to abscisic acid | 2.83E-02 |
| 88 | GO:0055085: transmembrane transport | 3.05E-02 |
| 89 | GO:0009058: biosynthetic process | 3.08E-02 |
| 90 | GO:0006457: protein folding | 3.11E-02 |
| 91 | GO:0009790: embryo development | 3.31E-02 |
| 92 | GO:0010468: regulation of gene expression | 4.23E-02 |
| 93 | GO:0006468: protein phosphorylation | 4.89E-02 |
| 94 | GO:0009826: unidimensional cell growth | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity | 0.00E+00 |
| 2 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 3 | GO:0004417: hydroxyethylthiazole kinase activity | 0.00E+00 |
| 4 | GO:0052670: geraniol kinase activity | 0.00E+00 |
| 5 | GO:0052668: farnesol kinase activity | 0.00E+00 |
| 6 | GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity | 0.00E+00 |
| 7 | GO:0000033: alpha-1,3-mannosyltransferase activity | 0.00E+00 |
| 8 | GO:0052671: geranylgeraniol kinase activity | 0.00E+00 |
| 9 | GO:0019707: protein-cysteine S-acyltransferase activity | 7.07E-05 |
| 10 | GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity | 7.07E-05 |
| 11 | GO:0016776: phosphotransferase activity, phosphate group as acceptor | 7.07E-05 |
| 12 | GO:0004048: anthranilate phosphoribosyltransferase activity | 7.07E-05 |
| 13 | GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity | 7.07E-05 |
| 14 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 4.99E-04 |
| 15 | GO:0019776: Atg8 ligase activity | 5.53E-04 |
| 16 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 5.53E-04 |
| 17 | GO:0019104: DNA N-glycosylase activity | 5.53E-04 |
| 18 | GO:0005496: steroid binding | 7.00E-04 |
| 19 | GO:0004356: glutamate-ammonia ligase activity | 7.00E-04 |
| 20 | GO:0015081: sodium ion transmembrane transporter activity | 8.57E-04 |
| 21 | GO:0004605: phosphatidate cytidylyltransferase activity | 8.57E-04 |
| 22 | GO:0070300: phosphatidic acid binding | 1.02E-03 |
| 23 | GO:0008143: poly(A) binding | 1.19E-03 |
| 24 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.58E-03 |
| 25 | GO:0015386: potassium:proton antiporter activity | 2.41E-03 |
| 26 | GO:0003824: catalytic activity | 2.65E-03 |
| 27 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.88E-03 |
| 28 | GO:0005528: FK506 binding | 3.89E-03 |
| 29 | GO:0004672: protein kinase activity | 4.12E-03 |
| 30 | GO:0008514: organic anion transmembrane transporter activity | 5.32E-03 |
| 31 | GO:0046873: metal ion transmembrane transporter activity | 6.24E-03 |
| 32 | GO:0048038: quinone binding | 7.22E-03 |
| 33 | GO:0015385: sodium:proton antiporter activity | 7.90E-03 |
| 34 | GO:0016597: amino acid binding | 8.97E-03 |
| 35 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 1.01E-02 |
| 36 | GO:0004683: calmodulin-dependent protein kinase activity | 1.05E-02 |
| 37 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.21E-02 |
| 38 | GO:0000149: SNARE binding | 1.41E-02 |
| 39 | GO:0042393: histone binding | 1.46E-02 |
| 40 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.46E-02 |
| 41 | GO:0005484: SNAP receptor activity | 1.59E-02 |
| 42 | GO:0043621: protein self-association | 1.68E-02 |
| 43 | GO:0005198: structural molecule activity | 1.73E-02 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.77E-02 |
| 45 | GO:0016887: ATPase activity | 2.10E-02 |
| 46 | GO:0031625: ubiquitin protein ligase binding | 2.11E-02 |
| 47 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.26E-02 |
| 48 | GO:0051082: unfolded protein binding | 2.53E-02 |
| 49 | GO:0004674: protein serine/threonine kinase activity | 2.55E-02 |
| 50 | GO:0004386: helicase activity | 2.69E-02 |
| 51 | GO:0016787: hydrolase activity | 2.85E-02 |
| 52 | GO:0015144: carbohydrate transmembrane transporter activity | 3.37E-02 |
| 53 | GO:0005351: sugar:proton symporter activity | 3.67E-02 |
| 54 | GO:0042802: identical protein binding | 4.42E-02 |
| 55 | GO:0008168: methyltransferase activity | 4.95E-02 |
| 56 | GO:0003723: RNA binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000152: nuclear ubiquitin ligase complex | 7.07E-05 |
| 2 | GO:0034274: Atg12-Atg5-Atg16 complex | 1.70E-04 |
| 3 | GO:0005747: mitochondrial respiratory chain complex I | 2.39E-04 |
| 4 | GO:0031372: UBC13-MMS2 complex | 5.53E-04 |
| 5 | GO:0009517: PSII associated light-harvesting complex II | 5.53E-04 |
| 6 | GO:0031969: chloroplast membrane | 1.32E-03 |
| 7 | GO:0034045: pre-autophagosomal structure membrane | 1.56E-03 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.76E-03 |
| 9 | GO:0005763: mitochondrial small ribosomal subunit | 1.76E-03 |
| 10 | GO:0042644: chloroplast nucleoid | 1.76E-03 |
| 11 | GO:0031901: early endosome membrane | 1.76E-03 |
| 12 | GO:0016604: nuclear body | 1.97E-03 |
| 13 | GO:0016607: nuclear speck | 2.39E-03 |
| 14 | GO:0045271: respiratory chain complex I | 4.17E-03 |
| 15 | GO:0032580: Golgi cisterna membrane | 8.25E-03 |
| 16 | GO:0005829: cytosol | 1.04E-02 |
| 17 | GO:0005643: nuclear pore | 1.13E-02 |
| 18 | GO:0009570: chloroplast stroma | 1.25E-02 |
| 19 | GO:0009507: chloroplast | 1.46E-02 |
| 20 | GO:0031201: SNARE complex | 1.50E-02 |
| 21 | GO:0005737: cytoplasm | 1.80E-02 |
| 22 | GO:0005789: endoplasmic reticulum membrane | 1.87E-02 |
| 23 | GO:0031966: mitochondrial membrane | 1.87E-02 |
| 24 | GO:0010008: endosome membrane | 2.26E-02 |
| 25 | GO:0012505: endomembrane system | 2.47E-02 |
| 26 | GO:0005759: mitochondrial matrix | 3.49E-02 |