co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0006114: glycerol biosynthetic process	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0015979: photosynthesis	1.59E-05
8	GO:0042549: photosystem II stabilization	9.94E-05
9	GO:0010493: Lewis a epitope biosynthetic process	2.48E-04
10	GO:0048507: meristem development	3.41E-04
11	GO:0010205: photoinhibition	4.05E-04
12	GO:0006949: syncytium formation	4.74E-04
13	GO:0019684: photosynthesis, light reaction	5.47E-04
14	GO:0035304: regulation of protein dephosphorylation	5.49E-04
15	GO:0006741: NADP biosynthetic process	5.49E-04
16	GO:0080181: lateral root branching	5.49E-04
17	GO:2000012: regulation of auxin polar transport	7.09E-04
18	GO:0010207: photosystem II assembly	7.98E-04
19	GO:0009405: pathogenesis	8.92E-04
20	GO:0006954: inflammatory response	8.92E-04
21	GO:0005977: glycogen metabolic process	8.92E-04
22	GO:0019674: NAD metabolic process	8.92E-04
23	GO:0005992: trehalose biosynthetic process	1.09E-03
24	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.27E-03
25	GO:0009650: UV protection	1.27E-03
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.27E-03
27	GO:0019363: pyridine nucleotide biosynthetic process	1.27E-03
28	GO:0010239: chloroplast mRNA processing	1.27E-03
29	GO:0009664: plant-type cell wall organization	1.52E-03
30	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.57E-03
31	GO:0010021: amylopectin biosynthetic process	1.70E-03
32	GO:0009765: photosynthesis, light harvesting	1.70E-03
33	GO:0022622: root system development	1.70E-03
34	GO:0016558: protein import into peroxisome matrix	2.17E-03
35	GO:0006564: L-serine biosynthetic process	2.17E-03
36	GO:0010190: cytochrome b6f complex assembly	2.67E-03
37	GO:0003006: developmental process involved in reproduction	2.67E-03
38	GO:0032502: developmental process	2.82E-03
39	GO:0009828: plant-type cell wall loosening	3.20E-03
40	GO:1901259: chloroplast rRNA processing	3.21E-03
41	GO:0010189: vitamin E biosynthetic process	3.21E-03
42	GO:0009769: photosynthesis, light harvesting in photosystem II	3.79E-03
43	GO:0009645: response to low light intensity stimulus	3.79E-03
44	GO:0032880: regulation of protein localization	3.79E-03
45	GO:0009627: systemic acquired resistance	4.26E-03
46	GO:0070413: trehalose metabolism in response to stress	4.39E-03
47	GO:0030091: protein repair	4.39E-03
48	GO:0006605: protein targeting	4.39E-03
49	GO:0010492: maintenance of shoot apical meristem identity	4.39E-03
50	GO:0048564: photosystem I assembly	4.39E-03
51	GO:0015995: chlorophyll biosynthetic process	4.49E-03
52	GO:0016311: dephosphorylation	4.72E-03
53	GO:0009827: plant-type cell wall modification	5.03E-03
54	GO:0048589: developmental growth	5.70E-03
55	GO:0006098: pentose-phosphate shunt	5.70E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	7.88E-03
57	GO:0009089: lysine biosynthetic process via diaminopimelate	7.88E-03
58	GO:1903507: negative regulation of nucleic acid-templated transcription	7.88E-03
59	GO:0009750: response to fructose	7.88E-03
60	GO:0006913: nucleocytoplasmic transport	7.88E-03
61	GO:0005983: starch catabolic process	8.66E-03
62	GO:0010582: floral meristem determinacy	8.66E-03
63	GO:0010152: pollen maturation	8.66E-03
64	GO:0009826: unidimensional cell growth	8.66E-03
65	GO:0010628: positive regulation of gene expression	9.47E-03
66	GO:0018107: peptidyl-threonine phosphorylation	9.47E-03
67	GO:0006094: gluconeogenesis	9.47E-03
68	GO:0006302: double-strand break repair	1.03E-02
69	GO:0048467: gynoecium development	1.03E-02
70	GO:0019853: L-ascorbic acid biosynthetic process	1.12E-02
71	GO:0010030: positive regulation of seed germination	1.12E-02
72	GO:0080167: response to karrikin	1.20E-02
73	GO:0006863: purine nucleobase transport	1.21E-02
74	GO:0006833: water transport	1.21E-02
75	GO:0080147: root hair cell development	1.30E-02
76	GO:0007017: microtubule-based process	1.39E-02
77	GO:0009768: photosynthesis, light harvesting in photosystem I	1.39E-02
78	GO:0009740: gibberellic acid mediated signaling pathway	1.47E-02
79	GO:0051321: meiotic cell cycle	1.49E-02
80	GO:0048511: rhythmic process	1.49E-02
81	GO:0009269: response to desiccation	1.49E-02
82	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.59E-02
83	GO:0009742: brassinosteroid mediated signaling pathway	1.66E-02
84	GO:0009411: response to UV	1.69E-02
85	GO:0071369: cellular response to ethylene stimulus	1.69E-02
86	GO:0006012: galactose metabolic process	1.69E-02
87	GO:0006284: base-excision repair	1.79E-02
88	GO:0009306: protein secretion	1.79E-02
89	GO:0048443: stamen development	1.79E-02
90	GO:0008284: positive regulation of cell proliferation	1.90E-02
91	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.90E-02
92	GO:0006810: transport	1.94E-02
93	GO:0034220: ion transmembrane transport	2.01E-02
94	GO:0042631: cellular response to water deprivation	2.01E-02
95	GO:0005975: carbohydrate metabolic process	2.05E-02
96	GO:0009958: positive gravitropism	2.12E-02
97	GO:0006520: cellular amino acid metabolic process	2.12E-02
98	GO:0048868: pollen tube development	2.12E-02
99	GO:0046323: glucose import	2.12E-02
100	GO:0009741: response to brassinosteroid	2.12E-02
101	GO:0006814: sodium ion transport	2.23E-02
102	GO:0042752: regulation of circadian rhythm	2.23E-02
103	GO:0009749: response to glucose	2.34E-02
104	GO:0019252: starch biosynthetic process	2.34E-02
105	GO:0008654: phospholipid biosynthetic process	2.34E-02
106	GO:0010193: response to ozone	2.46E-02
107	GO:0006635: fatty acid beta-oxidation	2.46E-02
108	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.46E-02
109	GO:0016032: viral process	2.58E-02
110	GO:0040008: regulation of growth	2.59E-02
111	GO:0009451: RNA modification	2.78E-02
112	GO:0007166: cell surface receptor signaling pathway	3.10E-02
113	GO:0001666: response to hypoxia	3.19E-02
114	GO:0010027: thylakoid membrane organization	3.19E-02
115	GO:0010411: xyloglucan metabolic process	3.59E-02
116	GO:0048573: photoperiodism, flowering	3.59E-02
117	GO:0009817: defense response to fungus, incompatible interaction	3.86E-02
118	GO:0018298: protein-chromophore linkage	3.86E-02
119	GO:0009416: response to light stimulus	4.00E-02
120	GO:0006811: ion transport	4.14E-02
121	GO:0010218: response to far red light	4.14E-02
122	GO:0048527: lateral root development	4.28E-02
123	GO:0016310: phosphorylation	4.55E-02
124	GO:0009637: response to blue light	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0042623: ATPase activity, coupled	0.00E+00
2	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
6	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
9	GO:0010242: oxygen evolving activity	2.48E-04
10	GO:0019203: carbohydrate phosphatase activity	2.48E-04
11	GO:0042736: NADH kinase activity	2.48E-04
12	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.48E-04
13	GO:0050308: sugar-phosphatase activity	2.48E-04
14	GO:0004805: trehalose-phosphatase activity	4.74E-04
15	GO:0016630: protochlorophyllide reductase activity	5.49E-04
16	GO:0019156: isoamylase activity	5.49E-04
17	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.49E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	5.49E-04
19	GO:0090729: toxin activity	8.92E-04
20	GO:0008508: bile acid:sodium symporter activity	1.27E-03
21	GO:0005354: galactose transmembrane transporter activity	1.27E-03
22	GO:0010011: auxin binding	1.70E-03
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.70E-03
24	GO:0080032: methyl jasmonate esterase activity	1.70E-03
25	GO:0003959: NADPH dehydrogenase activity	2.17E-03
26	GO:0008725: DNA-3-methyladenine glycosylase activity	2.17E-03
27	GO:0000293: ferric-chelate reductase activity	2.67E-03
28	GO:0042578: phosphoric ester hydrolase activity	2.67E-03
29	GO:0004556: alpha-amylase activity	2.67E-03
30	GO:0004462: lactoylglutathione lyase activity	2.67E-03
31	GO:2001070: starch binding	2.67E-03
32	GO:0004605: phosphatidate cytidylyltransferase activity	2.67E-03
33	GO:0080030: methyl indole-3-acetate esterase activity	2.67E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	2.67E-03
35	GO:0008195: phosphatidate phosphatase activity	3.21E-03
36	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.21E-03
37	GO:0004033: aldo-keto reductase (NADP) activity	4.39E-03
38	GO:0003951: NAD+ kinase activity	5.03E-03
39	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.70E-03
40	GO:0008417: fucosyltransferase activity	5.70E-03
41	GO:0030145: manganese ion binding	5.75E-03
42	GO:0003993: acid phosphatase activity	6.59E-03
43	GO:0015020: glucuronosyltransferase activity	7.12E-03
44	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.88E-03
45	GO:0004521: endoribonuclease activity	8.66E-03
46	GO:0016788: hydrolase activity, acting on ester bonds	9.31E-03
47	GO:0008081: phosphoric diester hydrolase activity	9.47E-03
48	GO:0008266: poly(U) RNA binding	1.03E-02
49	GO:0008083: growth factor activity	1.03E-02
50	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.03E-02
51	GO:0031409: pigment binding	1.21E-02
52	GO:0003714: transcription corepressor activity	1.30E-02
53	GO:0005345: purine nucleobase transmembrane transporter activity	1.39E-02
54	GO:0008408: 3'-5' exonuclease activity	1.49E-02
55	GO:0016491: oxidoreductase activity	1.61E-02
56	GO:0030570: pectate lyase activity	1.69E-02
57	GO:0003727: single-stranded RNA binding	1.79E-02
58	GO:0004519: endonuclease activity	2.18E-02
59	GO:0005355: glucose transmembrane transporter activity	2.23E-02
60	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.46E-02
61	GO:0048038: quinone binding	2.46E-02
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.53E-02
63	GO:0016791: phosphatase activity	2.82E-02
64	GO:0016597: amino acid binding	3.07E-02
65	GO:0015250: water channel activity	3.19E-02
66	GO:0016168: chlorophyll binding	3.32E-02
67	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.59E-02
68	GO:0003824: catalytic activity	3.65E-02
69	GO:0008236: serine-type peptidase activity	3.72E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.86E-02
71	GO:0005096: GTPase activator activity	4.00E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	2.13E-08
4	GO:0009507: chloroplast	1.56E-07
5	GO:0030095: chloroplast photosystem II	1.01E-06
6	GO:0009538: photosystem I reaction center	4.92E-06
7	GO:0009579: thylakoid	4.98E-05
8	GO:0009543: chloroplast thylakoid lumen	7.91E-05
9	GO:0009654: photosystem II oxygen evolving complex	8.50E-05
10	GO:0019898: extrinsic component of membrane	2.47E-04
11	GO:0000791: euchromatin	2.48E-04
12	GO:0009534: chloroplast thylakoid	2.68E-04
13	GO:0010287: plastoglobule	5.44E-04
14	GO:0030870: Mre11 complex	5.49E-04
15	GO:0009531: secondary cell wall	1.27E-03
16	GO:0009517: PSII associated light-harvesting complex II	1.70E-03
17	GO:0030286: dynein complex	1.70E-03
18	GO:0000795: synaptonemal complex	2.17E-03
19	GO:0009523: photosystem II	2.47E-03
20	GO:0009533: chloroplast stromal thylakoid	3.79E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.70E-03
22	GO:0055028: cortical microtubule	7.12E-03
23	GO:0031977: thylakoid lumen	7.49E-03
24	GO:0090404: pollen tube tip	7.88E-03
25	GO:0009570: chloroplast stroma	8.73E-03
26	GO:0009941: chloroplast envelope	9.74E-03
27	GO:0030076: light-harvesting complex	1.12E-02
28	GO:0031969: chloroplast membrane	1.20E-02
29	GO:0009522: photosystem I	2.23E-02
30	GO:0016020: membrane	2.54E-02
31	GO:0000785: chromatin	2.58E-02
32	GO:0032580: Golgi cisterna membrane	2.82E-02
33	GO:0005778: peroxisomal membrane	2.94E-02
34	GO:0005576: extracellular region	4.20E-02