co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0048507: meristem development	2.37E-06
7	GO:0010158: abaxial cell fate specification	2.54E-05
8	GO:0010450: inflorescence meristem growth	1.37E-04
9	GO:0010582: floral meristem determinacy	2.75E-04
10	GO:0010628: positive regulation of gene expression	3.14E-04
11	GO:0009826: unidimensional cell growth	4.96E-04
12	GO:0006954: inflammatory response	5.20E-04
13	GO:0005977: glycogen metabolic process	5.20E-04
14	GO:0045165: cell fate commitment	5.20E-04
15	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.44E-04
16	GO:0009650: UV protection	7.44E-04
17	GO:0050482: arachidonic acid secretion	7.44E-04
18	GO:0010239: chloroplast mRNA processing	7.44E-04
19	GO:0006552: leucine catabolic process	9.85E-04
20	GO:0010021: amylopectin biosynthetic process	9.85E-04
21	GO:0022622: root system development	9.85E-04
22	GO:0032502: developmental process	1.25E-03
23	GO:1902183: regulation of shoot apical meristem development	1.25E-03
24	GO:1902456: regulation of stomatal opening	1.53E-03
25	GO:0003006: developmental process involved in reproduction	1.53E-03
26	GO:0006596: polyamine biosynthetic process	1.53E-03
27	GO:0048759: xylem vessel member cell differentiation	1.53E-03
28	GO:0045490: pectin catabolic process	1.81E-03
29	GO:1901259: chloroplast rRNA processing	1.83E-03
30	GO:0009942: longitudinal axis specification	1.83E-03
31	GO:0022904: respiratory electron transport chain	2.15E-03
32	GO:0032880: regulation of protein localization	2.15E-03
33	GO:0010050: vegetative phase change	2.15E-03
34	GO:0006353: DNA-templated transcription, termination	2.49E-03
35	GO:0070413: trehalose metabolism in response to stress	2.49E-03
36	GO:0009850: auxin metabolic process	2.49E-03
37	GO:0006605: protein targeting	2.49E-03
38	GO:0010492: maintenance of shoot apical meristem identity	2.49E-03
39	GO:0006644: phospholipid metabolic process	2.49E-03
40	GO:0009061: anaerobic respiration	2.49E-03
41	GO:0007389: pattern specification process	2.85E-03
42	GO:0010093: specification of floral organ identity	2.85E-03
43	GO:0009827: plant-type cell wall modification	2.85E-03
44	GO:2000024: regulation of leaf development	3.22E-03
45	GO:0048589: developmental growth	3.22E-03
46	GO:0006098: pentose-phosphate shunt	3.22E-03
47	GO:0009640: photomorphogenesis	3.54E-03
48	GO:0009926: auxin polar transport	3.54E-03
49	GO:0009299: mRNA transcription	4.00E-03
50	GO:0048829: root cap development	4.00E-03
51	GO:0006949: syncytium formation	4.00E-03
52	GO:0009773: photosynthetic electron transport in photosystem I	4.42E-03
53	GO:1903507: negative regulation of nucleic acid-templated transcription	4.42E-03
54	GO:0009664: plant-type cell wall organization	4.43E-03
55	GO:0005975: carbohydrate metabolic process	4.78E-03
56	GO:0010152: pollen maturation	4.85E-03
57	GO:0018107: peptidyl-threonine phosphorylation	5.30E-03
58	GO:0009725: response to hormone	5.30E-03
59	GO:0006094: gluconeogenesis	5.30E-03
60	GO:2000012: regulation of auxin polar transport	5.30E-03
61	GO:0009933: meristem structural organization	5.76E-03
62	GO:0010207: photosystem II assembly	5.76E-03
63	GO:0048467: gynoecium development	5.76E-03
64	GO:0019853: L-ascorbic acid biosynthetic process	6.23E-03
65	GO:0010030: positive regulation of seed germination	6.23E-03
66	GO:0009740: gibberellic acid mediated signaling pathway	6.36E-03
67	GO:0009742: brassinosteroid mediated signaling pathway	7.16E-03
68	GO:0009944: polarity specification of adaxial/abaxial axis	7.22E-03
69	GO:0005992: trehalose biosynthetic process	7.22E-03
70	GO:0006874: cellular calcium ion homeostasis	7.73E-03
71	GO:0003333: amino acid transmembrane transport	8.26E-03
72	GO:0048511: rhythmic process	8.26E-03
73	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.79E-03
74	GO:0009411: response to UV	9.35E-03
75	GO:0001944: vasculature development	9.35E-03
76	GO:0006012: galactose metabolic process	9.35E-03
77	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.35E-03
78	GO:0006284: base-excision repair	9.92E-03
79	GO:0009306: protein secretion	9.92E-03
80	GO:0048443: stamen development	9.92E-03
81	GO:0009734: auxin-activated signaling pathway	1.04E-02
82	GO:0008284: positive regulation of cell proliferation	1.05E-02
83	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.05E-02
84	GO:0010087: phloem or xylem histogenesis	1.11E-02
85	GO:0042631: cellular response to water deprivation	1.11E-02
86	GO:0040008: regulation of growth	1.12E-02
87	GO:0010154: fruit development	1.17E-02
88	GO:0010305: leaf vascular tissue pattern formation	1.17E-02
89	GO:0009958: positive gravitropism	1.17E-02
90	GO:0046323: glucose import	1.17E-02
91	GO:0009741: response to brassinosteroid	1.17E-02
92	GO:0042752: regulation of circadian rhythm	1.23E-02
93	GO:0009646: response to absence of light	1.23E-02
94	GO:0019252: starch biosynthetic process	1.29E-02
95	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.36E-02
96	GO:0009416: response to light stimulus	1.40E-02
97	GO:0010583: response to cyclopentenone	1.42E-02
98	GO:0010252: auxin homeostasis	1.55E-02
99	GO:0009828: plant-type cell wall loosening	1.55E-02
100	GO:0009567: double fertilization forming a zygote and endosperm	1.55E-02
101	GO:0001666: response to hypoxia	1.76E-02
102	GO:0010027: thylakoid membrane organization	1.76E-02
103	GO:0009627: systemic acquired resistance	1.90E-02
104	GO:0048573: photoperiodism, flowering	1.98E-02
105	GO:0006950: response to stress	1.98E-02
106	GO:0016311: dephosphorylation	2.05E-02
107	GO:0006355: regulation of transcription, DNA-templated	2.31E-02
108	GO:0048527: lateral root development	2.36E-02
109	GO:0009910: negative regulation of flower development	2.36E-02
110	GO:0006865: amino acid transport	2.43E-02
111	GO:0044550: secondary metabolite biosynthetic process	2.45E-02
112	GO:0006351: transcription, DNA-templated	2.58E-02
113	GO:0007165: signal transduction	2.72E-02
114	GO:0045892: negative regulation of transcription, DNA-templated	2.74E-02
115	GO:0006631: fatty acid metabolic process	2.84E-02
116	GO:0051707: response to other organism	3.01E-02
117	GO:0016042: lipid catabolic process	3.23E-02
118	GO:0006281: DNA repair	3.32E-02
119	GO:0031347: regulation of defense response	3.45E-02
120	GO:0048364: root development	3.47E-02
121	GO:0051603: proteolysis involved in cellular protein catabolic process	3.82E-02
122	GO:0009733: response to auxin	3.91E-02
123	GO:0009909: regulation of flower development	4.00E-02
124	GO:0006096: glycolytic process	4.19E-02
125	GO:0018105: peptidyl-serine phosphorylation	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0010487: thermospermine synthase activity	0.00E+00
2	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
3	GO:0048039: ubiquinone binding	0.00E+00
4	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0030570: pectate lyase activity	3.65E-05
7	GO:0016768: spermine synthase activity	1.37E-04
8	GO:0019156: isoamylase activity	3.16E-04
9	GO:0016868: intramolecular transferase activity, phosphotransferases	3.16E-04
10	GO:0043425: bHLH transcription factor binding	3.16E-04
11	GO:0016805: dipeptidase activity	5.20E-04
12	GO:0004180: carboxypeptidase activity	5.20E-04
13	GO:0005354: galactose transmembrane transporter activity	7.44E-04
14	GO:0010011: auxin binding	9.85E-04
15	GO:0010328: auxin influx transmembrane transporter activity	9.85E-04
16	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.25E-03
17	GO:0004623: phospholipase A2 activity	1.25E-03
18	GO:0008725: DNA-3-methyladenine glycosylase activity	1.25E-03
19	GO:0016829: lyase activity	1.33E-03
20	GO:0042578: phosphoric ester hydrolase activity	1.53E-03
21	GO:0004556: alpha-amylase activity	1.53E-03
22	GO:0004462: lactoylglutathione lyase activity	1.53E-03
23	GO:0004332: fructose-bisphosphate aldolase activity	1.53E-03
24	GO:0004033: aldo-keto reductase (NADP) activity	2.49E-03
25	GO:0003993: acid phosphatase activity	2.87E-03
26	GO:0009672: auxin:proton symporter activity	3.60E-03
27	GO:0004805: trehalose-phosphatase activity	4.00E-03
28	GO:0015020: glucuronosyltransferase activity	4.00E-03
29	GO:0004521: endoribonuclease activity	4.85E-03
30	GO:0010329: auxin efflux transmembrane transporter activity	5.30E-03
31	GO:0008083: growth factor activity	5.76E-03
32	GO:0005217: intracellular ligand-gated ion channel activity	6.23E-03
33	GO:0004970: ionotropic glutamate receptor activity	6.23E-03
34	GO:0016874: ligase activity	6.36E-03
35	GO:0003714: transcription corepressor activity	7.22E-03
36	GO:0003727: single-stranded RNA binding	9.92E-03
37	GO:0003824: catalytic activity	1.05E-02
38	GO:0008536: Ran GTPase binding	1.17E-02
39	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.18E-02
40	GO:0005355: glucose transmembrane transporter activity	1.23E-02
41	GO:0016791: phosphatase activity	1.55E-02
42	GO:0046872: metal ion binding	1.62E-02
43	GO:0008236: serine-type peptidase activity	2.05E-02
44	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.12E-02
45	GO:0005096: GTPase activator activity	2.20E-02
46	GO:0051539: 4 iron, 4 sulfur cluster binding	2.76E-02
47	GO:0004871: signal transducer activity	2.83E-02
48	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.91E-02
49	GO:0004185: serine-type carboxypeptidase activity	3.01E-02
50	GO:0043621: protein self-association	3.19E-02
51	GO:0015293: symporter activity	3.27E-02
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.36E-02
53	GO:0015171: amino acid transmembrane transporter activity	4.00E-02
54	GO:0031625: ubiquitin protein ligase binding	4.00E-02
55	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.49E-02
56	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.49E-02
57	GO:0046983: protein dimerization activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0009531: secondary cell wall	7.44E-04
5	GO:0031305: integral component of mitochondrial inner membrane	2.49E-03
6	GO:0005740: mitochondrial envelope	4.00E-03
7	GO:0031410: cytoplasmic vesicle	8.79E-03
8	GO:0005773: vacuole	1.49E-02
9	GO:0000151: ubiquitin ligase complex	2.12E-02
10	GO:0005576: extracellular region	2.31E-02
11	GO:0009505: plant-type cell wall	4.48E-02