GO Enrichment Analysis of Co-expressed Genes with
AT4G12830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 2 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 3 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0010966: regulation of phosphate transport | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 8 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.93E-08 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 2.42E-07 |
| 10 | GO:0018026: peptidyl-lysine monomethylation | 2.14E-06 |
| 11 | GO:0010027: thylakoid membrane organization | 2.21E-05 |
| 12 | GO:0006021: inositol biosynthetic process | 3.29E-05 |
| 13 | GO:0010021: amylopectin biosynthetic process | 3.29E-05 |
| 14 | GO:0061077: chaperone-mediated protein folding | 7.11E-05 |
| 15 | GO:0015979: photosynthesis | 7.34E-05 |
| 16 | GO:0046855: inositol phosphate dephosphorylation | 7.77E-05 |
| 17 | GO:0042549: photosystem II stabilization | 7.77E-05 |
| 18 | GO:0006438: valyl-tRNA aminoacylation | 2.13E-04 |
| 19 | GO:0043953: protein transport by the Tat complex | 2.13E-04 |
| 20 | GO:0000476: maturation of 4.5S rRNA | 2.13E-04 |
| 21 | GO:0000967: rRNA 5'-end processing | 2.13E-04 |
| 22 | GO:0000481: maturation of 5S rRNA | 2.13E-04 |
| 23 | GO:0065002: intracellular protein transmembrane transport | 2.13E-04 |
| 24 | GO:0043686: co-translational protein modification | 2.13E-04 |
| 25 | GO:0046167: glycerol-3-phosphate biosynthetic process | 2.13E-04 |
| 26 | GO:0043007: maintenance of rDNA | 2.13E-04 |
| 27 | GO:0034337: RNA folding | 2.13E-04 |
| 28 | GO:0006419: alanyl-tRNA aminoacylation | 2.13E-04 |
| 29 | GO:0019684: photosynthesis, light reaction | 4.43E-04 |
| 30 | GO:0006650: glycerophospholipid metabolic process | 4.76E-04 |
| 31 | GO:0035304: regulation of protein dephosphorylation | 4.76E-04 |
| 32 | GO:0080181: lateral root branching | 4.76E-04 |
| 33 | GO:0034470: ncRNA processing | 4.76E-04 |
| 34 | GO:0006790: sulfur compound metabolic process | 5.07E-04 |
| 35 | GO:0010207: photosystem II assembly | 6.47E-04 |
| 36 | GO:0019853: L-ascorbic acid biosynthetic process | 7.24E-04 |
| 37 | GO:0046854: phosphatidylinositol phosphorylation | 7.24E-04 |
| 38 | GO:0046168: glycerol-3-phosphate catabolic process | 7.74E-04 |
| 39 | GO:0009405: pathogenesis | 7.74E-04 |
| 40 | GO:0006954: inflammatory response | 7.74E-04 |
| 41 | GO:0005977: glycogen metabolic process | 7.74E-04 |
| 42 | GO:0019915: lipid storage | 1.07E-03 |
| 43 | GO:0006072: glycerol-3-phosphate metabolic process | 1.10E-03 |
| 44 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.10E-03 |
| 45 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.10E-03 |
| 46 | GO:2001141: regulation of RNA biosynthetic process | 1.10E-03 |
| 47 | GO:0006020: inositol metabolic process | 1.10E-03 |
| 48 | GO:0006810: transport | 1.24E-03 |
| 49 | GO:0015994: chlorophyll metabolic process | 1.47E-03 |
| 50 | GO:0022622: root system development | 1.47E-03 |
| 51 | GO:0006552: leucine catabolic process | 1.47E-03 |
| 52 | GO:0015976: carbon utilization | 1.47E-03 |
| 53 | GO:0006564: L-serine biosynthetic process | 1.87E-03 |
| 54 | GO:0031365: N-terminal protein amino acid modification | 1.87E-03 |
| 55 | GO:0019252: starch biosynthetic process | 1.99E-03 |
| 56 | GO:0042793: transcription from plastid promoter | 2.31E-03 |
| 57 | GO:0010190: cytochrome b6f complex assembly | 2.31E-03 |
| 58 | GO:0042026: protein refolding | 2.77E-03 |
| 59 | GO:1901259: chloroplast rRNA processing | 2.77E-03 |
| 60 | GO:0006458: 'de novo' protein folding | 2.77E-03 |
| 61 | GO:0030488: tRNA methylation | 2.77E-03 |
| 62 | GO:0022904: respiratory electron transport chain | 3.26E-03 |
| 63 | GO:0006400: tRNA modification | 3.26E-03 |
| 64 | GO:0032880: regulation of protein localization | 3.26E-03 |
| 65 | GO:0009793: embryo development ending in seed dormancy | 3.35E-03 |
| 66 | GO:0009627: systemic acquired resistance | 3.43E-03 |
| 67 | GO:0015995: chlorophyll biosynthetic process | 3.61E-03 |
| 68 | GO:0005978: glycogen biosynthetic process | 3.78E-03 |
| 69 | GO:0032508: DNA duplex unwinding | 3.78E-03 |
| 70 | GO:0016559: peroxisome fission | 3.78E-03 |
| 71 | GO:0016311: dephosphorylation | 3.81E-03 |
| 72 | GO:0018298: protein-chromophore linkage | 4.00E-03 |
| 73 | GO:0032544: plastid translation | 4.33E-03 |
| 74 | GO:0017004: cytochrome complex assembly | 4.33E-03 |
| 75 | GO:0071482: cellular response to light stimulus | 4.33E-03 |
| 76 | GO:0009637: response to blue light | 5.07E-03 |
| 77 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.50E-03 |
| 78 | GO:0005982: starch metabolic process | 5.50E-03 |
| 79 | GO:0010205: photoinhibition | 5.50E-03 |
| 80 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.12E-03 |
| 81 | GO:0010114: response to red light | 6.53E-03 |
| 82 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.77E-03 |
| 83 | GO:0072593: reactive oxygen species metabolic process | 6.77E-03 |
| 84 | GO:0009073: aromatic amino acid family biosynthetic process | 6.77E-03 |
| 85 | GO:0006352: DNA-templated transcription, initiation | 6.77E-03 |
| 86 | GO:0009658: chloroplast organization | 6.87E-03 |
| 87 | GO:0005983: starch catabolic process | 7.44E-03 |
| 88 | GO:2000012: regulation of auxin polar transport | 8.13E-03 |
| 89 | GO:0006364: rRNA processing | 8.80E-03 |
| 90 | GO:0010020: chloroplast fission | 8.84E-03 |
| 91 | GO:0009266: response to temperature stimulus | 8.84E-03 |
| 92 | GO:0006302: double-strand break repair | 8.84E-03 |
| 93 | GO:0010030: positive regulation of seed germination | 9.58E-03 |
| 94 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.03E-02 |
| 95 | GO:0006418: tRNA aminoacylation for protein translation | 1.19E-02 |
| 96 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.19E-02 |
| 97 | GO:0019953: sexual reproduction | 1.19E-02 |
| 98 | GO:0051321: meiotic cell cycle | 1.27E-02 |
| 99 | GO:0006012: galactose metabolic process | 1.45E-02 |
| 100 | GO:0006281: DNA repair | 1.48E-02 |
| 101 | GO:0009561: megagametogenesis | 1.53E-02 |
| 102 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.62E-02 |
| 103 | GO:0070417: cellular response to cold | 1.62E-02 |
| 104 | GO:0008284: positive regulation of cell proliferation | 1.62E-02 |
| 105 | GO:0042631: cellular response to water deprivation | 1.72E-02 |
| 106 | GO:0009958: positive gravitropism | 1.81E-02 |
| 107 | GO:0006520: cellular amino acid metabolic process | 1.81E-02 |
| 108 | GO:0009646: response to absence of light | 1.91E-02 |
| 109 | GO:0008654: phospholipid biosynthetic process | 2.00E-02 |
| 110 | GO:0055072: iron ion homeostasis | 2.00E-02 |
| 111 | GO:0071554: cell wall organization or biogenesis | 2.10E-02 |
| 112 | GO:0006635: fatty acid beta-oxidation | 2.10E-02 |
| 113 | GO:1901657: glycosyl compound metabolic process | 2.31E-02 |
| 114 | GO:0009567: double fertilization forming a zygote and endosperm | 2.41E-02 |
| 115 | GO:0009817: defense response to fungus, incompatible interaction | 3.30E-02 |
| 116 | GO:0006499: N-terminal protein myristoylation | 3.54E-02 |
| 117 | GO:0010218: response to far red light | 3.54E-02 |
| 118 | GO:0009409: response to cold | 3.60E-02 |
| 119 | GO:0009631: cold acclimation | 3.66E-02 |
| 120 | GO:0048527: lateral root development | 3.66E-02 |
| 121 | GO:0007568: aging | 3.66E-02 |
| 122 | GO:0005975: carbohydrate metabolic process | 4.24E-02 |
| 123 | GO:0051707: response to other organism | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 2 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 3 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 4 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 5 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 6 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 7 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 8 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 9 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 10 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 11 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.74E-07 |
| 12 | GO:0005528: FK506 binding | 1.35E-06 |
| 13 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.14E-06 |
| 14 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.14E-06 |
| 15 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.14E-06 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.73E-06 |
| 17 | GO:0016279: protein-lysine N-methyltransferase activity | 3.29E-05 |
| 18 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.08E-04 |
| 19 | GO:0004033: aldo-keto reductase (NADP) activity | 1.82E-04 |
| 20 | GO:0048038: quinone binding | 2.02E-04 |
| 21 | GO:0003985: acetyl-CoA C-acetyltransferase activity | 2.13E-04 |
| 22 | GO:0050308: sugar-phosphatase activity | 2.13E-04 |
| 23 | GO:0004813: alanine-tRNA ligase activity | 2.13E-04 |
| 24 | GO:0010242: oxygen evolving activity | 2.13E-04 |
| 25 | GO:0042586: peptide deformylase activity | 2.13E-04 |
| 26 | GO:0019203: carbohydrate phosphatase activity | 2.13E-04 |
| 27 | GO:0004832: valine-tRNA ligase activity | 2.13E-04 |
| 28 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.13E-04 |
| 29 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.13E-04 |
| 30 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.13E-04 |
| 31 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 4.76E-04 |
| 32 | GO:0019156: isoamylase activity | 4.76E-04 |
| 33 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.76E-04 |
| 34 | GO:0047746: chlorophyllase activity | 4.76E-04 |
| 35 | GO:0042389: omega-3 fatty acid desaturase activity | 4.76E-04 |
| 36 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.76E-04 |
| 37 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.76E-04 |
| 38 | GO:0043169: cation binding | 7.74E-04 |
| 39 | GO:0003913: DNA photolyase activity | 7.74E-04 |
| 40 | GO:0090729: toxin activity | 7.74E-04 |
| 41 | GO:0004751: ribose-5-phosphate isomerase activity | 7.74E-04 |
| 42 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 7.74E-04 |
| 43 | GO:0016851: magnesium chelatase activity | 1.10E-03 |
| 44 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.10E-03 |
| 45 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.47E-03 |
| 46 | GO:0016987: sigma factor activity | 1.47E-03 |
| 47 | GO:0001053: plastid sigma factor activity | 1.47E-03 |
| 48 | GO:0042578: phosphoric ester hydrolase activity | 2.31E-03 |
| 49 | GO:0004556: alpha-amylase activity | 2.31E-03 |
| 50 | GO:2001070: starch binding | 2.31E-03 |
| 51 | GO:0080030: methyl indole-3-acetate esterase activity | 2.31E-03 |
| 52 | GO:0016787: hydrolase activity | 2.83E-03 |
| 53 | GO:0016597: amino acid binding | 2.90E-03 |
| 54 | GO:0009881: photoreceptor activity | 3.26E-03 |
| 55 | GO:0009055: electron carrier activity | 3.72E-03 |
| 56 | GO:0043022: ribosome binding | 3.78E-03 |
| 57 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.33E-03 |
| 58 | GO:0008173: RNA methyltransferase activity | 4.33E-03 |
| 59 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.90E-03 |
| 60 | GO:0044183: protein binding involved in protein folding | 6.77E-03 |
| 61 | GO:0016788: hydrolase activity, acting on ester bonds | 7.04E-03 |
| 62 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.06E-03 |
| 63 | GO:0000049: tRNA binding | 7.44E-03 |
| 64 | GO:0051287: NAD binding | 7.91E-03 |
| 65 | GO:0004089: carbonate dehydratase activity | 8.13E-03 |
| 66 | GO:0031072: heat shock protein binding | 8.13E-03 |
| 67 | GO:0008266: poly(U) RNA binding | 8.84E-03 |
| 68 | GO:0008083: growth factor activity | 8.84E-03 |
| 69 | GO:0003887: DNA-directed DNA polymerase activity | 1.03E-02 |
| 70 | GO:0031409: pigment binding | 1.03E-02 |
| 71 | GO:0016491: oxidoreductase activity | 1.10E-02 |
| 72 | GO:0051082: unfolded protein binding | 1.26E-02 |
| 73 | GO:0008408: 3'-5' exonuclease activity | 1.27E-02 |
| 74 | GO:0008026: ATP-dependent helicase activity | 1.33E-02 |
| 75 | GO:0004812: aminoacyl-tRNA ligase activity | 1.62E-02 |
| 76 | GO:0003684: damaged DNA binding | 2.41E-02 |
| 77 | GO:0008483: transaminase activity | 2.52E-02 |
| 78 | GO:0016413: O-acetyltransferase activity | 2.62E-02 |
| 79 | GO:0042802: identical protein binding | 2.77E-02 |
| 80 | GO:0016168: chlorophyll binding | 2.84E-02 |
| 81 | GO:0102483: scopolin beta-glucosidase activity | 3.07E-02 |
| 82 | GO:0000287: magnesium ion binding | 3.31E-02 |
| 83 | GO:0030145: manganese ion binding | 3.66E-02 |
| 84 | GO:0003746: translation elongation factor activity | 3.91E-02 |
| 85 | GO:0003993: acid phosphatase activity | 4.03E-02 |
| 86 | GO:0008422: beta-glucosidase activity | 4.16E-02 |
| 87 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.29E-02 |
| 88 | GO:0046872: metal ion binding | 4.59E-02 |
| 89 | GO:0052689: carboxylic ester hydrolase activity | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
| 3 | GO:0043235: receptor complex | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 1.61E-40 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.25E-17 |
| 6 | GO:0009570: chloroplast stroma | 8.31E-17 |
| 7 | GO:0009534: chloroplast thylakoid | 5.31E-13 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.75E-10 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.20E-10 |
| 10 | GO:0009941: chloroplast envelope | 1.62E-09 |
| 11 | GO:0009579: thylakoid | 2.95E-06 |
| 12 | GO:0031977: thylakoid lumen | 4.79E-06 |
| 13 | GO:0030095: chloroplast photosystem II | 3.08E-05 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 6.13E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 1.83E-04 |
| 16 | GO:0000791: euchromatin | 2.13E-04 |
| 17 | GO:0031361: integral component of thylakoid membrane | 2.13E-04 |
| 18 | GO:0010287: plastoglobule | 3.87E-04 |
| 19 | GO:0030870: Mre11 complex | 4.76E-04 |
| 20 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.76E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 7.74E-04 |
| 22 | GO:0033281: TAT protein transport complex | 7.74E-04 |
| 23 | GO:0042646: plastid nucleoid | 1.10E-03 |
| 24 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.10E-03 |
| 25 | GO:0000795: synaptonemal complex | 1.87E-03 |
| 26 | GO:0031305: integral component of mitochondrial inner membrane | 3.78E-03 |
| 27 | GO:0009501: amyloplast | 3.78E-03 |
| 28 | GO:0042644: chloroplast nucleoid | 4.90E-03 |
| 29 | GO:0005740: mitochondrial envelope | 6.12E-03 |
| 30 | GO:0012511: monolayer-surrounded lipid storage body | 6.77E-03 |
| 31 | GO:0032040: small-subunit processome | 7.44E-03 |
| 32 | GO:0009508: plastid chromosome | 8.13E-03 |
| 33 | GO:0030076: light-harvesting complex | 9.58E-03 |
| 34 | GO:0042651: thylakoid membrane | 1.19E-02 |
| 35 | GO:0009522: photosystem I | 1.91E-02 |
| 36 | GO:0000785: chromatin | 2.20E-02 |
| 37 | GO:0005840: ribosome | 2.47E-02 |
| 38 | GO:0009295: nucleoid | 2.52E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 2.73E-02 |
| 40 | GO:0009707: chloroplast outer membrane | 3.30E-02 |