co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
2	GO:0033587: shikimate biosynthetic process	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
5	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0030149: sphingolipid catabolic process	0.00E+00
8	GO:0006412: translation	2.90E-16
9	GO:1990542: mitochondrial transmembrane transport	1.25E-04
10	GO:0009820: alkaloid metabolic process	1.25E-04
11	GO:0010365: positive regulation of ethylene biosynthetic process	1.25E-04
12	GO:0000494: box C/D snoRNA 3'-end processing	1.25E-04
13	GO:1901349: glucosinolate transport	1.25E-04
14	GO:0090449: phloem glucosinolate loading	1.25E-04
15	GO:1990258: histone glutamine methylation	1.25E-04
16	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.25E-04
17	GO:0006869: lipid transport	1.44E-04
18	GO:0042744: hydrogen peroxide catabolic process	1.54E-04
19	GO:0071497: cellular response to freezing	2.90E-04
20	GO:0045905: positive regulation of translational termination	2.90E-04
21	GO:0045901: positive regulation of translational elongation	2.90E-04
22	GO:0006452: translational frameshifting	2.90E-04
23	GO:0009967: positive regulation of signal transduction	2.90E-04
24	GO:0015786: UDP-glucose transport	2.90E-04
25	GO:0019752: carboxylic acid metabolic process	2.90E-04
26	GO:0042254: ribosome biogenesis	4.45E-04
27	GO:0015783: GDP-fucose transport	4.78E-04
28	GO:0008652: cellular amino acid biosynthetic process	4.78E-04
29	GO:0048511: rhythmic process	5.28E-04
30	GO:0009413: response to flooding	6.85E-04
31	GO:0072334: UDP-galactose transmembrane transport	6.85E-04
32	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	6.85E-04
33	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	9.08E-04
34	GO:0051781: positive regulation of cell division	9.08E-04
35	GO:0051365: cellular response to potassium ion starvation	9.08E-04
36	GO:0042274: ribosomal small subunit biogenesis	9.08E-04
37	GO:0009058: biosynthetic process	1.10E-03
38	GO:0006564: L-serine biosynthetic process	1.15E-03
39	GO:1902183: regulation of shoot apical meristem development	1.15E-03
40	GO:0031167: rRNA methylation	1.15E-03
41	GO:0009753: response to jasmonic acid	1.20E-03
42	GO:0006413: translational initiation	1.41E-03
43	GO:0009228: thiamine biosynthetic process	1.41E-03
44	GO:0009648: photoperiodism	1.68E-03
45	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.68E-03
46	GO:1900057: positive regulation of leaf senescence	1.98E-03
47	GO:0050829: defense response to Gram-negative bacterium	1.98E-03
48	GO:0006102: isocitrate metabolic process	2.29E-03
49	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.29E-03
50	GO:0009642: response to light intensity	2.29E-03
51	GO:0022900: electron transport chain	2.61E-03
52	GO:0001510: RNA methylation	2.61E-03
53	GO:0010497: plasmodesmata-mediated intercellular transport	2.61E-03
54	GO:0006367: transcription initiation from RNA polymerase II promoter	2.61E-03
55	GO:0015780: nucleotide-sugar transport	2.95E-03
56	GO:0009051: pentose-phosphate shunt, oxidative branch	2.95E-03
57	GO:0006098: pentose-phosphate shunt	2.95E-03
58	GO:2000280: regulation of root development	3.31E-03
59	GO:0006032: chitin catabolic process	3.68E-03
60	GO:0000272: polysaccharide catabolic process	4.06E-03
61	GO:0009682: induced systemic resistance	4.06E-03
62	GO:0072593: reactive oxygen species metabolic process	4.06E-03
63	GO:0009809: lignin biosynthetic process	4.20E-03
64	GO:0006364: rRNA processing	4.20E-03
65	GO:0006820: anion transport	4.45E-03
66	GO:0006626: protein targeting to mitochondrion	4.86E-03
67	GO:0006006: glucose metabolic process	4.86E-03
68	GO:0048367: shoot system development	5.11E-03
69	GO:0009887: animal organ morphogenesis	5.28E-03
70	GO:0002237: response to molecule of bacterial origin	5.28E-03
71	GO:0009751: response to salicylic acid	5.65E-03
72	GO:0006289: nucleotide-excision repair	6.61E-03
73	GO:0030150: protein import into mitochondrial matrix	6.61E-03
74	GO:0009737: response to abscisic acid	6.91E-03
75	GO:0006979: response to oxidative stress	7.58E-03
76	GO:0030245: cellulose catabolic process	8.05E-03
77	GO:0040007: growth	8.56E-03
78	GO:0071215: cellular response to abscisic acid stimulus	8.56E-03
79	GO:0010089: xylem development	9.07E-03
80	GO:0010584: pollen exine formation	9.07E-03
81	GO:0009561: megagametogenesis	9.07E-03
82	GO:0006817: phosphate ion transport	9.07E-03
83	GO:0008033: tRNA processing	1.01E-02
84	GO:0042631: cellular response to water deprivation	1.01E-02
85	GO:0009735: response to cytokinin	1.06E-02
86	GO:0006520: cellular amino acid metabolic process	1.07E-02
87	GO:0009749: response to glucose	1.18E-02
88	GO:0009409: response to cold	1.19E-02
89	GO:0009611: response to wounding	1.23E-02
90	GO:0000302: response to reactive oxygen species	1.24E-02
91	GO:0019760: glucosinolate metabolic process	1.42E-02
92	GO:0010029: regulation of seed germination	1.67E-02
93	GO:0009723: response to ethylene	1.85E-02
94	GO:0009817: defense response to fungus, incompatible interaction	1.94E-02
95	GO:0009813: flavonoid biosynthetic process	2.01E-02
96	GO:0007275: multicellular organism development	2.07E-02
97	GO:0006811: ion transport	2.08E-02
98	GO:0009853: photorespiration	2.30E-02
99	GO:0006099: tricarboxylic acid cycle	2.37E-02
100	GO:0009793: embryo development ending in seed dormancy	2.64E-02
101	GO:0008283: cell proliferation	2.75E-02
102	GO:0008643: carbohydrate transport	2.91E-02
103	GO:0048364: root development	3.06E-02
104	GO:0009664: plant-type cell wall organization	3.24E-02
105	GO:0055114: oxidation-reduction process	3.34E-02
106	GO:0006857: oligopeptide transport	3.57E-02
107	GO:0050832: defense response to fungus	3.79E-02
108	GO:0006096: glycolytic process	3.83E-02
109	GO:0009620: response to fungus	4.10E-02
110	GO:0042545: cell wall modification	4.28E-02
111	GO:0009651: response to salt stress	4.52E-02
112	GO:0005975: carbohydrate metabolic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0003796: lysozyme activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	6.80E-22
5	GO:0003729: mRNA binding	6.15E-07
6	GO:0090448: glucosinolate:proton symporter activity	1.25E-04
7	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	1.25E-04
8	GO:1990259: histone-glutamine methyltransferase activity	1.25E-04
9	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.25E-04
10	GO:0004618: phosphoglycerate kinase activity	2.90E-04
11	GO:0004617: phosphoglycerate dehydrogenase activity	2.90E-04
12	GO:0004750: ribulose-phosphate 3-epimerase activity	2.90E-04
13	GO:0005078: MAP-kinase scaffold activity	2.90E-04
14	GO:0019172: glyoxalase III activity	2.90E-04
15	GO:0008289: lipid binding	3.44E-04
16	GO:0004601: peroxidase activity	4.32E-04
17	GO:0008649: rRNA methyltransferase activity	4.78E-04
18	GO:0005457: GDP-fucose transmembrane transporter activity	4.78E-04
19	GO:0005460: UDP-glucose transmembrane transporter activity	6.85E-04
20	GO:0017077: oxidative phosphorylation uncoupler activity	6.85E-04
21	GO:0019201: nucleotide kinase activity	6.85E-04
22	GO:0004449: isocitrate dehydrogenase (NAD+) activity	6.85E-04
23	GO:0005199: structural constituent of cell wall	8.52E-04
24	GO:0004345: glucose-6-phosphate dehydrogenase activity	9.08E-04
25	GO:0070628: proteasome binding	9.08E-04
26	GO:0008022: protein C-terminus binding	9.08E-04
27	GO:0005459: UDP-galactose transmembrane transporter activity	1.15E-03
28	GO:0008200: ion channel inhibitor activity	1.41E-03
29	GO:0031593: polyubiquitin binding	1.41E-03
30	GO:0004656: procollagen-proline 4-dioxygenase activity	1.68E-03
31	GO:0004017: adenylate kinase activity	1.68E-03
32	GO:0003743: translation initiation factor activity	1.87E-03
33	GO:0016831: carboxy-lyase activity	1.98E-03
34	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.98E-03
35	GO:0030515: snoRNA binding	1.98E-03
36	GO:0043022: ribosome binding	2.29E-03
37	GO:0015288: porin activity	2.29E-03
38	GO:0008135: translation factor activity, RNA binding	2.61E-03
39	GO:0008308: voltage-gated anion channel activity	2.61E-03
40	GO:0016844: strictosidine synthase activity	3.31E-03
41	GO:0004568: chitinase activity	3.68E-03
42	GO:0051287: NAD binding	3.77E-03
43	GO:0005315: inorganic phosphate transmembrane transporter activity	4.86E-03
44	GO:0015114: phosphate ion transmembrane transporter activity	4.86E-03
45	GO:0015266: protein channel activity	4.86E-03
46	GO:0008083: growth factor activity	5.28E-03
47	GO:0004867: serine-type endopeptidase inhibitor activity	5.71E-03
48	GO:0031418: L-ascorbic acid binding	6.61E-03
49	GO:0043130: ubiquitin binding	6.61E-03
50	GO:0019843: rRNA binding	7.46E-03
51	GO:0022891: substrate-specific transmembrane transporter activity	8.56E-03
52	GO:0008810: cellulase activity	8.56E-03
53	GO:0008514: organic anion transmembrane transporter activity	9.07E-03
54	GO:0005351: sugar:proton symporter activity	1.01E-02
55	GO:0003684: damaged DNA binding	1.42E-02
56	GO:0020037: heme binding	1.49E-02
57	GO:0016597: amino acid binding	1.54E-02
58	GO:0051213: dioxygenase activity	1.61E-02
59	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.94E-02
60	GO:0030145: manganese ion binding	2.15E-02
61	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.30E-02
62	GO:0003746: translation elongation factor activity	2.30E-02
63	GO:0008422: beta-glucosidase activity	2.45E-02
64	GO:0050661: NADP binding	2.52E-02
65	GO:0015293: symporter activity	2.99E-02
66	GO:0003824: catalytic activity	3.26E-02
67	GO:0045330: aspartyl esterase activity	3.66E-02
68	GO:0045735: nutrient reservoir activity	3.83E-02
69	GO:0004650: polygalacturonase activity	4.10E-02
70	GO:0030599: pectinesterase activity	4.19E-02
71	GO:0015035: protein disulfide oxidoreductase activity	4.47E-02
72	GO:0008026: ATP-dependent helicase activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	1.09E-20
2	GO:0022627: cytosolic small ribosomal subunit	2.88E-15
3	GO:0009506: plasmodesma	2.67E-14
4	GO:0022625: cytosolic large ribosomal subunit	3.76E-11
5	GO:0005840: ribosome	4.07E-11
6	GO:0005829: cytosol	2.19E-09
7	GO:0005774: vacuolar membrane	5.08E-08
8	GO:0005730: nucleolus	1.09E-06
9	GO:0005618: cell wall	6.40E-06
10	GO:0016020: membrane	1.02E-04
11	GO:0015934: large ribosomal subunit	2.15E-04
12	GO:0009530: primary cell wall	4.78E-04
13	GO:0005741: mitochondrial outer membrane	5.28E-04
14	GO:0005783: endoplasmic reticulum	8.33E-04
15	GO:0005576: extracellular region	9.76E-04
16	GO:0005737: cytoplasm	1.40E-03
17	GO:0031428: box C/D snoRNP complex	1.41E-03
18	GO:0009707: chloroplast outer membrane	1.93E-03
19	GO:0046930: pore complex	2.61E-03
20	GO:0005742: mitochondrial outer membrane translocase complex	2.61E-03
21	GO:0009505: plant-type cell wall	2.73E-03
22	GO:0015030: Cajal body	3.31E-03
23	GO:0005773: vacuole	3.93E-03
24	GO:0032040: small-subunit processome	4.45E-03
25	GO:0031012: extracellular matrix	4.86E-03
26	GO:0015935: small ribosomal subunit	7.56E-03
27	GO:0016592: mediator complex	1.30E-02
28	GO:0071944: cell periphery	1.36E-02
29	GO:0005794: Golgi apparatus	2.19E-02
30	GO:0005743: mitochondrial inner membrane	2.73E-02
31	GO:0009507: chloroplast	3.37E-02
32	GO:0000502: proteasome complex	3.40E-02
33	GO:0009536: plastid	3.74E-02
34	GO:0005834: heterotrimeric G-protein complex	4.01E-02
35	GO:0005886: plasma membrane	4.49E-02
36	GO:0005789: endoplasmic reticulum membrane	4.88E-02