co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G12490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
3	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
4	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
5	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
6	GO:0046487: glyoxylate metabolic process	0.00E+00
7	GO:0042430: indole-containing compound metabolic process	0.00E+00
8	GO:0030149: sphingolipid catabolic process	0.00E+00
9	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
10	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
11	GO:0006412: translation	2.38E-20
12	GO:0009735: response to cytokinin	1.64E-06
13	GO:0042254: ribosome biogenesis	2.08E-06
14	GO:0042744: hydrogen peroxide catabolic process	3.12E-05
15	GO:0006820: anion transport	5.59E-05
16	GO:0042274: ribosomal small subunit biogenesis	6.97E-05
17	GO:0002237: response to molecule of bacterial origin	8.27E-05
18	GO:0006564: L-serine biosynthetic process	1.10E-04
19	GO:0009651: response to salt stress	2.44E-04
20	GO:0009820: alkaloid metabolic process	3.32E-04
21	GO:0010365: positive regulation of ethylene biosynthetic process	3.32E-04
22	GO:1901430: positive regulation of syringal lignin biosynthetic process	3.32E-04
23	GO:0032365: intracellular lipid transport	3.32E-04
24	GO:1901349: glucosinolate transport	3.32E-04
25	GO:0090449: phloem glucosinolate loading	3.32E-04
26	GO:0019605: butyrate metabolic process	3.32E-04
27	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	3.32E-04
28	GO:0006083: acetate metabolic process	3.32E-04
29	GO:1990542: mitochondrial transmembrane transport	3.32E-04
30	GO:0031540: regulation of anthocyanin biosynthetic process	3.52E-04
31	GO:0055114: oxidation-reduction process	6.32E-04
32	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	7.24E-04
33	GO:0009967: positive regulation of signal transduction	7.24E-04
34	GO:0015786: UDP-glucose transport	7.24E-04
35	GO:0019752: carboxylic acid metabolic process	7.24E-04
36	GO:0051788: response to misfolded protein	7.24E-04
37	GO:1990069: stomatal opening	7.24E-04
38	GO:0006626: protein targeting to mitochondrion	1.06E-03
39	GO:0015783: GDP-fucose transport	1.17E-03
40	GO:1902626: assembly of large subunit precursor of preribosome	1.17E-03
41	GO:0008333: endosome to lysosome transport	1.17E-03
42	GO:0008652: cellular amino acid biosynthetic process	1.17E-03
43	GO:0045793: positive regulation of cell size	1.17E-03
44	GO:0009058: biosynthetic process	1.21E-03
45	GO:0006413: translational initiation	1.64E-03
46	GO:0006166: purine ribonucleoside salvage	1.68E-03
47	GO:0072334: UDP-galactose transmembrane transport	1.68E-03
48	GO:0009647: skotomorphogenesis	1.68E-03
49	GO:0009743: response to carbohydrate	1.68E-03
50	GO:0006168: adenine salvage	1.68E-03
51	GO:0001676: long-chain fatty acid metabolic process	1.68E-03
52	GO:0046513: ceramide biosynthetic process	1.68E-03
53	GO:0032877: positive regulation of DNA endoreduplication	1.68E-03
54	GO:0046836: glycolipid transport	1.68E-03
55	GO:0009413: response to flooding	1.68E-03
56	GO:0006869: lipid transport	1.84E-03
57	GO:0048511: rhythmic process	2.00E-03
58	GO:0015992: proton transport	2.00E-03
59	GO:0009751: response to salicylic acid	2.20E-03
60	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	2.26E-03
61	GO:0051781: positive regulation of cell division	2.26E-03
62	GO:0051365: cellular response to potassium ion starvation	2.26E-03
63	GO:0048442: sepal development	2.26E-03
64	GO:0010363: regulation of plant-type hypersensitive response	2.26E-03
65	GO:0040007: growth	2.38E-03
66	GO:0006817: phosphate ion transport	2.59E-03
67	GO:0006097: glyoxylate cycle	2.89E-03
68	GO:1902183: regulation of shoot apical meristem development	2.89E-03
69	GO:0044209: AMP salvage	2.89E-03
70	GO:0045116: protein neddylation	2.89E-03
71	GO:0032957: inositol trisphosphate metabolic process	2.89E-03
72	GO:0009697: salicylic acid biosynthetic process	2.89E-03
73	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.89E-03
74	GO:0051603: proteolysis involved in cellular protein catabolic process	2.98E-03
75	GO:0006096: glycolytic process	3.53E-03
76	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.57E-03
77	GO:0043248: proteasome assembly	3.57E-03
78	GO:0009228: thiamine biosynthetic process	3.57E-03
79	GO:0002238: response to molecule of fungal origin	3.57E-03
80	GO:0009635: response to herbicide	3.57E-03
81	GO:0006623: protein targeting to vacuole	3.76E-03
82	GO:0009737: response to abscisic acid	4.21E-03
83	GO:0009648: photoperiodism	4.30E-03
84	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.30E-03
85	GO:0009554: megasporogenesis	4.30E-03
86	GO:0009610: response to symbiotic fungus	5.07E-03
87	GO:0048528: post-embryonic root development	5.07E-03
88	GO:1900056: negative regulation of leaf senescence	5.07E-03
89	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	5.07E-03
90	GO:1900057: positive regulation of leaf senescence	5.07E-03
91	GO:0050829: defense response to Gram-negative bacterium	5.07E-03
92	GO:0009793: embryo development ending in seed dormancy	5.11E-03
93	GO:0006102: isocitrate metabolic process	5.89E-03
94	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.89E-03
95	GO:0009642: response to light intensity	5.89E-03
96	GO:0009690: cytokinin metabolic process	5.89E-03
97	GO:0048658: anther wall tapetum development	5.89E-03
98	GO:0009611: response to wounding	6.43E-03
99	GO:0009845: seed germination	6.58E-03
100	GO:0006367: transcription initiation from RNA polymerase II promoter	6.76E-03
101	GO:0010497: plasmodesmata-mediated intercellular transport	6.76E-03
102	GO:0007389: pattern specification process	6.76E-03
103	GO:0006979: response to oxidative stress	7.08E-03
104	GO:0015780: nucleotide-sugar transport	7.67E-03
105	GO:0098656: anion transmembrane transport	7.67E-03
106	GO:0009245: lipid A biosynthetic process	7.67E-03
107	GO:0080144: amino acid homeostasis	7.67E-03
108	GO:0006754: ATP biosynthetic process	7.67E-03
109	GO:0048589: developmental growth	7.67E-03
110	GO:0006811: ion transport	8.40E-03
111	GO:0042761: very long-chain fatty acid biosynthetic process	8.61E-03
112	GO:2000280: regulation of root development	8.61E-03
113	GO:0048364: root development	9.53E-03
114	GO:0048441: petal development	9.61E-03
115	GO:0006032: chitin catabolic process	9.61E-03
116	GO:0048829: root cap development	9.61E-03
117	GO:0009753: response to jasmonic acid	9.94E-03
118	GO:0072593: reactive oxygen species metabolic process	1.06E-02
119	GO:0009682: induced systemic resistance	1.06E-02
120	GO:0006511: ubiquitin-dependent protein catabolic process	1.06E-02
121	GO:0015770: sucrose transport	1.06E-02
122	GO:0000272: polysaccharide catabolic process	1.06E-02
123	GO:0009617: response to bacterium	1.12E-02
124	GO:0006631: fatty acid metabolic process	1.15E-02
125	GO:0008361: regulation of cell size	1.17E-02
126	GO:0012501: programmed cell death	1.17E-02
127	GO:0015706: nitrate transport	1.17E-02
128	GO:0009409: response to cold	1.26E-02
129	GO:0006006: glucose metabolic process	1.28E-02
130	GO:0006807: nitrogen compound metabolic process	1.28E-02
131	GO:0008643: carbohydrate transport	1.35E-02
132	GO:0009636: response to toxic substance	1.40E-02
133	GO:0007034: vacuolar transport	1.40E-02
134	GO:0042343: indole glucosinolate metabolic process	1.51E-02
135	GO:0010167: response to nitrate	1.51E-02
136	GO:0009664: plant-type cell wall organization	1.57E-02
137	GO:0046686: response to cadmium ion	1.64E-02
138	GO:0009809: lignin biosynthetic process	1.69E-02
139	GO:0006364: rRNA processing	1.69E-02
140	GO:0009116: nucleoside metabolic process	1.76E-02
141	GO:0000027: ribosomal large subunit assembly	1.76E-02
142	GO:0030150: protein import into mitochondrial matrix	1.76E-02
143	GO:0006289: nucleotide-excision repair	1.76E-02
144	GO:0006857: oligopeptide transport	1.81E-02
145	GO:0048366: leaf development	1.92E-02
146	GO:0009414: response to water deprivation	2.01E-02
147	GO:0051260: protein homooligomerization	2.02E-02
148	GO:0098542: defense response to other organism	2.02E-02
149	GO:0010431: seed maturation	2.02E-02
150	GO:0080167: response to karrikin	2.05E-02
151	GO:0048367: shoot system development	2.06E-02
152	GO:0030245: cellulose catabolic process	2.15E-02
153	GO:0016226: iron-sulfur cluster assembly	2.15E-02
154	GO:0007005: mitochondrion organization	2.15E-02
155	GO:0044550: secondary metabolite biosynthetic process	2.28E-02
156	GO:0071215: cellular response to abscisic acid stimulus	2.29E-02
157	GO:0009625: response to insect	2.29E-02
158	GO:0009624: response to nematode	2.41E-02
159	GO:0010089: xylem development	2.43E-02
160	GO:0010584: pollen exine formation	2.43E-02
161	GO:0009561: megagametogenesis	2.43E-02
162	GO:0042147: retrograde transport, endosome to Golgi	2.57E-02
163	GO:0010118: stomatal movement	2.72E-02
164	GO:0015991: ATP hydrolysis coupled proton transport	2.72E-02
165	GO:0042631: cellular response to water deprivation	2.72E-02
166	GO:0080022: primary root development	2.72E-02
167	GO:0000413: protein peptidyl-prolyl isomerization	2.72E-02
168	GO:0006520: cellular amino acid metabolic process	2.87E-02
169	GO:0010154: fruit development	2.87E-02
170	GO:0010197: polar nucleus fusion	2.87E-02
171	GO:0055085: transmembrane transport	3.01E-02
172	GO:0010183: pollen tube guidance	3.18E-02
173	GO:0048825: cotyledon development	3.18E-02
174	GO:0009749: response to glucose	3.18E-02
175	GO:0000302: response to reactive oxygen species	3.33E-02
176	GO:0010193: response to ozone	3.33E-02
177	GO:0006635: fatty acid beta-oxidation	3.33E-02
178	GO:0030163: protein catabolic process	3.66E-02
179	GO:0040008: regulation of growth	3.96E-02
180	GO:0007623: circadian rhythm	4.15E-02
181	GO:0000910: cytokinesis	4.16E-02
182	GO:0010029: regulation of seed germination	4.51E-02
183	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.63E-02
184	GO:0009739: response to gibberellin	4.63E-02
185	GO:0042128: nitrate assimilation	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0016881: acid-amino acid ligase activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
5	GO:0003796: lysozyme activity	0.00E+00
6	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0008752: FMN reductase activity	0.00E+00
8	GO:0003735: structural constituent of ribosome	7.78E-28
9	GO:0004617: phosphoglycerate dehydrogenase activity	4.99E-06
10	GO:0003729: mRNA binding	8.25E-06
11	GO:0004298: threonine-type endopeptidase activity	8.40E-06
12	GO:0015288: porin activity	1.02E-05
13	GO:0008308: voltage-gated anion channel activity	1.46E-05
14	GO:0004601: peroxidase activity	1.50E-04
15	GO:0020037: heme binding	2.12E-04
16	GO:0016229: steroid dehydrogenase activity	3.32E-04
17	GO:0003987: acetate-CoA ligase activity	3.32E-04
18	GO:0000824: inositol tetrakisphosphate 3-kinase activity	3.32E-04
19	GO:0047326: inositol tetrakisphosphate 5-kinase activity	3.32E-04
20	GO:0047760: butyrate-CoA ligase activity	3.32E-04
21	GO:0070401: NADP+ binding	3.32E-04
22	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	3.32E-04
23	GO:0090448: glucosinolate:proton symporter activity	3.32E-04
24	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	3.32E-04
25	GO:0005199: structural constituent of cell wall	3.57E-04
26	GO:0051287: NAD binding	3.93E-04
27	GO:0050291: sphingosine N-acyltransferase activity	7.24E-04
28	GO:0004618: phosphoglycerate kinase activity	7.24E-04
29	GO:0019781: NEDD8 activating enzyme activity	7.24E-04
30	GO:0004047: aminomethyltransferase activity	7.24E-04
31	GO:0004750: ribulose-phosphate 3-epimerase activity	7.24E-04
32	GO:0032934: sterol binding	7.24E-04
33	GO:0019172: glyoxalase III activity	7.24E-04
34	GO:0005078: MAP-kinase scaffold activity	7.24E-04
35	GO:0008517: folic acid transporter activity	7.24E-04
36	GO:0004634: phosphopyruvate hydratase activity	7.24E-04
37	GO:0008233: peptidase activity	1.11E-03
38	GO:0019843: rRNA binding	1.12E-03
39	GO:0005457: GDP-fucose transmembrane transporter activity	1.17E-03
40	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.17E-03
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.17E-03
42	GO:0008253: 5'-nucleotidase activity	1.17E-03
43	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.17E-03
44	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.68E-03
45	GO:0035198: miRNA binding	1.68E-03
46	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.68E-03
47	GO:0017077: oxidative phosphorylation uncoupler activity	1.68E-03
48	GO:0017089: glycolipid transporter activity	1.68E-03
49	GO:0019201: nucleotide kinase activity	1.68E-03
50	GO:0003999: adenine phosphoribosyltransferase activity	1.68E-03
51	GO:0005460: UDP-glucose transmembrane transporter activity	1.68E-03
52	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.68E-03
53	GO:0010011: auxin binding	2.26E-03
54	GO:0051861: glycolipid binding	2.26E-03
55	GO:0070628: proteasome binding	2.26E-03
56	GO:0008022: protein C-terminus binding	2.26E-03
57	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.26E-03
58	GO:0008514: organic anion transmembrane transporter activity	2.59E-03
59	GO:0005459: UDP-galactose transmembrane transporter activity	2.89E-03
60	GO:0008641: small protein activating enzyme activity	2.89E-03
61	GO:0000287: magnesium ion binding	3.46E-03
62	GO:0031593: polyubiquitin binding	3.57E-03
63	GO:0031177: phosphopantetheine binding	3.57E-03
64	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.57E-03
65	GO:0016208: AMP binding	3.57E-03
66	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.57E-03
67	GO:0004866: endopeptidase inhibitor activity	3.57E-03
68	GO:0008200: ion channel inhibitor activity	3.57E-03
69	GO:0008289: lipid binding	4.04E-03
70	GO:0004017: adenylate kinase activity	4.30E-03
71	GO:0000035: acyl binding	4.30E-03
72	GO:0102391: decanoate--CoA ligase activity	4.30E-03
73	GO:0004656: procollagen-proline 4-dioxygenase activity	4.30E-03
74	GO:0016831: carboxy-lyase activity	5.07E-03
75	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.07E-03
76	GO:0004467: long-chain fatty acid-CoA ligase activity	5.07E-03
77	GO:0016597: amino acid binding	5.50E-03
78	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.89E-03
79	GO:0052747: sinapyl alcohol dehydrogenase activity	5.89E-03
80	GO:0004033: aldo-keto reductase (NADP) activity	5.89E-03
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.61E-03
82	GO:0000989: transcription factor activity, transcription factor binding	7.67E-03
83	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	7.67E-03
84	GO:0016844: strictosidine synthase activity	8.61E-03
85	GO:0015112: nitrate transmembrane transporter activity	8.61E-03
86	GO:0030145: manganese ion binding	8.81E-03
87	GO:0004568: chitinase activity	9.61E-03
88	GO:0008515: sucrose transmembrane transporter activity	1.06E-02
89	GO:0008794: arsenate reductase (glutaredoxin) activity	1.06E-02
90	GO:0008559: xenobiotic-transporting ATPase activity	1.06E-02
91	GO:0003743: translation initiation factor activity	1.09E-02
92	GO:0005507: copper ion binding	1.15E-02
93	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.17E-02
94	GO:0004364: glutathione transferase activity	1.20E-02
95	GO:0015114: phosphate ion transmembrane transporter activity	1.28E-02
96	GO:0015266: protein channel activity	1.28E-02
97	GO:0005315: inorganic phosphate transmembrane transporter activity	1.28E-02
98	GO:0015293: symporter activity	1.40E-02
99	GO:0004867: serine-type endopeptidase inhibitor activity	1.51E-02
100	GO:0051119: sugar transmembrane transporter activity	1.51E-02
101	GO:0031418: L-ascorbic acid binding	1.76E-02
102	GO:0043130: ubiquitin binding	1.76E-02
103	GO:0008134: transcription factor binding	1.76E-02
104	GO:0045735: nutrient reservoir activity	2.00E-02
105	GO:0022891: substrate-specific transmembrane transporter activity	2.29E-02
106	GO:0008810: cellulase activity	2.29E-02
107	GO:0015035: protein disulfide oxidoreductase activity	2.48E-02
108	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.84E-02
109	GO:0010181: FMN binding	3.02E-02
110	GO:0004872: receptor activity	3.18E-02
111	GO:0030170: pyridoxal phosphate binding	3.34E-02
112	GO:0003684: damaged DNA binding	3.82E-02
113	GO:0005351: sugar:proton symporter activity	4.05E-02
114	GO:0051213: dioxygenase activity	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0022626: cytosolic ribosome	3.34E-23
2	GO:0022625: cytosolic large ribosomal subunit	4.62E-20
3	GO:0005840: ribosome	1.04E-15
4	GO:0005829: cytosol	2.36E-15
5	GO:0009506: plasmodesma	7.19E-14
6	GO:0005774: vacuolar membrane	1.28E-13
7	GO:0022627: cytosolic small ribosomal subunit	5.44E-13
8	GO:0016020: membrane	4.24E-10
9	GO:0005773: vacuole	1.84E-08
10	GO:0000502: proteasome complex	2.18E-07
11	GO:0005618: cell wall	3.97E-07
12	GO:0015934: large ribosomal subunit	5.69E-07
13	GO:0005886: plasma membrane	3.10E-06
14	GO:0005839: proteasome core complex	8.40E-06
15	GO:0005741: mitochondrial outer membrane	8.40E-06
16	GO:0046930: pore complex	1.46E-05
17	GO:0009530: primary cell wall	1.77E-05
18	GO:0005730: nucleolus	6.98E-05
19	GO:0005737: cytoplasm	1.27E-04
20	GO:0005794: Golgi apparatus	5.74E-04
21	GO:0000015: phosphopyruvate hydratase complex	7.24E-04
22	GO:0046861: glyoxysomal membrane	1.17E-03
23	GO:0005758: mitochondrial intermembrane space	1.65E-03
24	GO:0070469: respiratory chain	1.82E-03
25	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.26E-03
26	GO:0005783: endoplasmic reticulum	2.55E-03
27	GO:0030904: retromer complex	3.57E-03
28	GO:0005851: eukaryotic translation initiation factor 2B complex	3.57E-03
29	GO:0005771: multivesicular body	3.57E-03
30	GO:0005576: extracellular region	6.53E-03
31	GO:0009514: glyoxysome	6.76E-03
32	GO:0019773: proteasome core complex, alpha-subunit complex	6.76E-03
33	GO:0005742: mitochondrial outer membrane translocase complex	6.76E-03
34	GO:0005777: peroxisome	7.88E-03
35	GO:0000325: plant-type vacuole	8.81E-03
36	GO:0005740: mitochondrial envelope	9.61E-03
37	GO:0017119: Golgi transport complex	9.61E-03
38	GO:0008541: proteasome regulatory particle, lid subcomplex	1.06E-02
39	GO:0015935: small ribosomal subunit	2.02E-02
40	GO:0005743: mitochondrial inner membrane	3.05E-02
41	GO:0009505: plant-type cell wall	3.06E-02
42	GO:0048046: apoplast	3.45E-02
43	GO:0071944: cell periphery	3.66E-02
44	GO:0005759: mitochondrial matrix	3.78E-02
45	GO:0005788: endoplasmic reticulum lumen	4.51E-02
46	GO:0005887: integral component of plasma membrane	4.86E-02