GO Enrichment Analysis of Co-expressed Genes with
AT4G11980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0009657: plastid organization | 4.32E-06 |
| 4 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.67E-05 |
| 5 | GO:1904964: positive regulation of phytol biosynthetic process | 1.67E-05 |
| 6 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.67E-05 |
| 7 | GO:0000256: allantoin catabolic process | 4.35E-05 |
| 8 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.35E-05 |
| 9 | GO:0010136: ureide catabolic process | 7.77E-05 |
| 10 | GO:0006013: mannose metabolic process | 7.77E-05 |
| 11 | GO:0006145: purine nucleobase catabolic process | 1.17E-04 |
| 12 | GO:0015979: photosynthesis | 1.45E-04 |
| 13 | GO:0018298: protein-chromophore linkage | 1.49E-04 |
| 14 | GO:0006021: inositol biosynthetic process | 1.61E-04 |
| 15 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.59E-04 |
| 16 | GO:0010190: cytochrome b6f complex assembly | 2.59E-04 |
| 17 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.59E-04 |
| 18 | GO:0046855: inositol phosphate dephosphorylation | 2.59E-04 |
| 19 | GO:0009645: response to low light intensity stimulus | 3.66E-04 |
| 20 | GO:0006396: RNA processing | 4.90E-04 |
| 21 | GO:0006415: translational termination | 7.34E-04 |
| 22 | GO:0006790: sulfur compound metabolic process | 8.01E-04 |
| 23 | GO:0016024: CDP-diacylglycerol biosynthetic process | 8.01E-04 |
| 24 | GO:0006006: glucose metabolic process | 8.70E-04 |
| 25 | GO:0009767: photosynthetic electron transport chain | 8.70E-04 |
| 26 | GO:0019253: reductive pentose-phosphate cycle | 9.39E-04 |
| 27 | GO:0019853: L-ascorbic acid biosynthetic process | 1.01E-03 |
| 28 | GO:0046854: phosphatidylinositol phosphorylation | 1.01E-03 |
| 29 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.23E-03 |
| 30 | GO:0006825: copper ion transport | 1.23E-03 |
| 31 | GO:0008299: isoprenoid biosynthetic process | 1.23E-03 |
| 32 | GO:0006418: tRNA aminoacylation for protein translation | 1.23E-03 |
| 33 | GO:0019252: starch biosynthetic process | 2.00E-03 |
| 34 | GO:0042128: nitrate assimilation | 2.88E-03 |
| 35 | GO:0048481: plant ovule development | 3.20E-03 |
| 36 | GO:0009813: flavonoid biosynthetic process | 3.31E-03 |
| 37 | GO:0010114: response to red light | 4.47E-03 |
| 38 | GO:0009644: response to high light intensity | 4.71E-03 |
| 39 | GO:0006857: oligopeptide transport | 5.74E-03 |
| 40 | GO:0006417: regulation of translation | 5.88E-03 |
| 41 | GO:0006096: glycolytic process | 6.15E-03 |
| 42 | GO:0006413: translational initiation | 9.74E-03 |
| 43 | GO:0009409: response to cold | 1.05E-02 |
| 44 | GO:0080167: response to karrikin | 1.62E-02 |
| 45 | GO:0009793: embryo development ending in seed dormancy | 1.80E-02 |
| 46 | GO:0006397: mRNA processing | 2.21E-02 |
| 47 | GO:0009753: response to jasmonic acid | 2.25E-02 |
| 48 | GO:0055114: oxidation-reduction process | 2.39E-02 |
| 49 | GO:0009611: response to wounding | 3.27E-02 |
| 50 | GO:0055085: transmembrane transport | 3.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003858: 3-hydroxybutyrate dehydrogenase activity | 0.00E+00 |
| 2 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 3 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 4 | GO:0004830: tryptophan-tRNA ligase activity | 1.67E-05 |
| 5 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.67E-05 |
| 6 | GO:0004008: copper-exporting ATPase activity | 1.67E-05 |
| 7 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.35E-05 |
| 8 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.35E-05 |
| 9 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.35E-05 |
| 10 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.35E-05 |
| 11 | GO:0030267: glyoxylate reductase (NADP) activity | 7.77E-05 |
| 12 | GO:0070402: NADPH binding | 7.77E-05 |
| 13 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 7.77E-05 |
| 14 | GO:0016149: translation release factor activity, codon specific | 1.17E-04 |
| 15 | GO:0016168: chlorophyll binding | 1.18E-04 |
| 16 | GO:0009011: starch synthase activity | 1.61E-04 |
| 17 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.61E-04 |
| 18 | GO:0043495: protein anchor | 1.61E-04 |
| 19 | GO:0051287: NAD binding | 3.02E-04 |
| 20 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 3.11E-04 |
| 21 | GO:0004559: alpha-mannosidase activity | 3.11E-04 |
| 22 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.11E-04 |
| 23 | GO:0019899: enzyme binding | 3.66E-04 |
| 24 | GO:0005375: copper ion transmembrane transporter activity | 4.82E-04 |
| 25 | GO:0003747: translation release factor activity | 5.42E-04 |
| 26 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 8.70E-04 |
| 27 | GO:0031409: pigment binding | 1.08E-03 |
| 28 | GO:0022891: substrate-specific transmembrane transporter activity | 1.47E-03 |
| 29 | GO:0003727: single-stranded RNA binding | 1.56E-03 |
| 30 | GO:0004812: aminoacyl-tRNA ligase activity | 1.64E-03 |
| 31 | GO:0008080: N-acetyltransferase activity | 1.82E-03 |
| 32 | GO:0016853: isomerase activity | 1.91E-03 |
| 33 | GO:0030145: manganese ion binding | 3.53E-03 |
| 34 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.76E-03 |
| 35 | GO:0050661: NADP binding | 4.11E-03 |
| 36 | GO:0043621: protein self-association | 4.71E-03 |
| 37 | GO:0015293: symporter activity | 4.83E-03 |
| 38 | GO:0016746: transferase activity, transferring acyl groups | 7.13E-03 |
| 39 | GO:0046872: metal ion binding | 9.25E-03 |
| 40 | GO:0003743: translation initiation factor activity | 1.14E-02 |
| 41 | GO:0042802: identical protein binding | 1.21E-02 |
| 42 | GO:0052689: carboxylic ester hydrolase activity | 1.74E-02 |
| 43 | GO:0042803: protein homodimerization activity | 1.91E-02 |
| 44 | GO:0030246: carbohydrate binding | 3.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009535: chloroplast thylakoid membrane | 2.20E-10 |
| 2 | GO:0009507: chloroplast | 2.73E-09 |
| 3 | GO:0009782: photosystem I antenna complex | 1.67E-05 |
| 4 | GO:0009570: chloroplast stroma | 6.84E-05 |
| 5 | GO:0009941: chloroplast envelope | 2.47E-04 |
| 6 | GO:0009534: chloroplast thylakoid | 5.59E-04 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 5.92E-04 |
| 8 | GO:0030076: light-harvesting complex | 1.01E-03 |
| 9 | GO:0042651: thylakoid membrane | 1.23E-03 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.23E-03 |
| 11 | GO:0031969: chloroplast membrane | 1.49E-03 |
| 12 | GO:0009523: photosystem II | 2.00E-03 |
| 13 | GO:0019898: extrinsic component of membrane | 2.00E-03 |
| 14 | GO:0031977: thylakoid lumen | 4.23E-03 |
| 15 | GO:0009579: thylakoid | 4.58E-03 |
| 16 | GO:0010287: plastoglobule | 7.87E-03 |
| 17 | GO:0005774: vacuolar membrane | 2.69E-02 |
| 18 | GO:0048046: apoplast | 2.83E-02 |
| 19 | GO:0005618: cell wall | 3.08E-02 |
| 20 | GO:0005777: peroxisome | 3.55E-02 |