co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G11740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035266: meristem growth	3.22E-06
2	GO:0007292: female gamete generation	3.22E-06
3	GO:0051788: response to misfolded protein	8.96E-06
4	GO:0010311: lateral root formation	1.58E-05
5	GO:0006517: protein deglycosylation	1.68E-05
6	GO:0060968: regulation of gene silencing	1.68E-05
7	GO:0045087: innate immune response	1.99E-05
8	GO:0006515: misfolded or incompletely synthesized protein catabolic process	2.64E-05
9	GO:0006516: glycoprotein catabolic process	2.64E-05
10	GO:0010188: response to microbial phytotoxin	3.75E-05
11	GO:2000762: regulation of phenylpropanoid metabolic process	4.99E-05
12	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.35E-05
13	GO:0048827: phyllome development	6.35E-05
14	GO:0048232: male gamete generation	6.35E-05
15	GO:0043248: proteasome assembly	6.35E-05
16	GO:0042176: regulation of protein catabolic process	6.35E-05
17	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	9.36E-05
18	GO:0010078: maintenance of root meristem identity	1.10E-04
19	GO:0046686: response to cadmium ion	1.33E-04
20	GO:0009060: aerobic respiration	1.45E-04
21	GO:0048829: root cap development	1.83E-04
22	GO:0016485: protein processing	2.02E-04
23	GO:0010015: root morphogenesis	2.02E-04
24	GO:0009698: phenylpropanoid metabolic process	2.02E-04
25	GO:0009933: meristem structural organization	2.64E-04
26	GO:0090351: seedling development	2.85E-04
27	GO:0009751: response to salicylic acid	3.18E-04
28	GO:0030433: ubiquitin-dependent ERAD pathway	3.97E-04
29	GO:0010193: response to ozone	5.93E-04
30	GO:0030163: protein catabolic process	6.45E-04
31	GO:0006511: ubiquitin-dependent protein catabolic process	7.56E-04
32	GO:0006499: N-terminal protein myristoylation	9.49E-04
33	GO:0009965: leaf morphogenesis	1.32E-03
34	GO:0048367: shoot system development	1.69E-03
35	GO:0051726: regulation of cell cycle	1.95E-03
36	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.91E-03
37	GO:0006508: proteolysis	3.28E-03
38	GO:0009408: response to heat	5.48E-03
39	GO:0048364: root development	5.65E-03

Rank	GO Term	Adjusted P value
1	GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	0.00E+00
2	GO:0043130: ubiquitin binding	2.01E-06
3	GO:0036402: proteasome-activating ATPase activity	6.35E-05
4	GO:0031593: polyubiquitin binding	6.35E-05
5	GO:0030234: enzyme regulator activity	1.83E-04
6	GO:0004190: aspartic-type endopeptidase activity	2.85E-04
7	GO:0017025: TBP-class protein binding	2.85E-04
8	GO:0000166: nucleotide binding	5.65E-04
9	GO:0004222: metalloendopeptidase activity	9.49E-04
10	GO:0016887: ATPase activity	7.42E-03
11	GO:0003824: catalytic activity	1.43E-02
12	GO:0016491: oxidoreductase activity	1.63E-02
13	GO:0046983: protein dimerization activity	1.65E-02

Rank	GO Term	Adjusted P value
1	GO:0008540: proteasome regulatory particle, base subcomplex	5.03E-07
2	GO:0000502: proteasome complex	3.87E-05
3	GO:0031597: cytosolic proteasome complex	7.81E-05
4	GO:0031595: nuclear proteasome complex	9.36E-05
5	GO:0005750: mitochondrial respiratory chain complex III	2.64E-04
6	GO:0005758: mitochondrial intermembrane space	3.29E-04
7	GO:0005741: mitochondrial outer membrane	3.74E-04
8	GO:0005829: cytosol	4.75E-04
9	GO:0009506: plasmodesma	2.07E-03
10	GO:0005759: mitochondrial matrix	2.53E-03
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.86E-03
12	GO:0005743: mitochondrial inner membrane	5.22E-03
13	GO:0005737: cytoplasm	1.18E-02
14	GO:0016020: membrane	1.22E-02
15	GO:0005730: nucleolus	1.95E-02
16	GO:0005634: nucleus	2.11E-02
17	GO:0005774: vacuolar membrane	3.25E-02
18	GO:0005618: cell wall	3.58E-02