Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G11410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045747: positive regulation of Notch signaling pathway0.00E+00
2GO:0046294: formaldehyde catabolic process0.00E+00
3GO:0016093: polyprenol metabolic process0.00E+00
4GO:0032928: regulation of superoxide anion generation0.00E+00
5GO:0036172: thiamine salvage0.00E+00
6GO:0006721: terpenoid metabolic process0.00E+00
7GO:0009236: cobalamin biosynthetic process0.00E+00
8GO:0006720: isoprenoid metabolic process0.00E+00
9GO:0018293: protein-FAD linkage0.00E+00
10GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
11GO:0032780: negative regulation of ATPase activity0.00E+00
12GO:0016487: farnesol metabolic process0.00E+00
13GO:0006796: phosphate-containing compound metabolic process1.74E-04
14GO:0009117: nucleotide metabolic process1.74E-04
15GO:0015992: proton transport2.04E-04
16GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.36E-04
17GO:0034972: histone H3-R26 methylation3.52E-04
18GO:1902265: abscisic acid homeostasis3.52E-04
19GO:0034971: histone H3-R17 methylation3.52E-04
20GO:0071461: cellular response to redox state3.52E-04
21GO:0048438: floral whorl development3.52E-04
22GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.52E-04
23GO:0019354: siroheme biosynthetic process3.52E-04
24GO:0034970: histone H3-R2 methylation3.52E-04
25GO:0005978: glycogen biosynthetic process3.84E-04
26GO:0009787: regulation of abscisic acid-activated signaling pathway3.84E-04
27GO:0080005: photosystem stoichiometry adjustment7.67E-04
28GO:0019388: galactose catabolic process7.67E-04
29GO:2000030: regulation of response to red or far red light7.67E-04
30GO:0006432: phenylalanyl-tRNA aminoacylation7.67E-04
31GO:2000071: regulation of defense response by callose deposition7.67E-04
32GO:0010220: positive regulation of vernalization response7.67E-04
33GO:0019441: tryptophan catabolic process to kynurenine7.67E-04
34GO:0080183: response to photooxidative stress7.67E-04
35GO:0043100: pyrimidine nucleobase salvage7.67E-04
36GO:0016122: xanthophyll metabolic process7.67E-04
37GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine7.67E-04
38GO:0055114: oxidation-reduction process9.59E-04
39GO:0044210: 'de novo' CTP biosynthetic process1.24E-03
40GO:0006013: mannose metabolic process1.24E-03
41GO:0008652: cellular amino acid biosynthetic process1.24E-03
42GO:1901562: response to paraquat1.24E-03
43GO:0009150: purine ribonucleotide metabolic process1.24E-03
44GO:0071492: cellular response to UV-A1.24E-03
45GO:0006696: ergosterol biosynthetic process1.24E-03
46GO:0006760: folic acid-containing compound metabolic process1.24E-03
47GO:0010476: gibberellin mediated signaling pathway1.24E-03
48GO:0010325: raffinose family oligosaccharide biosynthetic process1.24E-03
49GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.24E-03
50GO:0031022: nuclear migration along microfilament1.24E-03
51GO:0009853: photorespiration1.58E-03
52GO:0009647: skotomorphogenesis1.79E-03
53GO:0009399: nitrogen fixation1.79E-03
54GO:0009963: positive regulation of flavonoid biosynthetic process1.79E-03
55GO:0006516: glycoprotein catabolic process1.79E-03
56GO:0009590: detection of gravity1.79E-03
57GO:2001141: regulation of RNA biosynthetic process1.79E-03
58GO:0009067: aspartate family amino acid biosynthetic process1.79E-03
59GO:0016226: iron-sulfur cluster assembly2.38E-03
60GO:0006221: pyrimidine nucleotide biosynthetic process2.40E-03
61GO:0009649: entrainment of circadian clock2.40E-03
62GO:0009902: chloroplast relocation2.40E-03
63GO:0034613: cellular protein localization2.40E-03
64GO:0006542: glutamine biosynthetic process2.40E-03
65GO:0070534: protein K63-linked ubiquitination2.40E-03
66GO:0071486: cellular response to high light intensity2.40E-03
67GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.40E-03
68GO:0009765: photosynthesis, light harvesting2.40E-03
69GO:0006012: galactose metabolic process2.60E-03
70GO:0010117: photoprotection3.07E-03
71GO:0046283: anthocyanin-containing compound metabolic process3.07E-03
72GO:0010236: plastoquinone biosynthetic process3.07E-03
73GO:0009229: thiamine diphosphate biosynthetic process3.07E-03
74GO:0015991: ATP hydrolysis coupled proton transport3.31E-03
75GO:0051603: proteolysis involved in cellular protein catabolic process3.33E-03
76GO:0006520: cellular amino acid metabolic process3.57E-03
77GO:0031053: primary miRNA processing3.79E-03
78GO:0033365: protein localization to organelle3.79E-03
79GO:0007035: vacuolar acidification3.79E-03
80GO:0009228: thiamine biosynthetic process3.79E-03
81GO:0000060: protein import into nucleus, translocation3.79E-03
82GO:0006121: mitochondrial electron transport, succinate to ubiquinone3.79E-03
83GO:0006301: postreplication repair3.79E-03
84GO:0010304: PSII associated light-harvesting complex II catabolic process3.79E-03
85GO:0016070: RNA metabolic process3.79E-03
86GO:0006555: methionine metabolic process3.79E-03
87GO:0070814: hydrogen sulfide biosynthetic process3.79E-03
88GO:0019252: starch biosynthetic process4.11E-03
89GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.40E-03
90GO:0010076: maintenance of floral meristem identity4.57E-03
91GO:0009903: chloroplast avoidance movement4.57E-03
92GO:0048444: floral organ morphogenesis4.57E-03
93GO:0010077: maintenance of inflorescence meristem identity4.57E-03
94GO:0019509: L-methionine salvage from methylthioadenosine4.57E-03
95GO:0009396: folic acid-containing compound biosynthetic process5.40E-03
96GO:0022904: respiratory electron transport chain5.40E-03
97GO:0050790: regulation of catalytic activity5.40E-03
98GO:0010161: red light signaling pathway5.40E-03
99GO:0030091: protein repair6.27E-03
100GO:0009704: de-etiolation6.27E-03
101GO:0000028: ribosomal small subunit assembly6.27E-03
102GO:0009231: riboflavin biosynthetic process6.27E-03
103GO:0045292: mRNA cis splicing, via spliceosome6.27E-03
104GO:0009058: biosynthetic process7.13E-03
105GO:0019430: removal of superoxide radicals7.19E-03
106GO:0009880: embryonic pattern specification7.19E-03
107GO:0010100: negative regulation of photomorphogenesis7.19E-03
108GO:0032544: plastid translation7.19E-03
109GO:0071482: cellular response to light stimulus7.19E-03
110GO:0015996: chlorophyll catabolic process7.19E-03
111GO:0009056: catabolic process8.16E-03
112GO:0015780: nucleotide-sugar transport8.16E-03
113GO:0098656: anion transmembrane transport8.16E-03
114GO:0009098: leucine biosynthetic process9.17E-03
115GO:0035999: tetrahydrofolate interconversion9.17E-03
116GO:0010043: response to zinc ion9.64E-03
117GO:0009970: cellular response to sulfate starvation1.02E-02
118GO:0000103: sulfate assimilation1.02E-02
119GO:0009688: abscisic acid biosynthetic process1.02E-02
120GO:0009641: shade avoidance1.02E-02
121GO:0006099: tricarboxylic acid cycle1.11E-02
122GO:0009682: induced systemic resistance1.13E-02
123GO:0006879: cellular iron ion homeostasis1.13E-02
124GO:0006352: DNA-templated transcription, initiation1.13E-02
125GO:0048229: gametophyte development1.13E-02
126GO:0006508: proteolysis1.22E-02
127GO:0010582: floral meristem determinacy1.25E-02
128GO:0006790: sulfur compound metabolic process1.25E-02
129GO:0030048: actin filament-based movement1.37E-02
130GO:0009785: blue light signaling pathway1.37E-02
131GO:0006006: glucose metabolic process1.37E-02
132GO:0006829: zinc II ion transport1.37E-02
133GO:0048440: carpel development1.49E-02
134GO:0000162: tryptophan biosynthetic process1.74E-02
135GO:0009585: red, far-red light phototransduction1.85E-02
136GO:2000377: regulation of reactive oxygen species metabolic process1.88E-02
137GO:0006487: protein N-linked glycosylation1.88E-02
138GO:0010224: response to UV-B1.91E-02
139GO:0006970: response to osmotic stress1.92E-02
140GO:0008299: isoprenoid biosynthetic process2.01E-02
141GO:0010431: seed maturation2.15E-02
142GO:0019915: lipid storage2.15E-02
143GO:2000022: regulation of jasmonic acid mediated signaling pathway2.29E-02
144GO:0009693: ethylene biosynthetic process2.44E-02
145GO:0035556: intracellular signal transduction2.62E-02
146GO:0016117: carotenoid biosynthetic process2.74E-02
147GO:0080022: primary root development2.90E-02
148GO:0010051: xylem and phloem pattern formation2.90E-02
149GO:0010118: stomatal movement2.90E-02
150GO:0006662: glycerol ether metabolic process3.06E-02
151GO:0008654: phospholipid biosynthetic process3.39E-02
152GO:0009851: auxin biosynthetic process3.39E-02
153GO:0002229: defense response to oomycetes3.55E-02
154GO:0019761: glucosinolate biosynthetic process3.72E-02
155GO:0006281: DNA repair3.73E-02
156GO:0030163: protein catabolic process3.90E-02
157GO:0010090: trichome morphogenesis3.90E-02
158GO:0006464: cellular protein modification process4.07E-02
159GO:0008152: metabolic process4.21E-02
160GO:0016126: sterol biosynthetic process4.62E-02
161GO:0010029: regulation of seed germination4.80E-02
162GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.80E-02
163GO:0005975: carbohydrate metabolic process4.84E-02
164GO:0042128: nitrate assimilation4.99E-02
RankGO TermAdjusted P value
1GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
2GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
3GO:0052671: geranylgeraniol kinase activity0.00E+00
4GO:0018738: S-formylglutathione hydrolase activity0.00E+00
5GO:0015205: nucleobase transmembrane transporter activity0.00E+00
6GO:0051266: sirohydrochlorin ferrochelatase activity0.00E+00
7GO:0047710: bis(5'-adenosyl)-triphosphatase activity0.00E+00
8GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0047886: farnesol dehydrogenase activity0.00E+00
11GO:0016852: sirohydrochlorin cobaltochelatase activity0.00E+00
12GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
13GO:0042030: ATPase inhibitor activity0.00E+00
14GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
15GO:0052670: geraniol kinase activity0.00E+00
16GO:0052668: farnesol kinase activity0.00E+00
17GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
18GO:0043530: adenosine 5'-monophosphoramidase activity0.00E+00
19GO:0008106: alcohol dehydrogenase (NADP+) activity4.34E-05
20GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity4.34E-05
21GO:0047627: adenylylsulfatase activity4.34E-05
22GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.74E-04
23GO:0004427: inorganic diphosphatase activity3.06E-04
24GO:0016783: sulfurtransferase activity3.52E-04
25GO:0019707: protein-cysteine S-acyltransferase activity3.52E-04
26GO:0051996: squalene synthase activity3.52E-04
27GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity3.52E-04
28GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.52E-04
29GO:0033984: indole-3-glycerol-phosphate lyase activity3.52E-04
30GO:0004560: alpha-L-fucosidase activity3.52E-04
31GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity3.52E-04
32GO:0004034: aldose 1-epimerase activity3.84E-04
33GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity7.67E-04
34GO:0004061: arylformamidase activity7.67E-04
35GO:0019172: glyoxalase III activity7.67E-04
36GO:0004614: phosphoglucomutase activity7.67E-04
37GO:0004826: phenylalanine-tRNA ligase activity7.67E-04
38GO:0004412: homoserine dehydrogenase activity7.67E-04
39GO:0004046: aminoacylase activity7.67E-04
40GO:0035241: protein-arginine omega-N monomethyltransferase activity7.67E-04
41GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.67E-04
42GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity7.67E-04
43GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity7.67E-04
44GO:0010331: gibberellin binding7.67E-04
45GO:0016868: intramolecular transferase activity, phosphotransferases7.67E-04
46GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.67E-04
47GO:0050347: trans-octaprenyltranstransferase activity7.67E-04
48GO:0003824: catalytic activity1.07E-03
49GO:0004848: ureidoglycolate hydrolase activity1.24E-03
50GO:0003861: 3-isopropylmalate dehydratase activity1.24E-03
51GO:0003935: GTP cyclohydrolase II activity1.24E-03
52GO:0004781: sulfate adenylyltransferase (ATP) activity1.24E-03
53GO:0008469: histone-arginine N-methyltransferase activity1.24E-03
54GO:0004180: carboxypeptidase activity1.24E-03
55GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.24E-03
56GO:0035529: NADH pyrophosphatase activity1.79E-03
57GO:0004792: thiosulfate sulfurtransferase activity1.79E-03
58GO:0003883: CTP synthase activity1.79E-03
59GO:0016656: monodehydroascorbate reductase (NADH) activity1.79E-03
60GO:0000339: RNA cap binding1.79E-03
61GO:0000254: C-4 methylsterol oxidase activity1.79E-03
62GO:0051536: iron-sulfur cluster binding1.80E-03
63GO:0051539: 4 iron, 4 sulfur cluster binding1.86E-03
64GO:0004185: serine-type carboxypeptidase activity2.18E-03
65GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.40E-03
66GO:0008878: glucose-1-phosphate adenylyltransferase activity2.40E-03
67GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.40E-03
68GO:0001053: plastid sigma factor activity2.40E-03
69GO:0004834: tryptophan synthase activity2.40E-03
70GO:0016987: sigma factor activity2.40E-03
71GO:0008177: succinate dehydrogenase (ubiquinone) activity3.07E-03
72GO:0016651: oxidoreductase activity, acting on NAD(P)H3.07E-03
73GO:0005496: steroid binding3.07E-03
74GO:0004356: glutamate-ammonia ligase activity3.07E-03
75GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity3.79E-03
76GO:0016462: pyrophosphatase activity3.79E-03
77GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity3.79E-03
78GO:0004784: superoxide dismutase activity3.79E-03
79GO:0004605: phosphatidate cytidylyltransferase activity3.79E-03
80GO:0050662: coenzyme binding3.83E-03
81GO:0016853: isomerase activity3.83E-03
82GO:0008137: NADH dehydrogenase (ubiquinone) activity4.40E-03
83GO:0070300: phosphatidic acid binding4.57E-03
84GO:0004559: alpha-mannosidase activity4.57E-03
85GO:0008320: protein transmembrane transporter activity5.40E-03
86GO:0005338: nucleotide-sugar transmembrane transporter activity5.40E-03
87GO:0016621: cinnamoyl-CoA reductase activity5.40E-03
88GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity6.27E-03
89GO:0015078: hydrogen ion transmembrane transporter activity7.19E-03
90GO:0008236: serine-type peptidase activity7.91E-03
91GO:0071949: FAD binding8.16E-03
92GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.16E-03
93GO:0046961: proton-transporting ATPase activity, rotational mechanism1.13E-02
94GO:0000049: tRNA binding1.25E-02
95GO:0015266: protein channel activity1.37E-02
96GO:0005315: inorganic phosphate transmembrane transporter activity1.37E-02
97GO:0031072: heat shock protein binding1.37E-02
98GO:0016787: hydrolase activity1.40E-02
99GO:0016491: oxidoreductase activity1.41E-02
100GO:0000287: magnesium ion binding1.71E-02
101GO:0008234: cysteine-type peptidase activity2.05E-02
102GO:0004176: ATP-dependent peptidase activity2.15E-02
103GO:0022857: transmembrane transporter activity2.48E-02
104GO:0008514: organic anion transmembrane transporter activity2.59E-02
105GO:0047134: protein-disulfide reductase activity2.74E-02
106GO:0004386: helicase activity2.87E-02
107GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.06E-02
108GO:0046873: metal ion transmembrane transporter activity3.06E-02
109GO:0004791: thioredoxin-disulfide reductase activity3.22E-02
110GO:0048038: quinone binding3.55E-02
111GO:0030170: pyridoxal phosphate binding3.65E-02
112GO:0004197: cysteine-type endopeptidase activity3.72E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.90E-02
114GO:0008483: transaminase activity4.25E-02
115GO:0008237: metallopeptidase activity4.25E-02
116GO:0016597: amino acid binding4.43E-02
117GO:0016413: O-acetyltransferase activity4.43E-02
118GO:0016168: chlorophyll binding4.80E-02
119GO:0008375: acetylglucosaminyltransferase activity4.99E-02
120GO:0009931: calcium-dependent protein serine/threonine kinase activity4.99E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0009507: chloroplast1.02E-11
3GO:0005747: mitochondrial respiratory chain complex I6.09E-07
4GO:0005773: vacuole2.00E-05
5GO:0009536: plastid1.25E-04
6GO:0031969: chloroplast membrane2.97E-04
7GO:0000152: nuclear ubiquitin ligase complex3.52E-04
8GO:0005845: mRNA cap binding complex3.52E-04
9GO:0005846: nuclear cap binding complex7.67E-04
10GO:0009570: chloroplast stroma1.18E-03
11GO:0005764: lysosome1.30E-03
12GO:0042646: plastid nucleoid1.79E-03
13GO:0045271: respiratory chain complex I1.98E-03
14GO:0009526: plastid envelope2.40E-03
15GO:0009517: PSII associated light-harvesting complex II2.40E-03
16GO:0033179: proton-transporting V-type ATPase, V0 domain2.40E-03
17GO:0016471: vacuolar proton-transporting V-type ATPase complex2.40E-03
18GO:0009527: plastid outer membrane2.40E-03
19GO:0031372: UBC13-MMS2 complex2.40E-03
20GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain3.07E-03
21GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.79E-03
22GO:0032588: trans-Golgi network membrane3.79E-03
23GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane5.40E-03
24GO:0010319: stromule5.67E-03
25GO:0009535: chloroplast thylakoid membrane5.85E-03
26GO:0010287: plastoglobule6.22E-03
27GO:0009501: amyloplast6.27E-03
28GO:0045273: respiratory chain complex II6.27E-03
29GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)6.27E-03
30GO:0005783: endoplasmic reticulum7.66E-03
31GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.16E-03
32GO:0042644: chloroplast nucleoid8.16E-03
33GO:0005763: mitochondrial small ribosomal subunit8.16E-03
34GO:0005829: cytosol8.98E-03
35GO:0016604: nuclear body9.17E-03
36GO:0005765: lysosomal membrane1.13E-02
37GO:0005774: vacuolar membrane1.60E-02
38GO:0005753: mitochondrial proton-transporting ATP synthase complex1.61E-02
39GO:0031966: mitochondrial membrane1.72E-02
40GO:0005758: mitochondrial intermembrane space1.88E-02
41GO:0005789: endoplasmic reticulum membrane1.88E-02
42GO:0005744: mitochondrial inner membrane presequence translocase complex2.59E-02
43GO:0005777: peroxisome2.96E-02
44GO:0009941: chloroplast envelope3.16E-02
45GO:0009523: photosystem II3.39E-02
46GO:0032580: Golgi cisterna membrane4.07E-02
47GO:0005759: mitochondrial matrix4.13E-02
48GO:0009295: nucleoid4.25E-02
49GO:0005778: peroxisomal membrane4.25E-02
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Gene type



Gene DE type