co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G10760

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:0090069: regulation of ribosome biogenesis	0.00E+00
3	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
5	GO:0051050: positive regulation of transport	0.00E+00
6	GO:0001732: formation of cytoplasmic translation initiation complex	0.00E+00
7	GO:0002188: translation reinitiation	0.00E+00
8	GO:0048867: stem cell fate determination	0.00E+00
9	GO:0006364: rRNA processing	8.30E-15
10	GO:0010501: RNA secondary structure unwinding	1.56E-08
11	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.45E-07
12	GO:0006413: translational initiation	7.51E-07
13	GO:0007005: mitochondrion organization	2.51E-05
14	GO:0042254: ribosome biogenesis	5.05E-05
15	GO:0009553: embryo sac development	7.43E-05
16	GO:2000024: regulation of leaf development	1.22E-04
17	GO:0030490: maturation of SSU-rRNA	1.23E-04
18	GO:2000232: regulation of rRNA processing	1.23E-04
19	GO:0043985: histone H4-R3 methylation	1.23E-04
20	GO:1901181: negative regulation of cellular response to caffeine	1.23E-04
21	GO:0000469: cleavage involved in rRNA processing	1.23E-04
22	GO:0043609: regulation of carbon utilization	1.23E-04
23	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.23E-04
24	GO:0006430: lysyl-tRNA aminoacylation	1.23E-04
25	GO:0010162: seed dormancy process	1.75E-04
26	GO:0051262: protein tetramerization	2.86E-04
27	GO:0034470: ncRNA processing	2.86E-04
28	GO:0006610: ribosomal protein import into nucleus	2.86E-04
29	GO:0031538: negative regulation of anthocyanin metabolic process	2.86E-04
30	GO:0045041: protein import into mitochondrial intermembrane space	2.86E-04
31	GO:0009944: polarity specification of adaxial/abaxial axis	4.26E-04
32	GO:0045604: regulation of epidermal cell differentiation	4.72E-04
33	GO:0006556: S-adenosylmethionine biosynthetic process	4.72E-04
34	GO:0009294: DNA mediated transformation	6.14E-04
35	GO:0007276: gamete generation	6.76E-04
36	GO:0071329: cellular response to sucrose stimulus	6.76E-04
37	GO:0051131: chaperone-mediated protein complex assembly	6.76E-04
38	GO:0043967: histone H4 acetylation	6.76E-04
39	GO:0032465: regulation of cytokinesis	6.76E-04
40	GO:0046345: abscisic acid catabolic process	8.97E-04
41	GO:0042273: ribosomal large subunit biogenesis	8.97E-04
42	GO:0000460: maturation of 5.8S rRNA	8.97E-04
43	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	8.97E-04
44	GO:0000470: maturation of LSU-rRNA	1.39E-03
45	GO:0043248: proteasome assembly	1.39E-03
46	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.39E-03
47	GO:0000060: protein import into nucleus, translocation	1.39E-03
48	GO:0010077: maintenance of inflorescence meristem identity	1.66E-03
49	GO:0015977: carbon fixation	1.66E-03
50	GO:0042026: protein refolding	1.66E-03
51	GO:0043966: histone H3 acetylation	1.66E-03
52	GO:0006458: 'de novo' protein folding	1.66E-03
53	GO:0048444: floral organ morphogenesis	1.66E-03
54	GO:0006368: transcription elongation from RNA polymerase II promoter	1.95E-03
55	GO:0045995: regulation of embryonic development	1.95E-03
56	GO:0010928: regulation of auxin mediated signaling pathway	2.26E-03
57	GO:0035265: organ growth	2.26E-03
58	GO:0006875: cellular metal ion homeostasis	2.26E-03
59	GO:0000028: ribosomal small subunit assembly	2.26E-03
60	GO:0009880: embryonic pattern specification	2.58E-03
61	GO:0006607: NLS-bearing protein import into nucleus	2.91E-03
62	GO:0000373: Group II intron splicing	2.91E-03
63	GO:0046686: response to cadmium ion	3.85E-03
64	GO:0008285: negative regulation of cell proliferation	4.00E-03
65	GO:0006352: DNA-templated transcription, initiation	4.00E-03
66	GO:0045892: negative regulation of transcription, DNA-templated	4.38E-03
67	GO:0010582: floral meristem determinacy	4.39E-03
68	GO:0010152: pollen maturation	4.39E-03
69	GO:0006417: regulation of translation	4.54E-03
70	GO:0010030: positive regulation of seed germination	5.63E-03
71	GO:0051302: regulation of cell division	6.98E-03
72	GO:0006874: cellular calcium ion homeostasis	6.98E-03
73	GO:0010073: meristem maintenance	6.98E-03
74	GO:0061077: chaperone-mediated protein folding	7.45E-03
75	GO:0006730: one-carbon metabolic process	7.93E-03
76	GO:0009693: ethylene biosynthetic process	8.43E-03
77	GO:0009790: embryo development	8.52E-03
78	GO:0009561: megagametogenesis	8.93E-03
79	GO:0016036: cellular response to phosphate starvation	9.39E-03
80	GO:0008284: positive regulation of cell proliferation	9.45E-03
81	GO:0006606: protein import into nucleus	9.99E-03
82	GO:0009451: RNA modification	1.03E-02
83	GO:0048825: cotyledon development	1.16E-02
84	GO:0007264: small GTPase mediated signal transduction	1.28E-02
85	GO:0030163: protein catabolic process	1.34E-02
86	GO:0071281: cellular response to iron ion	1.34E-02
87	GO:0009651: response to salt stress	1.46E-02
88	GO:0016126: sterol biosynthetic process	1.58E-02
89	GO:0006888: ER to Golgi vesicle-mediated transport	1.78E-02
90	GO:0016049: cell growth	1.85E-02
91	GO:0048527: lateral root development	2.12E-02
92	GO:0006099: tricarboxylic acid cycle	2.34E-02
93	GO:0006839: mitochondrial transport	2.48E-02
94	GO:0009640: photomorphogenesis	2.71E-02
95	GO:0008283: cell proliferation	2.71E-02
96	GO:0032259: methylation	2.75E-02
97	GO:0000154: rRNA modification	2.95E-02
98	GO:0006412: translation	3.07E-02
99	GO:0009846: pollen germination	3.19E-02
100	GO:0006096: glycolytic process	3.78E-02
101	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.79E-02
102	GO:0016569: covalent chromatin modification	4.13E-02
103	GO:0006396: RNA processing	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0004421: hydroxymethylglutaryl-CoA synthase activity	0.00E+00
4	GO:0003723: RNA binding	7.78E-17
5	GO:0008026: ATP-dependent helicase activity	7.37E-14
6	GO:0000166: nucleotide binding	3.20E-13
7	GO:0030515: snoRNA binding	2.59E-09
8	GO:0004004: ATP-dependent RNA helicase activity	2.96E-09
9	GO:0043021: ribonucleoprotein complex binding	7.73E-07
10	GO:0003743: translation initiation factor activity	1.50E-06
11	GO:0001054: RNA polymerase I activity	4.39E-06
12	GO:0003729: mRNA binding	3.93E-05
13	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.03E-05
14	GO:0004824: lysine-tRNA ligase activity	1.23E-04
15	GO:0030371: translation repressor activity	1.23E-04
16	GO:0042134: rRNA primary transcript binding	1.23E-04
17	GO:0044183: protein binding involved in protein folding	2.05E-04
18	GO:0004407: histone deacetylase activity	4.26E-04
19	GO:0019829: cation-transporting ATPase activity	4.72E-04
20	GO:0070181: small ribosomal subunit rRNA binding	4.72E-04
21	GO:0008964: phosphoenolpyruvate carboxylase activity	4.72E-04
22	GO:0004478: methionine adenosyltransferase activity	4.72E-04
23	GO:0005524: ATP binding	7.13E-04
24	GO:0003713: transcription coactivator activity	8.35E-04
25	GO:0000993: RNA polymerase II core binding	8.97E-04
26	GO:0031369: translation initiation factor binding	1.39E-03
27	GO:0004743: pyruvate kinase activity	3.26E-03
28	GO:0030955: potassium ion binding	3.26E-03
29	GO:0004521: endoribonuclease activity	4.39E-03
30	GO:0001056: RNA polymerase III activity	4.39E-03
31	GO:0009982: pseudouridine synthase activity	4.79E-03
32	GO:0015114: phosphate ion transmembrane transporter activity	4.79E-03
33	GO:0005388: calcium-transporting ATPase activity	4.79E-03
34	GO:0008139: nuclear localization sequence binding	4.79E-03
35	GO:0003924: GTPase activity	5.60E-03
36	GO:0051082: unfolded protein binding	5.83E-03
37	GO:0004402: histone acetyltransferase activity	9.99E-03
38	GO:0008536: Ran GTPase binding	1.05E-02
39	GO:0004527: exonuclease activity	1.05E-02
40	GO:0008168: methyltransferase activity	1.51E-02
41	GO:0005515: protein binding	1.80E-02
42	GO:0005525: GTP binding	2.18E-02
43	GO:0003746: translation elongation factor activity	2.26E-02
44	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.34E-02
45	GO:0005198: structural molecule activity	2.95E-02
46	GO:0004519: endonuclease activity	3.12E-02
47	GO:0004386: helicase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0070545: PeBoW complex	0.00E+00
2	GO:0034457: Mpp10 complex	0.00E+00
3	GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e	0.00E+00
4	GO:0034455: t-UTP complex	0.00E+00
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
6	GO:0005730: nucleolus	9.32E-32
7	GO:0032040: small-subunit processome	2.42E-12
8	GO:0005634: nucleus	1.30E-09
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.09E-08
10	GO:0030687: preribosome, large subunit precursor	5.66E-07
11	GO:0005736: DNA-directed RNA polymerase I complex	1.83E-06
12	GO:0005852: eukaryotic translation initiation factor 3 complex	4.39E-06
13	GO:0005829: cytosol	1.55E-05
14	GO:0005834: heterotrimeric G-protein complex	6.26E-05
15	GO:0034399: nuclear periphery	7.88E-05
16	GO:0043614: multi-eIF complex	1.23E-04
17	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	1.23E-04
18	GO:0008023: transcription elongation factor complex	1.23E-04
19	GO:0030688: preribosome, small subunit precursor	1.23E-04
20	GO:0031307: integral component of mitochondrial outer membrane	2.37E-04
21	GO:0005618: cell wall	6.05E-04
22	GO:0033588: Elongator holoenzyme complex	6.76E-04
23	GO:0005654: nucleoplasm	9.73E-04
24	GO:0031428: box C/D snoRNP complex	1.39E-03
25	GO:0030127: COPII vesicle coat	1.39E-03
26	GO:0016363: nuclear matrix	1.66E-03
27	GO:0031597: cytosolic proteasome complex	1.66E-03
28	GO:0000123: histone acetyltransferase complex	1.95E-03
29	GO:0008180: COP9 signalosome	2.91E-03
30	GO:0005763: mitochondrial small ribosomal subunit	2.91E-03
31	GO:0015030: Cajal body	3.26E-03
32	GO:0005666: DNA-directed RNA polymerase III complex	3.26E-03
33	GO:0008541: proteasome regulatory particle, lid subcomplex	4.00E-03
34	GO:0009506: plasmodesma	4.04E-03
35	GO:0019013: viral nucleocapsid	4.79E-03
36	GO:0005774: vacuolar membrane	4.86E-03
37	GO:0043234: protein complex	6.06E-03
38	GO:0015935: small ribosomal subunit	7.45E-03
39	GO:0005759: mitochondrial matrix	9.17E-03
40	GO:0031965: nuclear membrane	1.16E-02
41	GO:0019898: extrinsic component of membrane	1.16E-02
42	GO:0030529: intracellular ribonucleoprotein complex	1.58E-02
43	GO:0005643: nuclear pore	1.91E-02
44	GO:0015934: large ribosomal subunit	2.12E-02
45	GO:0005743: mitochondrial inner membrane	2.67E-02
46	GO:0000502: proteasome complex	3.35E-02
47	GO:0005747: mitochondrial respiratory chain complex I	3.86E-02
48	GO:0005732: small nucleolar ribonucleoprotein complex	4.58E-02