Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G10610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0030149: sphingolipid catabolic process0.00E+00
3GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
4GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
5GO:0001881: receptor recycling0.00E+00
6GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
7GO:1902325: negative regulation of chlorophyll biosynthetic process0.00E+00
8GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
9GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
10GO:0009264: deoxyribonucleotide catabolic process0.00E+00
11GO:0006412: translation2.09E-07
12GO:0006820: anion transport2.13E-05
13GO:0042254: ribosome biogenesis3.43E-05
14GO:0042744: hydrogen peroxide catabolic process7.00E-05
15GO:0009651: response to salt stress8.70E-05
16GO:0006869: lipid transport1.11E-04
17GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.88E-04
18GO:1901349: glucosinolate transport2.18E-04
19GO:1901430: positive regulation of syringal lignin biosynthetic process2.18E-04
20GO:0090449: phloem glucosinolate loading2.18E-04
21GO:0042964: thioredoxin reduction2.18E-04
22GO:0006106: fumarate metabolic process2.18E-04
23GO:1990542: mitochondrial transmembrane transport2.18E-04
24GO:0009820: alkaloid metabolic process2.18E-04
25GO:0010365: positive regulation of ethylene biosynthetic process2.18E-04
26GO:0009058: biosynthetic process4.80E-04
27GO:0051788: response to misfolded protein4.86E-04
28GO:0015786: UDP-glucose transport4.86E-04
29GO:0019752: carboxylic acid metabolic process4.86E-04
30GO:0045905: positive regulation of translational termination4.86E-04
31GO:0043132: NAD transport4.86E-04
32GO:0045901: positive regulation of translational elongation4.86E-04
33GO:0006123: mitochondrial electron transport, cytochrome c to oxygen4.86E-04
34GO:0006452: translational frameshifting4.86E-04
35GO:0006626: protein targeting to mitochondrion5.92E-04
36GO:0006954: inflammatory response7.90E-04
37GO:0008333: endosome to lysosome transport7.90E-04
38GO:0008652: cellular amino acid biosynthetic process7.90E-04
39GO:0044375: regulation of peroxisome size7.90E-04
40GO:0015783: GDP-fucose transport7.90E-04
41GO:0006511: ubiquitin-dependent protein catabolic process9.37E-04
42GO:0048511: rhythmic process1.10E-03
43GO:0009647: skotomorphogenesis1.13E-03
44GO:0015858: nucleoside transport1.13E-03
45GO:0071786: endoplasmic reticulum tubular network organization1.13E-03
46GO:0001676: long-chain fatty acid metabolic process1.13E-03
47GO:0046513: ceramide biosynthetic process1.13E-03
48GO:0046836: glycolipid transport1.13E-03
49GO:0009413: response to flooding1.13E-03
50GO:0072334: UDP-galactose transmembrane transport1.13E-03
51GO:0051603: proteolysis involved in cellular protein catabolic process1.37E-03
52GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter1.50E-03
53GO:0051365: cellular response to potassium ion starvation1.50E-03
54GO:0010363: regulation of plant-type hypersensitive response1.50E-03
55GO:0009735: response to cytokinin1.79E-03
56GO:0010117: photoprotection1.91E-03
57GO:0006564: L-serine biosynthetic process1.91E-03
58GO:0097428: protein maturation by iron-sulfur cluster transfer1.91E-03
59GO:1902183: regulation of shoot apical meristem development1.91E-03
60GO:0045116: protein neddylation1.91E-03
61GO:0006979: response to oxidative stress2.09E-03
62GO:0009228: thiamine biosynthetic process2.35E-03
63GO:0001731: formation of translation preinitiation complex2.35E-03
64GO:0043248: proteasome assembly2.35E-03
65GO:0009554: megasporogenesis2.83E-03
66GO:0010019: chloroplast-nucleus signaling pathway2.83E-03
67GO:0009648: photoperiodism2.83E-03
68GO:1901001: negative regulation of response to salt stress2.83E-03
69GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.83E-03
70GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.33E-03
71GO:0050829: defense response to Gram-negative bacterium3.33E-03
72GO:0048528: post-embryonic root development3.33E-03
73GO:1900056: negative regulation of leaf senescence3.33E-03
74GO:0006413: translational initiation3.75E-03
75GO:0009642: response to light intensity3.86E-03
76GO:0031540: regulation of anthocyanin biosynthetic process3.86E-03
77GO:0006102: isocitrate metabolic process3.86E-03
78GO:0009753: response to jasmonic acid3.90E-03
79GO:0019430: removal of superoxide radicals4.42E-03
80GO:0006367: transcription initiation from RNA polymerase II promoter4.42E-03
81GO:0010204: defense response signaling pathway, resistance gene-independent4.42E-03
82GO:0006972: hyperosmotic response4.42E-03
83GO:0006811: ion transport4.55E-03
84GO:0010043: response to zinc ion4.76E-03
85GO:0046686: response to cadmium ion4.93E-03
86GO:0010206: photosystem II repair5.00E-03
87GO:0015780: nucleotide-sugar transport5.00E-03
88GO:0098656: anion transmembrane transport5.00E-03
89GO:0009617: response to bacterium5.13E-03
90GO:0006099: tricarboxylic acid cycle5.46E-03
91GO:0042761: very long-chain fatty acid biosynthetic process5.62E-03
92GO:0006839: mitochondrial transport5.95E-03
93GO:0009870: defense response signaling pathway, resistance gene-dependent6.25E-03
94GO:0006032: chitin catabolic process6.25E-03
95GO:0006913: nucleocytoplasmic transport6.91E-03
96GO:0009682: induced systemic resistance6.91E-03
97GO:0072593: reactive oxygen species metabolic process6.91E-03
98GO:0000272: polysaccharide catabolic process6.91E-03
99GO:0008361: regulation of cell size7.60E-03
100GO:0006807: nitrogen compound metabolic process8.30E-03
101GO:0006108: malate metabolic process8.30E-03
102GO:0009846: pollen germination8.45E-03
103GO:0007034: vacuolar transport9.03E-03
104GO:0006446: regulation of translational initiation9.03E-03
105GO:0010167: response to nitrate9.79E-03
106GO:0042343: indole glucosinolate metabolic process9.79E-03
107GO:0034976: response to endoplasmic reticulum stress1.06E-02
108GO:0000162: tryptophan biosynthetic process1.06E-02
109GO:0009793: embryo development ending in seed dormancy1.07E-02
110GO:0030150: protein import into mitochondrial matrix1.14E-02
111GO:0006289: nucleotide-excision repair1.14E-02
112GO:0055085: transmembrane transport1.20E-02
113GO:0016998: cell wall macromolecule catabolic process1.30E-02
114GO:0015992: proton transport1.30E-02
115GO:0098542: defense response to other organism1.30E-02
116GO:0061077: chaperone-mediated protein folding1.30E-02
117GO:0007005: mitochondrion organization1.39E-02
118GO:0071456: cellular response to hypoxia1.39E-02
119GO:0030245: cellulose catabolic process1.39E-02
120GO:0010017: red or far-red light signaling pathway1.39E-02
121GO:0009751: response to salicylic acid1.52E-02
122GO:0006817: phosphate ion transport1.57E-02
123GO:0009561: megagametogenesis1.57E-02
124GO:0010089: xylem development1.57E-02
125GO:0010584: pollen exine formation1.57E-02
126GO:0055114: oxidation-reduction process1.58E-02
127GO:0042147: retrograde transport, endosome to Golgi1.66E-02
128GO:0050832: defense response to fungus1.72E-02
129GO:0010118: stomatal movement1.75E-02
130GO:0042631: cellular response to water deprivation1.75E-02
131GO:0006520: cellular amino acid metabolic process1.85E-02
132GO:0048868: pollen tube development1.85E-02
133GO:0006623: protein targeting to vacuole2.05E-02
134GO:0010183: pollen tube guidance2.05E-02
135GO:0048825: cotyledon development2.05E-02
136GO:0010193: response to ozone2.15E-02
137GO:0000302: response to reactive oxygen species2.15E-02
138GO:0030163: protein catabolic process2.36E-02
139GO:0006914: autophagy2.46E-02
140GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.51E-02
141GO:0009739: response to gibberellin2.51E-02
142GO:0016049: cell growth3.25E-02
143GO:0009611: response to wounding3.26E-02
144GO:0009407: toxin catabolic process3.62E-02
145GO:0045087: innate immune response3.99E-02
146GO:0009853: photorespiration3.99E-02
147GO:0009723: response to ethylene4.01E-02
148GO:0048366: leaf development4.08E-02
149GO:0006810: transport4.22E-02
150GO:0006631: fatty acid metabolic process4.51E-02
151GO:0016192: vesicle-mediated transport4.52E-02
152GO:0044550: secondary metabolite biosynthetic process4.66E-02
153GO:0008283: cell proliferation4.78E-02
154GO:0051707: response to other organism4.78E-02
RankGO TermAdjusted P value
1GO:0044610: FMN transmembrane transporter activity0.00E+00
2GO:0003796: lysozyme activity0.00E+00
3GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
4GO:0016881: acid-amino acid ligase activity0.00E+00
5GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
6GO:0003735: structural constituent of ribosome2.77E-10
7GO:0004298: threonine-type endopeptidase activity4.03E-08
8GO:0015288: porin activity3.56E-06
9GO:0008308: voltage-gated anion channel activity5.18E-06
10GO:0008233: peptidase activity5.46E-05
11GO:0005347: ATP transmembrane transporter activity1.11E-04
12GO:0004656: procollagen-proline 4-dioxygenase activity1.11E-04
13GO:0004048: anthranilate phosphoribosyltransferase activity2.18E-04
14GO:0047326: inositol tetrakisphosphate 5-kinase activity2.18E-04
15GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.18E-04
16GO:0015230: FAD transmembrane transporter activity2.18E-04
17GO:0090448: glucosinolate:proton symporter activity2.18E-04
18GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.18E-04
19GO:0004333: fumarate hydratase activity2.18E-04
20GO:0046906: tetrapyrrole binding2.18E-04
21GO:0000824: inositol tetrakisphosphate 3-kinase activity2.18E-04
22GO:0004601: peroxidase activity2.55E-04
23GO:0008289: lipid binding3.07E-04
24GO:0020037: heme binding4.62E-04
25GO:0019172: glyoxalase III activity4.86E-04
26GO:0008517: folic acid transporter activity4.86E-04
27GO:0015228: coenzyme A transmembrane transporter activity4.86E-04
28GO:0050291: sphingosine N-acyltransferase activity4.86E-04
29GO:0019781: NEDD8 activating enzyme activity4.86E-04
30GO:0004617: phosphoglycerate dehydrogenase activity4.86E-04
31GO:0004750: ribulose-phosphate 3-epimerase activity4.86E-04
32GO:0051724: NAD transporter activity4.86E-04
33GO:0008253: 5'-nucleotidase activity7.90E-04
34GO:0005457: GDP-fucose transmembrane transporter activity7.90E-04
35GO:0031418: L-ascorbic acid binding9.15E-04
36GO:0004449: isocitrate dehydrogenase (NAD+) activity1.13E-03
37GO:0005460: UDP-glucose transmembrane transporter activity1.13E-03
38GO:0017077: oxidative phosphorylation uncoupler activity1.13E-03
39GO:0017089: glycolipid transporter activity1.13E-03
40GO:0019201: nucleotide kinase activity1.13E-03
41GO:0070628: proteasome binding1.50E-03
42GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.50E-03
43GO:0008022: protein C-terminus binding1.50E-03
44GO:0051861: glycolipid binding1.50E-03
45GO:0080122: AMP transmembrane transporter activity1.91E-03
46GO:0005459: UDP-galactose transmembrane transporter activity1.91E-03
47GO:0008641: small protein activating enzyme activity1.91E-03
48GO:0031593: polyubiquitin binding2.35E-03
49GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.35E-03
50GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.35E-03
51GO:0008200: ion channel inhibitor activity2.35E-03
52GO:0004017: adenylate kinase activity2.83E-03
53GO:0102391: decanoate--CoA ligase activity2.83E-03
54GO:0015217: ADP transmembrane transporter activity2.83E-03
55GO:0004467: long-chain fatty acid-CoA ligase activity3.33E-03
56GO:0016831: carboxy-lyase activity3.33E-03
57GO:0005338: nucleotide-sugar transmembrane transporter activity3.33E-03
58GO:0043022: ribosome binding3.86E-03
59GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.12E-03
60GO:0008135: translation factor activity, RNA binding4.42E-03
61GO:0003743: translation initiation factor activity5.00E-03
62GO:0003746: translation elongation factor activity5.22E-03
63GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.22E-03
64GO:0045309: protein phosphorylated amino acid binding5.62E-03
65GO:0016844: strictosidine synthase activity5.62E-03
66GO:0004568: chitinase activity6.25E-03
67GO:0019904: protein domain specific binding6.91E-03
68GO:0008559: xenobiotic-transporting ATPase activity6.91E-03
69GO:0051287: NAD binding8.15E-03
70GO:0015266: protein channel activity8.30E-03
71GO:0004867: serine-type endopeptidase inhibitor activity9.79E-03
72GO:0008134: transcription factor binding1.14E-02
73GO:0043130: ubiquitin binding1.14E-02
74GO:0005528: FK506 binding1.14E-02
75GO:0003729: mRNA binding1.44E-02
76GO:0008810: cellulase activity1.48E-02
77GO:0003756: protein disulfide isomerase activity1.57E-02
78GO:0008514: organic anion transmembrane transporter activity1.57E-02
79GO:0030170: pyridoxal phosphate binding1.80E-02
80GO:0005199: structural constituent of cell wall1.85E-02
81GO:0004791: thioredoxin-disulfide reductase activity1.95E-02
82GO:0005506: iron ion binding2.36E-02
83GO:0003684: damaged DNA binding2.46E-02
84GO:0016597: amino acid binding2.68E-02
85GO:0046872: metal ion binding2.68E-02
86GO:0004721: phosphoprotein phosphatase activity3.14E-02
87GO:0005515: protein binding3.14E-02
88GO:0030145: manganese ion binding3.74E-02
89GO:0008422: beta-glucosidase activity4.25E-02
90GO:0004364: glutathione transferase activity4.65E-02
91GO:0005507: copper ion binding4.89E-02
RankGO TermAdjusted P value
1GO:0005774: vacuolar membrane2.09E-13
2GO:0009506: plasmodesma2.04E-11
3GO:0000502: proteasome complex2.09E-11
4GO:0022626: cytosolic ribosome4.00E-11
5GO:0005829: cytosol3.99E-10
6GO:0022625: cytosolic large ribosomal subunit1.81E-09
7GO:0005840: ribosome5.07E-09
8GO:0005839: proteasome core complex4.03E-08
9GO:0005618: cell wall2.35E-07
10GO:0022627: cytosolic small ribosomal subunit1.65E-06
11GO:0046930: pore complex5.18E-06
12GO:0005783: endoplasmic reticulum6.89E-06
13GO:0046861: glyoxysomal membrane8.14E-06
14GO:0005741: mitochondrial outer membrane7.43E-05
15GO:0005773: vacuole1.31E-04
16GO:0009510: plasmodesmatal desmotubule2.18E-04
17GO:0045239: tricarboxylic acid cycle enzyme complex2.18E-04
18GO:0009514: glyoxysome2.33E-04
19GO:0019773: proteasome core complex, alpha-subunit complex2.33E-04
20GO:0005743: mitochondrial inner membrane6.77E-04
21GO:0016020: membrane8.61E-04
22GO:0005758: mitochondrial intermembrane space9.15E-04
23GO:0071782: endoplasmic reticulum tubular network1.13E-03
24GO:0009526: plastid envelope1.50E-03
25GO:0016471: vacuolar proton-transporting V-type ATPase complex1.50E-03
26GO:0016282: eukaryotic 43S preinitiation complex2.35E-03
27GO:0000974: Prp19 complex2.35E-03
28GO:0005771: multivesicular body2.35E-03
29GO:0030904: retromer complex2.35E-03
30GO:0033290: eukaryotic 48S preinitiation complex2.83E-03
31GO:0005788: endoplasmic reticulum lumen3.35E-03
32GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane3.86E-03
33GO:0000421: autophagosome membrane3.86E-03
34GO:0009707: chloroplast outer membrane4.12E-03
35GO:0005779: integral component of peroxisomal membrane4.42E-03
36GO:0005742: mitochondrial outer membrane translocase complex4.42E-03
37GO:0005789: endoplasmic reticulum membrane4.75E-03
38GO:0000325: plant-type vacuole4.76E-03
39GO:0015934: large ribosomal subunit4.76E-03
40GO:0071011: precatalytic spliceosome5.62E-03
41GO:0005730: nucleolus5.80E-03
42GO:0005794: Golgi apparatus6.58E-03
43GO:0008541: proteasome regulatory particle, lid subcomplex6.91E-03
44GO:0071013: catalytic step 2 spliceosome6.91E-03
45GO:0005737: cytoplasm8.47E-03
46GO:0005750: mitochondrial respiratory chain complex III9.03E-03
47GO:0030176: integral component of endoplasmic reticulum membrane9.79E-03
48GO:0009536: plastid1.03E-02
49GO:0005576: extracellular region1.12E-02
50GO:0042651: thylakoid membrane1.22E-02
51GO:0070469: respiratory chain1.22E-02
52GO:0015935: small ribosomal subunit1.30E-02
53GO:0031410: cytoplasmic vesicle1.39E-02
54GO:0005886: plasma membrane1.59E-02
55GO:0009504: cell plate2.05E-02
56GO:0031965: nuclear membrane2.05E-02
57GO:0071944: cell periphery2.36E-02
58GO:0005778: peroxisomal membrane2.57E-02
59GO:0005777: peroxisome3.76E-02
60GO:0009941: chloroplast envelope4.04E-02
61GO:0031902: late endosome membrane4.51E-02
62GO:0090406: pollen tube4.78E-02
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Gene type



Gene DE type