co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G10450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990258: histone glutamine methylation	0.00E+00
2	GO:0031120: snRNA pseudouridine synthesis	0.00E+00
3	GO:0051050: positive regulation of transport	0.00E+00
4	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
5	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
6	GO:0031118: rRNA pseudouridine synthesis	0.00E+00
7	GO:0072321: chaperone-mediated protein transport	0.00E+00
8	GO:0044843: cell cycle G1/S phase transition	0.00E+00
9	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
10	GO:0045041: protein import into mitochondrial intermembrane space	0.00E+00
11	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
12	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
13	GO:0034050: host programmed cell death induced by symbiont	0.00E+00
14	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
15	GO:0071731: response to nitric oxide	0.00E+00
16	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
17	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
18	GO:0006412: translation	1.15E-147
19	GO:0042254: ribosome biogenesis	9.48E-60
20	GO:0000027: ribosomal large subunit assembly	3.88E-15
21	GO:0006626: protein targeting to mitochondrion	2.24E-12
22	GO:0006364: rRNA processing	2.09E-09
23	GO:0006458: 'de novo' protein folding	3.65E-07
24	GO:0000028: ribosomal small subunit assembly	1.26E-06
25	GO:0007005: mitochondrion organization	4.42E-06
26	GO:0000387: spliceosomal snRNP assembly	4.94E-06
27	GO:0006413: translational initiation	1.38E-05
28	GO:0048569: post-embryonic animal organ development	1.91E-05
29	GO:0009967: positive regulation of signal transduction	1.91E-05
30	GO:0009955: adaxial/abaxial pattern specification	2.47E-05
31	GO:0042026: protein refolding	2.47E-05
32	GO:0009735: response to cytokinin	2.50E-05
33	GO:0030150: protein import into mitochondrial matrix	4.64E-05
34	GO:0002181: cytoplasmic translation	6.24E-05
35	GO:0045039: protein import into mitochondrial inner membrane	6.24E-05
36	GO:1902626: assembly of large subunit precursor of preribosome	6.24E-05
37	GO:0061077: chaperone-mediated protein folding	6.81E-05
38	GO:0008033: tRNA processing	1.50E-04
39	GO:0010162: seed dormancy process	1.70E-04
40	GO:0042274: ribosomal small subunit biogenesis	2.21E-04
41	GO:0000398: mRNA splicing, via spliceosome	2.41E-04
42	GO:0046686: response to cadmium ion	2.48E-04
43	GO:0080156: mitochondrial mRNA modification	2.48E-04
44	GO:0031167: rRNA methylation	3.33E-04
45	GO:0045040: protein import into mitochondrial outer membrane	4.64E-04
46	GO:0000245: spliceosomal complex assembly	6.16E-04
47	GO:0016444: somatic cell DNA recombination	6.16E-04
48	GO:0000469: cleavage involved in rRNA processing	6.66E-04
49	GO:0015801: aromatic amino acid transport	6.66E-04
50	GO:0035266: meristem growth	6.66E-04
51	GO:0030490: maturation of SSU-rRNA	6.66E-04
52	GO:0006434: seryl-tRNA aminoacylation	6.66E-04
53	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.66E-04
54	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.66E-04
55	GO:0006169: adenosine salvage	6.66E-04
56	GO:0006407: rRNA export from nucleus	6.66E-04
57	GO:0019877: diaminopimelate biosynthetic process	6.66E-04
58	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	6.66E-04
59	GO:0001510: RNA methylation	1.19E-03
60	GO:0010197: polar nucleus fusion	1.34E-03
61	GO:0045859: regulation of protein kinase activity	1.44E-03
62	GO:0045905: positive regulation of translational termination	1.44E-03
63	GO:0009156: ribonucleoside monophosphate biosynthetic process	1.44E-03
64	GO:2000072: regulation of defense response to fungus, incompatible interaction	1.44E-03
65	GO:0045901: positive regulation of translational elongation	1.44E-03
66	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	1.44E-03
67	GO:0006452: translational frameshifting	1.44E-03
68	GO:0015786: UDP-glucose transport	1.44E-03
69	GO:0008283: cell proliferation	1.46E-03
70	GO:0009150: purine ribonucleotide metabolic process	2.37E-03
71	GO:0015783: GDP-fucose transport	2.37E-03
72	GO:0010476: gibberellin mediated signaling pathway	2.37E-03
73	GO:0042256: mature ribosome assembly	2.37E-03
74	GO:0006954: inflammatory response	2.37E-03
75	GO:0006820: anion transport	2.62E-03
76	GO:0006446: regulation of translational initiation	3.36E-03
77	GO:0009855: determination of bilateral symmetry	3.44E-03
78	GO:0051131: chaperone-mediated protein complex assembly	3.44E-03
79	GO:0046513: ceramide biosynthetic process	3.44E-03
80	GO:0006515: misfolded or incompletely synthesized protein catabolic process	3.44E-03
81	GO:0007004: telomere maintenance via telomerase	3.44E-03
82	GO:0033617: mitochondrial respiratory chain complex IV assembly	3.44E-03
83	GO:0070301: cellular response to hydrogen peroxide	3.44E-03
84	GO:0006241: CTP biosynthetic process	3.44E-03
85	GO:0072334: UDP-galactose transmembrane transport	3.44E-03
86	GO:0006165: nucleoside diphosphate phosphorylation	3.44E-03
87	GO:0006228: UTP biosynthetic process	3.44E-03
88	GO:0032981: mitochondrial respiratory chain complex I assembly	3.44E-03
89	GO:0006164: purine nucleotide biosynthetic process	3.44E-03
90	GO:0006414: translational elongation	4.24E-03
91	GO:0051205: protein insertion into membrane	4.65E-03
92	GO:0009165: nucleotide biosynthetic process	4.65E-03
93	GO:0006183: GTP biosynthetic process	4.65E-03
94	GO:0042273: ribosomal large subunit biogenesis	4.65E-03
95	GO:0009944: polarity specification of adaxial/abaxial axis	4.68E-03
96	GO:0006334: nucleosome assembly	5.69E-03
97	GO:0097428: protein maturation by iron-sulfur cluster transfer	5.98E-03
98	GO:0006461: protein complex assembly	5.98E-03
99	GO:1902183: regulation of shoot apical meristem development	5.98E-03
100	GO:0044209: AMP salvage	5.98E-03
101	GO:0009294: DNA mediated transformation	6.81E-03
102	GO:0040007: growth	6.81E-03
103	GO:0071215: cellular response to abscisic acid stimulus	6.81E-03
104	GO:0000741: karyogamy	7.42E-03
105	GO:0001731: formation of translation preinitiation complex	7.42E-03
106	GO:0016070: RNA metabolic process	7.42E-03
107	GO:0000470: maturation of LSU-rRNA	7.42E-03
108	GO:0016554: cytidine to uridine editing	7.42E-03
109	GO:0000413: protein peptidyl-prolyl isomerization	8.71E-03
110	GO:0000054: ribosomal subunit export from nucleus	8.97E-03
111	GO:0080186: developmental vegetative growth	1.06E-02
112	GO:0009793: embryo development ending in seed dormancy	1.23E-02
113	GO:0006605: protein targeting	1.24E-02
114	GO:0035265: organ growth	1.24E-02
115	GO:0001522: pseudouridine synthesis	1.24E-02
116	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.24E-02
117	GO:0010204: defense response signaling pathway, resistance gene-independent	1.43E-02
118	GO:0043562: cellular response to nitrogen levels	1.43E-02
119	GO:0006002: fructose 6-phosphate metabolic process	1.43E-02
120	GO:0001558: regulation of cell growth	1.43E-02
121	GO:0048507: meristem development	1.62E-02
122	GO:0006189: 'de novo' IMP biosynthetic process	1.62E-02
123	GO:0015780: nucleotide-sugar transport	1.62E-02
124	GO:0098656: anion transmembrane transport	1.62E-02
125	GO:0007338: single fertilization	1.62E-02
126	GO:0009553: embryo sac development	1.66E-02
127	GO:0042761: very long-chain fatty acid biosynthetic process	1.83E-02
128	GO:0010449: root meristem growth	1.83E-02
129	GO:0030422: production of siRNA involved in RNA interference	2.04E-02
130	GO:0006259: DNA metabolic process	2.04E-02
131	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.04E-02
132	GO:0006879: cellular iron ion homeostasis	2.26E-02
133	GO:0010015: root morphogenesis	2.26E-02
134	GO:0006913: nucleocytoplasmic transport	2.26E-02
135	GO:0009089: lysine biosynthetic process via diaminopimelate	2.26E-02
136	GO:0010311: lateral root formation	2.33E-02
137	GO:0006790: sulfur compound metabolic process	2.49E-02
138	GO:0012501: programmed cell death	2.49E-02
139	GO:0000724: double-strand break repair via homologous recombination	2.69E-02
140	GO:2000012: regulation of auxin polar transport	2.73E-02
141	GO:0010102: lateral root morphogenesis	2.73E-02
142	GO:0048467: gynoecium development	2.98E-02
143	GO:0090351: seedling development	3.23E-02
144	GO:0015031: protein transport	3.56E-02
145	GO:0006289: nucleotide-excision repair	3.76E-02
146	GO:0009116: nucleoside metabolic process	3.76E-02
147	GO:0009644: response to high light intensity	3.91E-02
148	GO:0010073: meristem maintenance	4.03E-02
149	GO:0051302: regulation of cell division	4.03E-02
150	GO:0009965: leaf morphogenesis	4.07E-02
151	GO:0008380: RNA splicing	4.26E-02
152	GO:0003333: amino acid transmembrane transport	4.31E-02
153	GO:0015992: proton transport	4.31E-02
154	GO:0016226: iron-sulfur cluster assembly	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0016018: cyclosporin A binding	0.00E+00
4	GO:0034513: box H/ACA snoRNA binding	0.00E+00
5	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	2.21E-180
7	GO:0003729: mRNA binding	7.84E-34
8	GO:0019843: rRNA binding	1.91E-14
9	GO:0003723: RNA binding	2.94E-14
10	GO:0044183: protein binding involved in protein folding	4.14E-09
11	GO:0030515: snoRNA binding	7.18E-09
12	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.34E-08
13	GO:0003746: translation elongation factor activity	6.34E-08
14	GO:0005078: MAP-kinase scaffold activity	1.91E-05
15	GO:0003743: translation initiation factor activity	3.00E-05
16	GO:0000166: nucleotide binding	3.62E-05
17	GO:0015288: porin activity	5.56E-05
18	GO:0008649: rRNA methyltransferase activity	6.24E-05
19	GO:0008097: 5S rRNA binding	1.30E-04
20	GO:0001055: RNA polymerase II activity	1.34E-04
21	GO:0001054: RNA polymerase I activity	2.10E-04
22	GO:0001056: RNA polymerase III activity	2.55E-04
23	GO:0004407: histone deacetylase activity	5.57E-04
24	GO:0005080: protein kinase C binding	6.66E-04
25	GO:0004001: adenosine kinase activity	6.66E-04
26	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	6.66E-04
27	GO:0035614: snRNA stem-loop binding	6.66E-04
28	GO:0042134: rRNA primary transcript binding	6.66E-04
29	GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase	6.66E-04
30	GO:0000824: inositol tetrakisphosphate 3-kinase activity	6.66E-04
31	GO:0004828: serine-tRNA ligase activity	6.66E-04
32	GO:0004679: AMP-activated protein kinase activity	6.66E-04
33	GO:0047326: inositol tetrakisphosphate 5-kinase activity	6.66E-04
34	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	6.66E-04
35	GO:0048037: cofactor binding	6.66E-04
36	GO:0051082: unfolded protein binding	8.83E-04
37	GO:0043022: ribosome binding	9.77E-04
38	GO:0008308: voltage-gated anion channel activity	1.19E-03
39	GO:0035241: protein-arginine omega-N monomethyltransferase activity	1.44E-03
40	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	1.44E-03
41	GO:0030619: U1 snRNA binding	1.44E-03
42	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.44E-03
43	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	1.44E-03
44	GO:0036455: iron-sulfur transferase activity	1.44E-03
45	GO:0050291: sphingosine N-acyltransferase activity	1.44E-03
46	GO:0015173: aromatic amino acid transmembrane transporter activity	1.44E-03
47	GO:0070034: telomerase RNA binding	1.44E-03
48	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.44E-03
49	GO:0070361: mitochondrial light strand promoter anti-sense binding	1.44E-03
50	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	1.44E-03
51	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.37E-03
52	GO:0005457: GDP-fucose transmembrane transporter activity	2.37E-03
53	GO:0008469: histone-arginine N-methyltransferase activity	2.37E-03
54	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.37E-03
55	GO:0032947: protein complex scaffold	2.37E-03
56	GO:0015266: protein channel activity	2.98E-03
57	GO:0005460: UDP-glucose transmembrane transporter activity	3.44E-03
58	GO:0004550: nucleoside diphosphate kinase activity	3.44E-03
59	GO:0047627: adenylylsulfatase activity	3.44E-03
60	GO:0004749: ribose phosphate diphosphokinase activity	3.44E-03
61	GO:0005507: copper ion binding	3.80E-03
62	GO:0070628: proteasome binding	4.65E-03
63	GO:0050897: cobalt ion binding	4.80E-03
64	GO:0008198: ferrous iron binding	5.98E-03
65	GO:0004040: amidase activity	5.98E-03
66	GO:0005459: UDP-galactose transmembrane transporter activity	5.98E-03
67	GO:0005275: amine transmembrane transporter activity	5.98E-03
68	GO:0031593: polyubiquitin binding	7.42E-03
69	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	7.42E-03
70	GO:0031369: translation initiation factor binding	7.42E-03
71	GO:0019887: protein kinase regulator activity	8.97E-03
72	GO:0004656: procollagen-proline 4-dioxygenase activity	8.97E-03
73	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.06E-02
74	GO:0008235: metalloexopeptidase activity	1.06E-02
75	GO:0003872: 6-phosphofructokinase activity	1.06E-02
76	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.10E-02
77	GO:0008135: translation factor activity, RNA binding	1.43E-02
78	GO:0003678: DNA helicase activity	1.62E-02
79	GO:0000049: tRNA binding	2.49E-02
80	GO:0009982: pseudouridine synthase activity	2.73E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	3.20E-02
82	GO:0042393: histone binding	3.20E-02
83	GO:0031418: L-ascorbic acid binding	3.76E-02
84	GO:0043130: ubiquitin binding	3.76E-02
85	GO:0051087: chaperone binding	4.03E-02
86	GO:0005216: ion channel activity	4.03E-02
87	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.22E-02
88	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	4.31E-02
89	GO:0004298: threonine-type endopeptidase activity	4.31E-02
90	GO:0004176: ATP-dependent peptidase activity	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0034457: Mpp10 complex	0.00E+00
3	GO:0043186: P granule	0.00E+00
4	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
5	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
6	GO:0072589: box H/ACA scaRNP complex	0.00E+00
7	GO:0005840: ribosome	1.83E-124
8	GO:0022625: cytosolic large ribosomal subunit	2.84E-112
9	GO:0022626: cytosolic ribosome	1.61E-102
10	GO:0022627: cytosolic small ribosomal subunit	1.47E-75
11	GO:0005730: nucleolus	2.02E-54
12	GO:0005829: cytosol	7.92E-45
13	GO:0005737: cytoplasm	6.19E-35
14	GO:0009506: plasmodesma	2.66E-25
15	GO:0005774: vacuolar membrane	7.90E-18
16	GO:0015934: large ribosomal subunit	4.59E-17
17	GO:0015935: small ribosomal subunit	9.41E-13
18	GO:0016020: membrane	5.39E-12
19	GO:0005618: cell wall	2.96E-11
20	GO:0005773: vacuole	1.46E-10
21	GO:0015030: Cajal body	9.52E-08
22	GO:0005732: small nucleolar ribonucleoprotein complex	2.74E-07
23	GO:0032040: small-subunit processome	3.71E-07
24	GO:0019013: viral nucleocapsid	5.44E-07
25	GO:0005742: mitochondrial outer membrane translocase complex	2.09E-06
26	GO:0005852: eukaryotic translation initiation factor 3 complex	9.99E-06
27	GO:0005681: spliceosomal complex	1.35E-05
28	GO:0031428: box C/D snoRNP complex	1.48E-05
29	GO:0009507: chloroplast	1.71E-05
30	GO:0005758: mitochondrial intermembrane space	4.64E-05
31	GO:0034719: SMN-Sm protein complex	6.24E-05
32	GO:0005853: eukaryotic translation elongation factor 1 complex	6.24E-05
33	GO:0046930: pore complex	7.73E-05
34	GO:0005736: DNA-directed RNA polymerase I complex	1.03E-04
35	GO:0005685: U1 snRNP	1.03E-04
36	GO:0031429: box H/ACA snoRNP complex	1.30E-04
37	GO:0005666: DNA-directed RNA polymerase III complex	1.34E-04
38	GO:0071011: precatalytic spliceosome	1.34E-04
39	GO:0000418: DNA-directed RNA polymerase IV complex	1.70E-04
40	GO:0071013: catalytic step 2 spliceosome	2.10E-04
41	GO:0005682: U5 snRNP	2.21E-04
42	GO:0005665: DNA-directed RNA polymerase II, core complex	2.55E-04
43	GO:0005886: plasma membrane	3.16E-04
44	GO:0005687: U4 snRNP	3.33E-04
45	GO:0097526: spliceosomal tri-snRNP complex	3.33E-04
46	GO:0005743: mitochondrial inner membrane	3.34E-04
47	GO:0005759: mitochondrial matrix	4.69E-04
48	GO:0005689: U12-type spliceosomal complex	6.16E-04
49	GO:0030686: 90S preribosome	6.66E-04
50	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	6.66E-04
51	GO:0005747: mitochondrial respiratory chain complex I	6.71E-04
52	GO:0005834: heterotrimeric G-protein complex	7.11E-04
53	GO:0005741: mitochondrial outer membrane	7.16E-04
54	GO:0031359: integral component of chloroplast outer membrane	7.87E-04
55	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.99E-04
56	GO:0071010: prespliceosome	1.44E-03
57	GO:0005686: U2 snRNP	1.97E-03
58	GO:0034715: pICln-Sm protein complex	2.37E-03
59	GO:0005739: mitochondrion	3.28E-03
60	GO:0000419: DNA-directed RNA polymerase V complex	4.22E-03
61	GO:0000974: Prp19 complex	7.42E-03
62	GO:0000243: commitment complex	7.42E-03
63	GO:0016282: eukaryotic 43S preinitiation complex	7.42E-03
64	GO:0033290: eukaryotic 48S preinitiation complex	8.97E-03
65	GO:0016272: prefoldin complex	8.97E-03
66	GO:0016363: nuclear matrix	8.97E-03
67	GO:0071004: U2-type prespliceosome	1.24E-02
68	GO:0005688: U6 snRNP	1.24E-02
69	GO:0009536: plastid	1.40E-02
70	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.43E-02
71	GO:0005763: mitochondrial small ribosomal subunit	1.62E-02
72	GO:0005622: intracellular	1.66E-02
73	GO:0030529: intracellular ribonucleoprotein complex	1.69E-02
74	GO:0016604: nuclear body	1.83E-02
75	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.04E-02
76	GO:0048471: perinuclear region of cytoplasm	2.26E-02
77	GO:0031307: integral component of mitochondrial outer membrane	2.49E-02
78	GO:0005839: proteasome core complex	4.31E-02