co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0010336: gibberellic acid homeostasis	0.00E+00
4	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046294: formaldehyde catabolic process	0.00E+00
7	GO:0046460: neutral lipid biosynthetic process	0.00E+00
8	GO:0009106: lipoate metabolic process	0.00E+00
9	GO:0032928: regulation of superoxide anion generation	0.00E+00
10	GO:0009249: protein lipoylation	0.00E+00
11	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.56E-06
12	GO:0010343: singlet oxygen-mediated programmed cell death	2.56E-06
13	GO:0010117: photoprotection	6.16E-05
14	GO:0046283: anthocyanin-containing compound metabolic process	6.16E-05
15	GO:0009903: chloroplast avoidance movement	1.24E-04
16	GO:0006520: cellular amino acid metabolic process	1.80E-04
17	GO:0034970: histone H3-R2 methylation	2.34E-04
18	GO:0034972: histone H3-R26 methylation	2.34E-04
19	GO:0010036: response to boron-containing substance	2.34E-04
20	GO:1902265: abscisic acid homeostasis	2.34E-04
21	GO:0034971: histone H3-R17 methylation	2.34E-04
22	GO:0072387: flavin adenine dinucleotide metabolic process	2.34E-04
23	GO:0006567: threonine catabolic process	2.34E-04
24	GO:0022900: electron transport chain	2.59E-04
25	GO:1900426: positive regulation of defense response to bacterium	3.73E-04
26	GO:1901529: positive regulation of anion channel activity	5.20E-04
27	GO:0048255: mRNA stabilization	5.20E-04
28	GO:0010617: circadian regulation of calcium ion oscillation	5.20E-04
29	GO:0007154: cell communication	5.20E-04
30	GO:0099402: plant organ development	5.20E-04
31	GO:0019441: tryptophan catabolic process to kynurenine	5.20E-04
32	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.20E-04
33	GO:0016122: xanthophyll metabolic process	5.20E-04
34	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	5.20E-04
35	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.20E-04
36	GO:0050826: response to freezing	6.54E-04
37	GO:0009637: response to blue light	7.52E-04
38	GO:0031022: nuclear migration along microfilament	8.44E-04
39	GO:1902448: positive regulation of shade avoidance	8.44E-04
40	GO:0006591: ornithine metabolic process	8.44E-04
41	GO:1901672: positive regulation of systemic acquired resistance	8.44E-04
42	GO:0009150: purine ribonucleotide metabolic process	8.44E-04
43	GO:0071492: cellular response to UV-A	8.44E-04
44	GO:0044375: regulation of peroxisome size	8.44E-04
45	GO:0010476: gibberellin mediated signaling pathway	8.44E-04
46	GO:0010325: raffinose family oligosaccharide biosynthetic process	8.44E-04
47	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	8.44E-04
48	GO:0009640: photomorphogenesis	1.03E-03
49	GO:0009650: UV protection	1.20E-03
50	GO:0009647: skotomorphogenesis	1.20E-03
51	GO:0033014: tetrapyrrole biosynthetic process	1.20E-03
52	GO:0009113: purine nucleobase biosynthetic process	1.20E-03
53	GO:0009963: positive regulation of flavonoid biosynthetic process	1.20E-03
54	GO:1901332: negative regulation of lateral root development	1.20E-03
55	GO:1902290: positive regulation of defense response to oomycetes	1.20E-03
56	GO:0006882: cellular zinc ion homeostasis	1.20E-03
57	GO:0046713: borate transport	1.20E-03
58	GO:0010371: regulation of gibberellin biosynthetic process	1.20E-03
59	GO:1902476: chloride transmembrane transport	1.20E-03
60	GO:0009765: photosynthesis, light harvesting	1.61E-03
61	GO:0009649: entrainment of circadian clock	1.61E-03
62	GO:0006749: glutathione metabolic process	1.61E-03
63	GO:1902347: response to strigolactone	1.61E-03
64	GO:0009902: chloroplast relocation	1.61E-03
65	GO:0034613: cellular protein localization	1.61E-03
66	GO:0006545: glycine biosynthetic process	1.61E-03
67	GO:0071486: cellular response to high light intensity	1.61E-03
68	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.61E-03
69	GO:0000304: response to singlet oxygen	2.05E-03
70	GO:0071493: cellular response to UV-B	2.05E-03
71	GO:0009904: chloroplast accumulation movement	2.05E-03
72	GO:0009107: lipoate biosynthetic process	2.05E-03
73	GO:0031053: primary miRNA processing	2.52E-03
74	GO:0060918: auxin transport	2.52E-03
75	GO:0006796: phosphate-containing compound metabolic process	2.52E-03
76	GO:1901371: regulation of leaf morphogenesis	2.52E-03
77	GO:0009117: nucleotide metabolic process	2.52E-03
78	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.52E-03
79	GO:0016070: RNA metabolic process	2.52E-03
80	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.03E-03
81	GO:0034389: lipid particle organization	3.03E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	3.03E-03
83	GO:0048444: floral organ morphogenesis	3.03E-03
84	GO:0010310: regulation of hydrogen peroxide metabolic process	3.03E-03
85	GO:0016126: sterol biosynthetic process	3.51E-03
86	GO:0071446: cellular response to salicylic acid stimulus	3.58E-03
87	GO:0006821: chloride transport	3.58E-03
88	GO:0030026: cellular manganese ion homeostasis	3.58E-03
89	GO:0009396: folic acid-containing compound biosynthetic process	3.58E-03
90	GO:0051510: regulation of unidimensional cell growth	3.58E-03
91	GO:0045292: mRNA cis splicing, via spliceosome	4.15E-03
92	GO:0010928: regulation of auxin mediated signaling pathway	4.15E-03
93	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.15E-03
94	GO:0030091: protein repair	4.15E-03
95	GO:1900150: regulation of defense response to fungus	4.15E-03
96	GO:0009704: de-etiolation	4.15E-03
97	GO:0009231: riboflavin biosynthetic process	4.15E-03
98	GO:0016559: peroxisome fission	4.15E-03
99	GO:0007623: circadian rhythm	4.68E-03
100	GO:0009880: embryonic pattern specification	4.74E-03
101	GO:0019430: removal of superoxide radicals	4.74E-03
102	GO:0010100: negative regulation of photomorphogenesis	4.74E-03
103	GO:0006526: arginine biosynthetic process	4.74E-03
104	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.74E-03
105	GO:0009407: toxin catabolic process	5.04E-03
106	GO:0009821: alkaloid biosynthetic process	5.37E-03
107	GO:0019432: triglyceride biosynthetic process	5.37E-03
108	GO:0046916: cellular transition metal ion homeostasis	5.37E-03
109	GO:0006783: heme biosynthetic process	5.37E-03
110	GO:0009056: catabolic process	5.37E-03
111	GO:0009638: phototropism	6.03E-03
112	GO:0006779: porphyrin-containing compound biosynthetic process	6.03E-03
113	GO:0035999: tetrahydrofolate interconversion	6.03E-03
114	GO:0051453: regulation of intracellular pH	6.03E-03
115	GO:0055062: phosphate ion homeostasis	6.71E-03
116	GO:0009688: abscisic acid biosynthetic process	6.71E-03
117	GO:0045036: protein targeting to chloroplast	6.71E-03
118	GO:0009641: shade avoidance	6.71E-03
119	GO:0006816: calcium ion transport	7.43E-03
120	GO:0008285: negative regulation of cell proliferation	7.43E-03
121	GO:0043085: positive regulation of catalytic activity	7.43E-03
122	GO:0006790: sulfur compound metabolic process	8.17E-03
123	GO:0030048: actin filament-based movement	8.93E-03
124	GO:0009785: blue light signaling pathway	8.93E-03
125	GO:0010075: regulation of meristem growth	8.93E-03
126	GO:0009416: response to light stimulus	9.79E-03
127	GO:0009585: red, far-red light phototransduction	1.01E-02
128	GO:0051603: proteolysis involved in cellular protein catabolic process	1.04E-02
129	GO:0007031: peroxisome organization	1.05E-02
130	GO:0000162: tryptophan biosynthetic process	1.14E-02
131	GO:0006071: glycerol metabolic process	1.14E-02
132	GO:2000377: regulation of reactive oxygen species metabolic process	1.22E-02
133	GO:0006874: cellular calcium ion homeostasis	1.31E-02
134	GO:0010073: meristem maintenance	1.31E-02
135	GO:0019915: lipid storage	1.40E-02
136	GO:0009693: ethylene biosynthetic process	1.59E-02
137	GO:0010227: floral organ abscission	1.59E-02
138	GO:0006012: galactose metabolic process	1.59E-02
139	GO:0032259: methylation	1.67E-02
140	GO:0016042: lipid catabolic process	1.70E-02
141	GO:0010051: xylem and phloem pattern formation	1.89E-02
142	GO:0010118: stomatal movement	1.89E-02
143	GO:0009058: biosynthetic process	1.90E-02
144	GO:0009958: positive gravitropism	1.99E-02
145	GO:0010268: brassinosteroid homeostasis	1.99E-02
146	GO:0042752: regulation of circadian rhythm	2.10E-02
147	GO:0009646: response to absence of light	2.10E-02
148	GO:0009851: auxin biosynthetic process	2.20E-02
149	GO:0016132: brassinosteroid biosynthetic process	2.31E-02
150	GO:0007264: small GTPase mediated signal transduction	2.42E-02
151	GO:1901657: glycosyl compound metabolic process	2.54E-02
152	GO:0010228: vegetative to reproductive phase transition of meristem	2.61E-02
153	GO:0016125: sterol metabolic process	2.65E-02
154	GO:0006464: cellular protein modification process	2.65E-02
155	GO:0009615: response to virus	3.01E-02
156	GO:0010029: regulation of seed germination	3.13E-02
157	GO:0009816: defense response to bacterium, incompatible interaction	3.13E-02
158	GO:0042128: nitrate assimilation	3.25E-02
159	GO:0015995: chlorophyll biosynthetic process	3.38E-02
160	GO:0048573: photoperiodism, flowering	3.38E-02
161	GO:0018298: protein-chromophore linkage	3.63E-02
162	GO:0008219: cell death	3.63E-02
163	GO:0000160: phosphorelay signal transduction system	3.76E-02
164	GO:0010218: response to far red light	3.89E-02
165	GO:0010119: regulation of stomatal movement	4.03E-02
166	GO:0009631: cold acclimation	4.03E-02
167	GO:0010043: response to zinc ion	4.03E-02
168	GO:0007568: aging	4.03E-02
169	GO:0055114: oxidation-reduction process	4.13E-02
170	GO:0030001: metal ion transport	4.71E-02
171	GO:0080167: response to karrikin	4.76E-02
172	GO:0006810: transport	4.90E-02
173	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
4	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
5	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
6	GO:0004848: ureidoglycolate hydrolase activity	9.29E-06
7	GO:0000254: C-4 methylsterol oxidase activity	2.11E-05
8	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.34E-04
9	GO:0015085: calcium ion transmembrane transporter activity	2.34E-04
10	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.34E-04
11	GO:0004793: threonine aldolase activity	2.34E-04
12	GO:0080139: borate efflux transmembrane transporter activity	2.34E-04
13	GO:0016783: sulfurtransferase activity	2.34E-04
14	GO:0004325: ferrochelatase activity	2.34E-04
15	GO:0008732: L-allo-threonine aldolase activity	2.34E-04
16	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.34E-04
17	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.34E-04
18	GO:0046480: galactolipid galactosyltransferase activity	2.34E-04
19	GO:0046906: tetrapyrrole binding	2.34E-04
20	GO:0080079: cellobiose glucosidase activity	2.34E-04
21	GO:0071949: FAD binding	3.13E-04
22	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.20E-04
23	GO:0004046: aminoacylase activity	5.20E-04
24	GO:0004061: arylformamidase activity	5.20E-04
25	GO:0016743: carboxyl- or carbamoyltransferase activity	5.20E-04
26	GO:0004329: formate-tetrahydrofolate ligase activity	5.20E-04
27	GO:0035241: protein-arginine omega-N monomethyltransferase activity	5.20E-04
28	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	5.20E-04
29	GO:0017118: lipoyltransferase activity	5.20E-04
30	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	5.20E-04
31	GO:0010331: gibberellin binding	5.20E-04
32	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.20E-04
33	GO:0016415: octanoyltransferase activity	5.20E-04
34	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.20E-04
35	GO:0019003: GDP binding	8.44E-04
36	GO:0003935: GTP cyclohydrolase II activity	8.44E-04
37	GO:0008469: histone-arginine N-methyltransferase activity	8.44E-04
38	GO:0004180: carboxypeptidase activity	8.44E-04
39	GO:0004185: serine-type carboxypeptidase activity	1.03E-03
40	GO:0035529: NADH pyrophosphatase activity	1.20E-03
41	GO:0004792: thiosulfate sulfurtransferase activity	1.20E-03
42	GO:0046715: borate transmembrane transporter activity	1.20E-03
43	GO:0000339: RNA cap binding	1.20E-03
44	GO:0009882: blue light photoreceptor activity	1.20E-03
45	GO:0047627: adenylylsulfatase activity	1.20E-03
46	GO:0008168: methyltransferase activity	1.54E-03
47	GO:0005253: anion channel activity	1.61E-03
48	GO:0015368: calcium:cation antiporter activity	1.61E-03
49	GO:0004834: tryptophan synthase activity	1.61E-03
50	GO:0015369: calcium:proton antiporter activity	1.61E-03
51	GO:0005452: inorganic anion exchanger activity	2.05E-03
52	GO:0015301: anion:anion antiporter activity	2.05E-03
53	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.52E-03
54	GO:0004784: superoxide dismutase activity	2.52E-03
55	GO:0005247: voltage-gated chloride channel activity	2.52E-03
56	GO:0004144: diacylglycerol O-acyltransferase activity	3.03E-03
57	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.21E-03
58	GO:0004427: inorganic diphosphatase activity	3.58E-03
59	GO:0016621: cinnamoyl-CoA reductase activity	3.58E-03
60	GO:0019899: enzyme binding	3.58E-03
61	GO:0004806: triglyceride lipase activity	4.13E-03
62	GO:0004034: aldose 1-epimerase activity	4.15E-03
63	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.15E-03
64	GO:0008236: serine-type peptidase activity	4.35E-03
65	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.74E-03
66	GO:0046914: transition metal ion binding	4.74E-03
67	GO:0004672: protein kinase activity	5.39E-03
68	GO:0001055: RNA polymerase II activity	6.03E-03
69	GO:0016844: strictosidine synthase activity	6.03E-03
70	GO:0042802: identical protein binding	6.34E-03
71	GO:0004713: protein tyrosine kinase activity	6.71E-03
72	GO:0004364: glutathione transferase activity	7.17E-03
73	GO:0004860: protein kinase inhibitor activity	7.43E-03
74	GO:0004129: cytochrome-c oxidase activity	7.43E-03
75	GO:0001054: RNA polymerase I activity	7.43E-03
76	GO:0051537: 2 iron, 2 sulfur cluster binding	8.08E-03
77	GO:0001056: RNA polymerase III activity	8.17E-03
78	GO:0008378: galactosyltransferase activity	8.17E-03
79	GO:0016788: hydrolase activity, acting on ester bonds	8.35E-03
80	GO:0031072: heat shock protein binding	8.93E-03
81	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.72E-03
82	GO:0005217: intracellular ligand-gated ion channel activity	1.05E-02
83	GO:0004970: ionotropic glutamate receptor activity	1.05E-02
84	GO:0004497: monooxygenase activity	1.07E-02
85	GO:0005528: FK506 binding	1.22E-02
86	GO:0022857: transmembrane transporter activity	1.35E-02
87	GO:0004176: ATP-dependent peptidase activity	1.40E-02
88	GO:0004386: helicase activity	1.57E-02
89	GO:0050662: coenzyme binding	2.10E-02
90	GO:0016853: isomerase activity	2.10E-02
91	GO:0048038: quinone binding	2.31E-02
92	GO:0004518: nuclease activity	2.42E-02
93	GO:0000156: phosphorelay response regulator activity	2.54E-02
94	GO:0005506: iron ion binding	2.75E-02
95	GO:0008483: transaminase activity	2.77E-02
96	GO:0008237: metallopeptidase activity	2.77E-02
97	GO:0016597: amino acid binding	2.89E-02
98	GO:0016168: chlorophyll binding	3.13E-02
99	GO:0016787: hydrolase activity	3.17E-02
100	GO:0003824: catalytic activity	3.22E-02
101	GO:0030247: polysaccharide binding	3.38E-02
102	GO:0046982: protein heterodimerization activity	3.78E-02
103	GO:0004222: metalloendopeptidase activity	3.89E-02
104	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.89E-02
105	GO:0016491: oxidoreductase activity	4.19E-02
106	GO:0008422: beta-glucosidase activity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0030427: site of polarized growth	0.00E+00
3	GO:0009507: chloroplast	3.21E-07
4	GO:0043674: columella	2.34E-04
5	GO:0000152: nuclear ubiquitin ligase complex	2.34E-04
6	GO:0005845: mRNA cap binding complex	2.34E-04
7	GO:0016604: nuclear body	3.73E-04
8	GO:0009535: chloroplast thylakoid membrane	4.42E-04
9	GO:0005846: nuclear cap binding complex	5.20E-04
10	GO:0016605: PML body	8.44E-04
11	GO:0016328: lateral plasma membrane	8.44E-04
12	GO:0042646: plastid nucleoid	1.20E-03
13	GO:0005773: vacuole	1.56E-03
14	GO:0009517: PSII associated light-harvesting complex II	1.61E-03
15	GO:0055035: plastid thylakoid membrane	2.05E-03
16	GO:0031969: chloroplast membrane	2.27E-03
17	GO:0034707: chloride channel complex	2.52E-03
18	GO:0005623: cell	3.21E-03
19	GO:0031359: integral component of chloroplast outer membrane	3.58E-03
20	GO:0005779: integral component of peroxisomal membrane	4.74E-03
21	GO:0005811: lipid particle	4.74E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.37E-03
23	GO:0042644: chloroplast nucleoid	5.37E-03
24	GO:0005764: lysosome	9.72E-03
25	GO:0030176: integral component of endoplasmic reticulum membrane	1.05E-02
26	GO:0000419: DNA-directed RNA polymerase V complex	1.14E-02
27	GO:0005777: peroxisome	1.21E-02
28	GO:0042651: thylakoid membrane	1.31E-02
29	GO:0015935: small ribosomal subunit	1.40E-02
30	GO:0009523: photosystem II	2.20E-02
31	GO:0009295: nucleoid	2.77E-02
32	GO:0005778: peroxisomal membrane	2.77E-02
33	GO:0009707: chloroplast outer membrane	3.63E-02
34	GO:0005819: spindle	4.57E-02
35	GO:0005829: cytosol	4.62E-02