co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008298: intracellular mRNA localization	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0019685: photosynthesis, dark reaction	0.00E+00
4	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
5	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
8	GO:0051246: regulation of protein metabolic process	0.00E+00
9	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
10	GO:0016123: xanthophyll biosynthetic process	1.07E-06
11	GO:0048564: photosystem I assembly	8.68E-06
12	GO:2001141: regulation of RNA biosynthetic process	3.50E-05
13	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.50E-05
14	GO:0045038: protein import into chloroplast thylakoid membrane	9.88E-05
15	GO:0016120: carotene biosynthetic process	9.88E-05
16	GO:0009658: chloroplast organization	1.21E-04
17	GO:0010190: cytochrome b6f complex assembly	1.43E-04
18	GO:0071806: protein transmembrane transport	3.11E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	3.11E-04
20	GO:0042371: vitamin K biosynthetic process	3.11E-04
21	GO:0071454: cellular response to anoxia	3.11E-04
22	GO:0006436: tryptophanyl-tRNA aminoacylation	3.11E-04
23	GO:0048438: floral whorl development	3.11E-04
24	GO:1902458: positive regulation of stomatal opening	3.11E-04
25	GO:0010362: negative regulation of anion channel activity by blue light	3.11E-04
26	GO:0033388: putrescine biosynthetic process from arginine	3.11E-04
27	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.11E-04
28	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	3.11E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	3.11E-04
30	GO:0006605: protein targeting	3.21E-04
31	GO:0071482: cellular response to light stimulus	3.94E-04
32	GO:0010027: thylakoid membrane organization	6.71E-04
33	GO:0000256: allantoin catabolic process	6.81E-04
34	GO:0009446: putrescine biosynthetic process	6.81E-04
35	GO:1900386: positive regulation of flavonol biosynthetic process	6.81E-04
36	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.81E-04
37	GO:0080153: negative regulation of reductive pentose-phosphate cycle	6.81E-04
38	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.81E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.81E-04
40	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	6.81E-04
41	GO:0080005: photosystem stoichiometry adjustment	6.81E-04
42	GO:0034755: iron ion transmembrane transport	6.81E-04
43	GO:0048314: embryo sac morphogenesis	6.81E-04
44	GO:0006435: threonyl-tRNA aminoacylation	6.81E-04
45	GO:0030187: melatonin biosynthetic process	6.81E-04
46	GO:0006352: DNA-templated transcription, initiation	7.52E-04
47	GO:0009767: photosynthetic electron transport chain	9.73E-04
48	GO:0010207: photosystem II assembly	1.09E-03
49	GO:0051604: protein maturation	1.10E-03
50	GO:0001578: microtubule bundle formation	1.10E-03
51	GO:0009405: pathogenesis	1.10E-03
52	GO:0006013: mannose metabolic process	1.10E-03
53	GO:0002230: positive regulation of defense response to virus by host	1.10E-03
54	GO:1901672: positive regulation of systemic acquired resistance	1.10E-03
55	GO:0010136: ureide catabolic process	1.10E-03
56	GO:0050482: arachidonic acid secretion	1.58E-03
57	GO:0090307: mitotic spindle assembly	1.58E-03
58	GO:0006809: nitric oxide biosynthetic process	1.58E-03
59	GO:0006145: purine nucleobase catabolic process	1.58E-03
60	GO:0051016: barbed-end actin filament capping	1.58E-03
61	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.58E-03
62	GO:0033014: tetrapyrrole biosynthetic process	1.58E-03
63	GO:0046739: transport of virus in multicellular host	1.58E-03
64	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.58E-03
65	GO:0009902: chloroplast relocation	2.12E-03
66	GO:0042274: ribosomal small subunit biogenesis	2.12E-03
67	GO:0051322: anaphase	2.12E-03
68	GO:0031935: regulation of chromatin silencing	2.12E-03
69	GO:0009765: photosynthesis, light harvesting	2.12E-03
70	GO:0007020: microtubule nucleation	2.12E-03
71	GO:0031122: cytoplasmic microtubule organization	2.12E-03
72	GO:0009306: protein secretion	2.36E-03
73	GO:0006364: rRNA processing	2.53E-03
74	GO:0006282: regulation of DNA repair	2.71E-03
75	GO:0009616: virus induced gene silencing	2.71E-03
76	GO:0034052: positive regulation of plant-type hypersensitive response	2.71E-03
77	GO:0046785: microtubule polymerization	2.71E-03
78	GO:0016558: protein import into peroxisome matrix	2.71E-03
79	GO:0008033: tRNA processing	2.76E-03
80	GO:0009643: photosynthetic acclimation	3.35E-03
81	GO:0042549: photosystem II stabilization	3.35E-03
82	GO:0035194: posttranscriptional gene silencing by RNA	3.35E-03
83	GO:0010193: response to ozone	3.68E-03
84	GO:0016032: viral process	3.92E-03
85	GO:0010189: vitamin E biosynthetic process	4.03E-03
86	GO:0010076: maintenance of floral meristem identity	4.03E-03
87	GO:0017148: negative regulation of translation	4.03E-03
88	GO:0009793: embryo development ending in seed dormancy	4.09E-03
89	GO:0006401: RNA catabolic process	4.76E-03
90	GO:0048528: post-embryonic root development	4.76E-03
91	GO:0009772: photosynthetic electron transport in photosystem II	4.76E-03
92	GO:1900056: negative regulation of leaf senescence	4.76E-03
93	GO:2000070: regulation of response to water deprivation	5.53E-03
94	GO:0006644: phospholipid metabolic process	5.53E-03
95	GO:0006402: mRNA catabolic process	5.53E-03
96	GO:0030091: protein repair	5.53E-03
97	GO:0042255: ribosome assembly	5.53E-03
98	GO:0006353: DNA-templated transcription, termination	5.53E-03
99	GO:0009816: defense response to bacterium, incompatible interaction	5.62E-03
100	GO:0015995: chlorophyll biosynthetic process	6.26E-03
101	GO:0032544: plastid translation	6.33E-03
102	GO:0009657: plastid organization	6.33E-03
103	GO:0018298: protein-chromophore linkage	6.93E-03
104	GO:0006783: heme biosynthetic process	7.19E-03
105	GO:0000373: Group II intron splicing	7.19E-03
106	GO:0007568: aging	8.02E-03
107	GO:0009910: negative regulation of flower development	8.02E-03
108	GO:1900426: positive regulation of defense response to bacterium	8.07E-03
109	GO:0009638: phototropism	8.07E-03
110	GO:0006779: porphyrin-containing compound biosynthetic process	8.07E-03
111	GO:0010380: regulation of chlorophyll biosynthetic process	8.07E-03
112	GO:0031425: chloroplast RNA processing	8.07E-03
113	GO:0009637: response to blue light	8.80E-03
114	GO:0045036: protein targeting to chloroplast	9.00E-03
115	GO:0006949: syncytium formation	9.00E-03
116	GO:0051555: flavonol biosynthetic process	9.00E-03
117	GO:0006879: cellular iron ion homeostasis	9.96E-03
118	GO:0009773: photosynthetic electron transport in photosystem I	9.96E-03
119	GO:0045037: protein import into chloroplast stroma	1.10E-02
120	GO:0010582: floral meristem determinacy	1.10E-02
121	GO:0009744: response to sucrose	1.14E-02
122	GO:0009725: response to hormone	1.20E-02
123	GO:0006807: nitrogen compound metabolic process	1.20E-02
124	GO:0006810: transport	1.23E-02
125	GO:0055114: oxidation-reduction process	1.25E-02
126	GO:0009266: response to temperature stimulus	1.31E-02
127	GO:0034605: cellular response to heat	1.31E-02
128	GO:0006541: glutamine metabolic process	1.31E-02
129	GO:0019253: reductive pentose-phosphate cycle	1.31E-02
130	GO:0090351: seedling development	1.42E-02
131	GO:0019853: L-ascorbic acid biosynthetic process	1.42E-02
132	GO:0006863: purine nucleobase transport	1.53E-02
133	GO:0010224: response to UV-B	1.59E-02
134	GO:0009863: salicylic acid mediated signaling pathway	1.65E-02
135	GO:0006418: tRNA aminoacylation for protein translation	1.77E-02
136	GO:0043622: cortical microtubule organization	1.77E-02
137	GO:0007017: microtubule-based process	1.77E-02
138	GO:0009416: response to light stimulus	1.84E-02
139	GO:0051321: meiotic cell cycle	1.89E-02
140	GO:0080092: regulation of pollen tube growth	2.01E-02
141	GO:0016226: iron-sulfur cluster assembly	2.01E-02
142	GO:0009553: embryo sac development	2.13E-02
143	GO:0006012: galactose metabolic process	2.14E-02
144	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.14E-02
145	GO:0015979: photosynthesis	2.16E-02
146	GO:0016117: carotenoid biosynthetic process	2.41E-02
147	GO:0070417: cellular response to cold	2.41E-02
148	GO:0000413: protein peptidyl-prolyl isomerization	2.55E-02
149	GO:0010118: stomatal movement	2.55E-02
150	GO:0048868: pollen tube development	2.68E-02
151	GO:0015986: ATP synthesis coupled proton transport	2.83E-02
152	GO:0007018: microtubule-based movement	2.83E-02
153	GO:0008654: phospholipid biosynthetic process	2.97E-02
154	GO:0009791: post-embryonic development	2.97E-02
155	GO:0006635: fatty acid beta-oxidation	3.12E-02
156	GO:0032502: developmental process	3.27E-02
157	GO:0007264: small GTPase mediated signal transduction	3.27E-02
158	GO:0031047: gene silencing by RNA	3.27E-02
159	GO:0009828: plant-type cell wall loosening	3.58E-02
160	GO:0006464: cellular protein modification process	3.58E-02
161	GO:0009451: RNA modification	3.87E-02
162	GO:0051607: defense response to virus	3.89E-02
163	GO:0000910: cytokinesis	3.89E-02
164	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.22E-02
165	GO:0042128: nitrate assimilation	4.38E-02
166	GO:0009817: defense response to fungus, incompatible interaction	4.89E-02
167	GO:0048481: plant ovule development	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0042623: ATPase activity, coupled	0.00E+00
9	GO:0010276: phytol kinase activity	0.00E+00
10	GO:0001053: plastid sigma factor activity	6.26E-05
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.26E-05
12	GO:0016987: sigma factor activity	6.26E-05
13	GO:0008242: omega peptidase activity	3.11E-04
14	GO:0004830: tryptophan-tRNA ligase activity	3.11E-04
15	GO:0030941: chloroplast targeting sequence binding	3.11E-04
16	GO:0004654: polyribonucleotide nucleotidyltransferase activity	3.11E-04
17	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	3.11E-04
18	GO:0004325: ferrochelatase activity	3.11E-04
19	GO:0048038: quinone binding	4.19E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.81E-04
21	GO:0004829: threonine-tRNA ligase activity	6.81E-04
22	GO:0034722: gamma-glutamyl-peptidase activity	6.81E-04
23	GO:0016491: oxidoreductase activity	1.07E-03
24	GO:0004751: ribose-5-phosphate isomerase activity	1.10E-03
25	GO:0004180: carboxypeptidase activity	1.10E-03
26	GO:0032947: protein complex scaffold	1.10E-03
27	GO:0004148: dihydrolipoyl dehydrogenase activity	1.10E-03
28	GO:0000900: translation repressor activity, nucleic acid binding	1.10E-03
29	GO:0005528: FK506 binding	1.50E-03
30	GO:0009882: blue light photoreceptor activity	1.58E-03
31	GO:0043023: ribosomal large subunit binding	1.58E-03
32	GO:0016851: magnesium chelatase activity	1.58E-03
33	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.11E-03
34	GO:0051861: glycolipid binding	2.12E-03
35	GO:0043015: gamma-tubulin binding	2.12E-03
36	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.12E-03
37	GO:0043495: protein anchor	2.12E-03
38	GO:0051011: microtubule minus-end binding	2.71E-03
39	GO:0004623: phospholipase A2 activity	2.71E-03
40	GO:0008080: N-acetyltransferase activity	2.98E-03
41	GO:0010181: FMN binding	3.20E-03
42	GO:0004605: phosphatidate cytidylyltransferase activity	3.35E-03
43	GO:0004559: alpha-mannosidase activity	4.03E-03
44	GO:0015631: tubulin binding	4.03E-03
45	GO:0019899: enzyme binding	4.76E-03
46	GO:0019843: rRNA binding	5.28E-03
47	GO:0004033: aldo-keto reductase (NADP) activity	5.53E-03
48	GO:0003724: RNA helicase activity	6.33E-03
49	GO:0008236: serine-type peptidase activity	6.59E-03
50	GO:0003924: GTPase activity	7.75E-03
51	GO:0005381: iron ion transmembrane transporter activity	8.07E-03
52	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.96E-03
53	GO:0042802: identical protein binding	1.08E-02
54	GO:0000155: phosphorelay sensor kinase activity	1.20E-02
55	GO:0000175: 3'-5'-exoribonuclease activity	1.20E-02
56	GO:0051537: 2 iron, 2 sulfur cluster binding	1.23E-02
57	GO:0016887: ATPase activity	1.50E-02
58	GO:0003887: DNA-directed DNA polymerase activity	1.53E-02
59	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.54E-02
60	GO:0003690: double-stranded DNA binding	1.59E-02
61	GO:0051536: iron-sulfur cluster binding	1.65E-02
62	GO:0003777: microtubule motor activity	1.70E-02
63	GO:0031625: ubiquitin protein ligase binding	1.70E-02
64	GO:0043424: protein histidine kinase binding	1.77E-02
65	GO:0005345: purine nucleobase transmembrane transporter activity	1.77E-02
66	GO:0008233: peptidase activity	1.79E-02
67	GO:0004176: ATP-dependent peptidase activity	1.89E-02
68	GO:0022891: substrate-specific transmembrane transporter activity	2.14E-02
69	GO:0003727: single-stranded RNA binding	2.27E-02
70	GO:0004812: aminoacyl-tRNA ligase activity	2.41E-02
71	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.68E-02
72	GO:0004872: receptor activity	2.97E-02
73	GO:0003723: RNA binding	3.03E-02
74	GO:0004519: endonuclease activity	3.30E-02
75	GO:0003674: molecular_function	3.69E-02
76	GO:0005200: structural constituent of cytoskeleton	3.73E-02
77	GO:0008483: transaminase activity	3.73E-02
78	GO:0005525: GTP binding	3.83E-02
79	GO:0008017: microtubule binding	3.96E-02
80	GO:0016168: chlorophyll binding	4.22E-02
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.67E-32
2	GO:0009535: chloroplast thylakoid membrane	3.04E-18
3	GO:0009941: chloroplast envelope	3.34E-06
4	GO:0009570: chloroplast stroma	5.63E-06
5	GO:0009543: chloroplast thylakoid lumen	1.70E-05
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.73E-05
7	GO:0055035: plastid thylakoid membrane	9.88E-05
8	GO:0080085: signal recognition particle, chloroplast targeting	6.81E-04
9	GO:0008274: gamma-tubulin ring complex	6.81E-04
10	GO:0008290: F-actin capping protein complex	6.81E-04
11	GO:0030095: chloroplast photosystem II	1.09E-03
12	GO:0009528: plastid inner membrane	1.10E-03
13	GO:0010007: magnesium chelatase complex	1.10E-03
14	GO:0033281: TAT protein transport complex	1.10E-03
15	GO:0031977: thylakoid lumen	1.56E-03
16	GO:0000923: equatorial microtubule organizing center	1.58E-03
17	GO:0042651: thylakoid membrane	1.66E-03
18	GO:0009579: thylakoid	2.05E-03
19	GO:0009534: chloroplast thylakoid	2.09E-03
20	GO:0030286: dynein complex	2.12E-03
21	GO:0009526: plastid envelope	2.12E-03
22	GO:0072686: mitotic spindle	2.71E-03
23	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.35E-03
24	GO:0009523: photosystem II	3.43E-03
25	GO:0010005: cortical microtubule, transverse to long axis	4.03E-03
26	GO:0031969: chloroplast membrane	4.29E-03
27	GO:0031359: integral component of chloroplast outer membrane	4.76E-03
28	GO:0009533: chloroplast stromal thylakoid	4.76E-03
29	GO:0046930: pore complex	6.33E-03
30	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.33E-03
31	GO:0009707: chloroplast outer membrane	6.93E-03
32	GO:0042644: chloroplast nucleoid	7.19E-03
33	GO:0000922: spindle pole	7.19E-03
34	GO:0055028: cortical microtubule	9.00E-03
35	GO:0016324: apical plasma membrane	9.00E-03
36	GO:0009505: plant-type cell wall	9.01E-03
37	GO:0009508: plastid chromosome	1.20E-02
38	GO:0005938: cell cortex	1.20E-02
39	GO:0009574: preprophase band	1.20E-02
40	GO:0031966: mitochondrial membrane	1.43E-02
41	GO:0005875: microtubule associated complex	1.53E-02
42	GO:0043234: protein complex	1.53E-02
43	GO:0005874: microtubule	1.75E-02
44	GO:0045271: respiratory chain complex I	1.77E-02
45	GO:0009654: photosystem II oxygen evolving complex	1.77E-02
46	GO:0005747: mitochondrial respiratory chain complex I	1.88E-02
47	GO:0009706: chloroplast inner membrane	2.19E-02
48	GO:0005871: kinesin complex	2.41E-02
49	GO:0010287: plastoglobule	2.60E-02
50	GO:0005623: cell	2.82E-02
51	GO:0019898: extrinsic component of membrane	2.97E-02
52	GO:0005778: peroxisomal membrane	3.73E-02
53	GO:0010319: stromule	3.73E-02
54	GO:0009295: nucleoid	3.73E-02