co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G09650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
5	GO:0016123: xanthophyll biosynthetic process	1.45E-07
6	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.02E-06
7	GO:0048564: photosystem I assembly	1.27E-06
8	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.93E-06
9	GO:0009765: photosynthesis, light harvesting	1.67E-05
10	GO:0015979: photosynthesis	1.70E-05
11	GO:0016120: carotene biosynthetic process	2.73E-05
12	GO:0042371: vitamin K biosynthetic process	1.44E-04
13	GO:0071454: cellular response to anoxia	1.44E-04
14	GO:1902458: positive regulation of stomatal opening	1.44E-04
15	GO:0015995: chlorophyll biosynthetic process	1.97E-04
16	GO:0018298: protein-chromophore linkage	2.27E-04
17	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.29E-04
18	GO:0006435: threonyl-tRNA aminoacylation	3.29E-04
19	GO:0080005: photosystem stoichiometry adjustment	3.29E-04
20	GO:0080183: response to photooxidative stress	3.29E-04
21	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.29E-04
22	GO:0080153: negative regulation of reductive pentose-phosphate cycle	3.29E-04
23	GO:0009767: photosynthetic electron transport chain	3.34E-04
24	GO:0006013: mannose metabolic process	5.40E-04
25	GO:0090391: granum assembly	5.40E-04
26	GO:0007017: microtubule-based process	5.75E-04
27	GO:0009658: chloroplast organization	5.76E-04
28	GO:0009102: biotin biosynthetic process	7.73E-04
29	GO:0090307: mitotic spindle assembly	7.73E-04
30	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	7.73E-04
31	GO:0009306: protein secretion	8.13E-04
32	GO:0008033: tRNA processing	9.45E-04
33	GO:0031122: cytoplasmic microtubule organization	1.02E-03
34	GO:0045038: protein import into chloroplast thylakoid membrane	1.29E-03
35	GO:0006810: transport	1.36E-03
36	GO:0010190: cytochrome b6f complex assembly	1.59E-03
37	GO:0009643: photosynthetic acclimation	1.59E-03
38	GO:0010189: vitamin E biosynthetic process	1.91E-03
39	GO:0010019: chloroplast-nucleus signaling pathway	1.91E-03
40	GO:1900056: negative regulation of leaf senescence	2.24E-03
41	GO:0006401: RNA catabolic process	2.24E-03
42	GO:0042255: ribosome assembly	2.60E-03
43	GO:0006353: DNA-templated transcription, termination	2.60E-03
44	GO:0006402: mRNA catabolic process	2.60E-03
45	GO:2000070: regulation of response to water deprivation	2.60E-03
46	GO:0009231: riboflavin biosynthetic process	2.60E-03
47	GO:0009793: embryo development ending in seed dormancy	3.34E-03
48	GO:0009051: pentose-phosphate shunt, oxidative branch	3.35E-03
49	GO:0000373: Group II intron splicing	3.35E-03
50	GO:0009744: response to sucrose	3.75E-03
51	GO:0009638: phototropism	3.76E-03
52	GO:0010380: regulation of chlorophyll biosynthetic process	3.76E-03
53	GO:0031425: chloroplast RNA processing	3.76E-03
54	GO:0045036: protein targeting to chloroplast	4.18E-03
55	GO:0006949: syncytium formation	4.18E-03
56	GO:0043085: positive regulation of catalytic activity	4.61E-03
57	GO:0045037: protein import into chloroplast stroma	5.06E-03
58	GO:0006006: glucose metabolic process	5.52E-03
59	GO:0009725: response to hormone	5.52E-03
60	GO:0034605: cellular response to heat	6.00E-03
61	GO:0019253: reductive pentose-phosphate cycle	6.00E-03
62	GO:0010207: photosystem II assembly	6.00E-03
63	GO:0006863: purine nucleobase transport	7.00E-03
64	GO:0080147: root hair cell development	7.52E-03
65	GO:0019953: sexual reproduction	8.06E-03
66	GO:0019915: lipid storage	8.61E-03
67	GO:0080092: regulation of pollen tube growth	9.17E-03
68	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.75E-03
69	GO:0016117: carotenoid biosynthetic process	1.09E-02
70	GO:0070417: cellular response to cold	1.09E-02
71	GO:0000413: protein peptidyl-prolyl isomerization	1.16E-02
72	GO:0048868: pollen tube development	1.22E-02
73	GO:0009451: RNA modification	1.27E-02
74	GO:0009791: post-embryonic development	1.35E-02
75	GO:0008654: phospholipid biosynthetic process	1.35E-02
76	GO:0010193: response to ozone	1.41E-02
77	GO:0032502: developmental process	1.48E-02
78	GO:0009416: response to light stimulus	1.51E-02
79	GO:0009828: plant-type cell wall loosening	1.62E-02
80	GO:0010286: heat acclimation	1.69E-02
81	GO:0009816: defense response to bacterium, incompatible interaction	1.91E-02
82	GO:0042254: ribosome biogenesis	1.97E-02
83	GO:0055085: transmembrane transport	2.04E-02
84	GO:0006457: protein folding	2.10E-02
85	GO:0009817: defense response to fungus, incompatible interaction	2.22E-02
86	GO:0080167: response to karrikin	2.39E-02
87	GO:0009910: negative regulation of flower development	2.46E-02
88	GO:0007568: aging	2.46E-02
89	GO:0009867: jasmonic acid mediated signaling pathway	2.63E-02
90	GO:0009644: response to high light intensity	3.33E-02
91	GO:0042538: hyperosmotic salinity response	3.70E-02
92	GO:0009664: plant-type cell wall organization	3.70E-02
93	GO:0006364: rRNA processing	3.89E-02
94	GO:0009585: red, far-red light phototransduction	3.89E-02
95	GO:0010224: response to UV-B	3.98E-02
96	GO:0009553: embryo sac development	4.89E-02
97	GO:0015031: protein transport	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
6	GO:0019899: enzyme binding	8.22E-07
7	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.67E-05
8	GO:0043495: protein anchor	1.67E-05
9	GO:0022891: substrate-specific transmembrane transporter activity	4.01E-05
10	GO:0048038: quinone binding	9.12E-05
11	GO:0046906: tetrapyrrole binding	1.44E-04
12	GO:0030941: chloroplast targeting sequence binding	1.44E-04
13	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.44E-04
14	GO:0016168: chlorophyll binding	1.69E-04
15	GO:0019843: rRNA binding	1.70E-04
16	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.54E-04
17	GO:0004829: threonine-tRNA ligase activity	3.29E-04
18	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.29E-04
19	GO:0004148: dihydrolipoyl dehydrogenase activity	5.40E-04
20	GO:0016851: magnesium chelatase activity	7.73E-04
21	GO:0051861: glycolipid binding	1.02E-03
22	GO:0043015: gamma-tubulin binding	1.02E-03
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.02E-03
24	GO:0051011: microtubule minus-end binding	1.29E-03
25	GO:0004605: phosphatidate cytidylyltransferase activity	1.59E-03
26	GO:0015631: tubulin binding	1.91E-03
27	GO:0004559: alpha-mannosidase activity	1.91E-03
28	GO:0051537: 2 iron, 2 sulfur cluster binding	4.06E-03
29	GO:0000175: 3'-5'-exoribonuclease activity	5.52E-03
30	GO:0008061: chitin binding	6.50E-03
31	GO:0043424: protein histidine kinase binding	8.06E-03
32	GO:0005345: purine nucleobase transmembrane transporter activity	8.06E-03
33	GO:0003727: single-stranded RNA binding	1.03E-02
34	GO:0008565: protein transporter activity	1.08E-02
35	GO:0004872: receptor activity	1.35E-02
36	GO:0003723: RNA binding	1.35E-02
37	GO:0016491: oxidoreductase activity	1.51E-02
38	GO:0042802: identical protein binding	1.58E-02
39	GO:0003674: molecular_function	1.58E-02
40	GO:0005200: structural constituent of cytoskeleton	1.69E-02
41	GO:0050897: cobalt ion binding	2.46E-02
42	GO:0050661: NADP binding	2.88E-02
43	GO:0051539: 4 iron, 4 sulfur cluster binding	2.88E-02
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.51E-02
45	GO:0009055: electron carrier activity	3.78E-02
46	GO:0004519: endonuclease activity	3.83E-02
47	GO:0003690: double-stranded DNA binding	3.98E-02
48	GO:0003777: microtubule motor activity	4.18E-02
49	GO:0045735: nutrient reservoir activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0009507: chloroplast	1.09E-31
3	GO:0009535: chloroplast thylakoid membrane	1.99E-24
4	GO:0009579: thylakoid	1.28E-09
5	GO:0009570: chloroplast stroma	1.57E-08
6	GO:0009941: chloroplast envelope	1.14E-07
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.63E-06
8	GO:0033281: TAT protein transport complex	3.82E-06
9	GO:0009543: chloroplast thylakoid lumen	1.33E-05
10	GO:0030286: dynein complex	1.67E-05
11	GO:0042651: thylakoid membrane	2.58E-05
12	GO:0009534: chloroplast thylakoid	3.27E-05
13	GO:0009523: photosystem II	8.23E-05
14	GO:0009706: chloroplast inner membrane	1.14E-04
15	GO:0008274: gamma-tubulin ring complex	3.29E-04
16	GO:0030095: chloroplast photosystem II	3.77E-04
17	GO:0031977: thylakoid lumen	3.92E-04
18	GO:0010007: magnesium chelatase complex	5.40E-04
19	GO:0009654: photosystem II oxygen evolving complex	5.75E-04
20	GO:0000923: equatorial microtubule organizing center	7.73E-04
21	GO:0009533: chloroplast stromal thylakoid	2.24E-03
22	GO:0031359: integral component of chloroplast outer membrane	2.24E-03
23	GO:0009538: photosystem I reaction center	2.60E-03
24	GO:0009539: photosystem II reaction center	2.96E-03
25	GO:0000922: spindle pole	3.35E-03
26	GO:0016324: apical plasma membrane	4.18E-03
27	GO:0031969: chloroplast membrane	4.45E-03
28	GO:0012511: monolayer-surrounded lipid storage body	4.61E-03
29	GO:0009508: plastid chromosome	5.52E-03
30	GO:0043234: protein complex	7.00E-03
31	GO:0005875: microtubule associated complex	7.00E-03
32	GO:0019898: extrinsic component of membrane	1.35E-02
33	GO:0009295: nucleoid	1.69E-02
34	GO:0016021: integral component of membrane	1.73E-02
35	GO:0009707: chloroplast outer membrane	2.22E-02
36	GO:0015934: large ribosomal subunit	2.46E-02
37	GO:0005840: ribosome	3.88E-02
38	GO:0005747: mitochondrial respiratory chain complex I	4.48E-02
39	GO:0009505: plant-type cell wall	4.82E-02