GO Enrichment Analysis of Co-expressed Genes with
AT4G09040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 3 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 6 | GO:0016123: xanthophyll biosynthetic process | 7.82E-07 |
| 7 | GO:0000373: Group II intron splicing | 1.30E-05 |
| 8 | GO:0016120: carotene biosynthetic process | 8.14E-05 |
| 9 | GO:0009793: embryo development ending in seed dormancy | 8.19E-05 |
| 10 | GO:1901259: chloroplast rRNA processing | 1.62E-04 |
| 11 | GO:0009451: RNA modification | 2.25E-04 |
| 12 | GO:0006353: DNA-templated transcription, termination | 2.69E-04 |
| 13 | GO:0048564: photosystem I assembly | 2.69E-04 |
| 14 | GO:0000476: maturation of 4.5S rRNA | 2.77E-04 |
| 15 | GO:0000967: rRNA 5'-end processing | 2.77E-04 |
| 16 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.77E-04 |
| 17 | GO:1904964: positive regulation of phytol biosynthetic process | 2.77E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 2.77E-04 |
| 19 | GO:1902458: positive regulation of stomatal opening | 2.77E-04 |
| 20 | GO:0006419: alanyl-tRNA aminoacylation | 2.77E-04 |
| 21 | GO:0071482: cellular response to light stimulus | 3.32E-04 |
| 22 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 6.09E-04 |
| 23 | GO:0034755: iron ion transmembrane transport | 6.09E-04 |
| 24 | GO:0080005: photosystem stoichiometry adjustment | 6.09E-04 |
| 25 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 6.09E-04 |
| 26 | GO:0010024: phytochromobilin biosynthetic process | 6.09E-04 |
| 27 | GO:0034470: ncRNA processing | 6.09E-04 |
| 28 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 6.09E-04 |
| 29 | GO:0009773: photosynthetic electron transport in photosystem I | 6.38E-04 |
| 30 | GO:0006352: DNA-templated transcription, initiation | 6.38E-04 |
| 31 | GO:0009767: photosynthetic electron transport chain | 8.26E-04 |
| 32 | GO:0015979: photosynthesis | 9.04E-04 |
| 33 | GO:0006788: heme oxidation | 9.88E-04 |
| 34 | GO:0006954: inflammatory response | 9.88E-04 |
| 35 | GO:0051604: protein maturation | 9.88E-04 |
| 36 | GO:0001578: microtubule bundle formation | 9.88E-04 |
| 37 | GO:0005977: glycogen metabolic process | 9.88E-04 |
| 38 | GO:0019853: L-ascorbic acid biosynthetic process | 1.04E-03 |
| 39 | GO:0090307: mitotic spindle assembly | 1.41E-03 |
| 40 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.41E-03 |
| 41 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.41E-03 |
| 42 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 1.41E-03 |
| 43 | GO:2001141: regulation of RNA biosynthetic process | 1.41E-03 |
| 44 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.41E-03 |
| 45 | GO:0009102: biotin biosynthetic process | 1.41E-03 |
| 46 | GO:0010239: chloroplast mRNA processing | 1.41E-03 |
| 47 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.89E-03 |
| 48 | GO:0007020: microtubule nucleation | 1.89E-03 |
| 49 | GO:0015846: polyamine transport | 1.89E-03 |
| 50 | GO:0031122: cytoplasmic microtubule organization | 1.89E-03 |
| 51 | GO:0006021: inositol biosynthetic process | 1.89E-03 |
| 52 | GO:0071483: cellular response to blue light | 1.89E-03 |
| 53 | GO:0010021: amylopectin biosynthetic process | 1.89E-03 |
| 54 | GO:0051322: anaphase | 1.89E-03 |
| 55 | GO:0009765: photosynthesis, light harvesting | 1.89E-03 |
| 56 | GO:0009306: protein secretion | 1.99E-03 |
| 57 | GO:0008033: tRNA processing | 2.33E-03 |
| 58 | GO:0009658: chloroplast organization | 2.37E-03 |
| 59 | GO:0046785: microtubule polymerization | 2.41E-03 |
| 60 | GO:0016558: protein import into peroxisome matrix | 2.41E-03 |
| 61 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.41E-03 |
| 62 | GO:0032973: amino acid export | 2.98E-03 |
| 63 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.98E-03 |
| 64 | GO:0046855: inositol phosphate dephosphorylation | 2.98E-03 |
| 65 | GO:0010190: cytochrome b6f complex assembly | 2.98E-03 |
| 66 | GO:0009643: photosynthetic acclimation | 2.98E-03 |
| 67 | GO:0017148: negative regulation of translation | 3.58E-03 |
| 68 | GO:0010189: vitamin E biosynthetic process | 3.58E-03 |
| 69 | GO:0006400: tRNA modification | 4.23E-03 |
| 70 | GO:0006401: RNA catabolic process | 4.23E-03 |
| 71 | GO:0048528: post-embryonic root development | 4.23E-03 |
| 72 | GO:0009772: photosynthetic electron transport in photosystem II | 4.23E-03 |
| 73 | GO:0043090: amino acid import | 4.23E-03 |
| 74 | GO:0010027: thylakoid membrane organization | 4.47E-03 |
| 75 | GO:0042255: ribosome assembly | 4.90E-03 |
| 76 | GO:0006402: mRNA catabolic process | 4.90E-03 |
| 77 | GO:0006605: protein targeting | 4.90E-03 |
| 78 | GO:2000070: regulation of response to water deprivation | 4.90E-03 |
| 79 | GO:0010492: maintenance of shoot apical meristem identity | 4.90E-03 |
| 80 | GO:0009231: riboflavin biosynthetic process | 4.90E-03 |
| 81 | GO:0017004: cytochrome complex assembly | 5.62E-03 |
| 82 | GO:0006098: pentose-phosphate shunt | 6.37E-03 |
| 83 | GO:0048507: meristem development | 6.37E-03 |
| 84 | GO:0080144: amino acid homeostasis | 6.37E-03 |
| 85 | GO:0009245: lipid A biosynthetic process | 6.37E-03 |
| 86 | GO:0031425: chloroplast RNA processing | 7.15E-03 |
| 87 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 7.97E-03 |
| 88 | GO:0006810: transport | 8.74E-03 |
| 89 | GO:1903507: negative regulation of nucleic acid-templated transcription | 8.82E-03 |
| 90 | GO:0006879: cellular iron ion homeostasis | 8.82E-03 |
| 91 | GO:0005975: carbohydrate metabolic process | 9.32E-03 |
| 92 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.70E-03 |
| 93 | GO:0045037: protein import into chloroplast stroma | 9.70E-03 |
| 94 | GO:0006790: sulfur compound metabolic process | 9.70E-03 |
| 95 | GO:2000012: regulation of auxin polar transport | 1.06E-02 |
| 96 | GO:0010628: positive regulation of gene expression | 1.06E-02 |
| 97 | GO:0009725: response to hormone | 1.06E-02 |
| 98 | GO:0006094: gluconeogenesis | 1.06E-02 |
| 99 | GO:0090351: seedling development | 1.25E-02 |
| 100 | GO:0046854: phosphatidylinositol phosphorylation | 1.25E-02 |
| 101 | GO:0006364: rRNA processing | 1.29E-02 |
| 102 | GO:0006863: purine nucleobase transport | 1.35E-02 |
| 103 | GO:0080167: response to karrikin | 1.47E-02 |
| 104 | GO:0043622: cortical microtubule organization | 1.56E-02 |
| 105 | GO:0007017: microtubule-based process | 1.56E-02 |
| 106 | GO:0048511: rhythmic process | 1.67E-02 |
| 107 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.78E-02 |
| 108 | GO:0080092: regulation of pollen tube growth | 1.78E-02 |
| 109 | GO:0071369: cellular response to ethylene stimulus | 1.89E-02 |
| 110 | GO:0006012: galactose metabolic process | 1.89E-02 |
| 111 | GO:0016117: carotenoid biosynthetic process | 2.13E-02 |
| 112 | GO:0000413: protein peptidyl-prolyl isomerization | 2.25E-02 |
| 113 | GO:0048868: pollen tube development | 2.37E-02 |
| 114 | GO:0015986: ATP synthesis coupled proton transport | 2.50E-02 |
| 115 | GO:0007018: microtubule-based movement | 2.50E-02 |
| 116 | GO:0006814: sodium ion transport | 2.50E-02 |
| 117 | GO:0042752: regulation of circadian rhythm | 2.50E-02 |
| 118 | GO:0006397: mRNA processing | 2.53E-02 |
| 119 | GO:0019252: starch biosynthetic process | 2.63E-02 |
| 120 | GO:0008654: phospholipid biosynthetic process | 2.63E-02 |
| 121 | GO:0010193: response to ozone | 2.76E-02 |
| 122 | GO:0006635: fatty acid beta-oxidation | 2.76E-02 |
| 123 | GO:0016032: viral process | 2.89E-02 |
| 124 | GO:0032502: developmental process | 2.89E-02 |
| 125 | GO:0000910: cytokinesis | 3.44E-02 |
| 126 | GO:0001666: response to hypoxia | 3.58E-02 |
| 127 | GO:0007166: cell surface receptor signaling pathway | 3.64E-02 |
| 128 | GO:0008380: RNA splicing | 3.79E-02 |
| 129 | GO:0015995: chlorophyll biosynthetic process | 4.02E-02 |
| 130 | GO:0016311: dephosphorylation | 4.17E-02 |
| 131 | GO:0009817: defense response to fungus, incompatible interaction | 4.33E-02 |
| 132 | GO:0018298: protein-chromophore linkage | 4.33E-02 |
| 133 | GO:0009555: pollen development | 4.87E-02 |
| 134 | GO:0042254: ribosome biogenesis | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 2 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 3 | GO:0019808: polyamine binding | 0.00E+00 |
| 4 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 7 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 8 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 9 | GO:0001053: plastid sigma factor activity | 5.13E-05 |
| 10 | GO:0016987: sigma factor activity | 5.13E-05 |
| 11 | GO:0004813: alanine-tRNA ligase activity | 2.77E-04 |
| 12 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.77E-04 |
| 13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.77E-04 |
| 14 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.09E-04 |
| 15 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.09E-04 |
| 16 | GO:0019156: isoamylase activity | 6.09E-04 |
| 17 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 6.09E-04 |
| 18 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.09E-04 |
| 19 | GO:0019843: rRNA binding | 7.53E-04 |
| 20 | GO:0004751: ribose-5-phosphate isomerase activity | 9.88E-04 |
| 21 | GO:0008017: microtubule binding | 1.31E-03 |
| 22 | GO:0009041: uridylate kinase activity | 1.41E-03 |
| 23 | GO:0043023: ribosomal large subunit binding | 1.41E-03 |
| 24 | GO:0008508: bile acid:sodium symporter activity | 1.41E-03 |
| 25 | GO:0003723: RNA binding | 1.55E-03 |
| 26 | GO:0004519: endonuclease activity | 1.64E-03 |
| 27 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.69E-03 |
| 28 | GO:0043495: protein anchor | 1.89E-03 |
| 29 | GO:0004392: heme oxygenase (decyclizing) activity | 1.89E-03 |
| 30 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.89E-03 |
| 31 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.89E-03 |
| 32 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.89E-03 |
| 33 | GO:0043015: gamma-tubulin binding | 1.89E-03 |
| 34 | GO:0016491: oxidoreductase activity | 2.26E-03 |
| 35 | GO:0003777: microtubule motor activity | 2.32E-03 |
| 36 | GO:0051011: microtubule minus-end binding | 2.41E-03 |
| 37 | GO:0042578: phosphoric ester hydrolase activity | 2.98E-03 |
| 38 | GO:0031177: phosphopantetheine binding | 2.98E-03 |
| 39 | GO:0004556: alpha-amylase activity | 2.98E-03 |
| 40 | GO:0004462: lactoylglutathione lyase activity | 2.98E-03 |
| 41 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.98E-03 |
| 42 | GO:0004332: fructose-bisphosphate aldolase activity | 2.98E-03 |
| 43 | GO:0048038: quinone binding | 3.09E-03 |
| 44 | GO:0015631: tubulin binding | 3.58E-03 |
| 45 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.58E-03 |
| 46 | GO:0000035: acyl binding | 3.58E-03 |
| 47 | GO:0008195: phosphatidate phosphatase activity | 3.58E-03 |
| 48 | GO:0019899: enzyme binding | 4.23E-03 |
| 49 | GO:0004033: aldo-keto reductase (NADP) activity | 4.90E-03 |
| 50 | GO:0043022: ribosome binding | 4.90E-03 |
| 51 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.90E-03 |
| 52 | GO:0005381: iron ion transmembrane transporter activity | 7.15E-03 |
| 53 | GO:0003993: acid phosphatase activity | 7.73E-03 |
| 54 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 8.82E-03 |
| 55 | GO:0000049: tRNA binding | 9.70E-03 |
| 56 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.03E-02 |
| 57 | GO:0000175: 3'-5'-exoribonuclease activity | 1.06E-02 |
| 58 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.16E-02 |
| 59 | GO:0004190: aspartic-type endopeptidase activity | 1.25E-02 |
| 60 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.29E-02 |
| 61 | GO:0003690: double-stranded DNA binding | 1.34E-02 |
| 62 | GO:0003714: transcription corepressor activity | 1.46E-02 |
| 63 | GO:0005528: FK506 binding | 1.46E-02 |
| 64 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.56E-02 |
| 65 | GO:0043424: protein histidine kinase binding | 1.56E-02 |
| 66 | GO:0022891: substrate-specific transmembrane transporter activity | 1.89E-02 |
| 67 | GO:0003727: single-stranded RNA binding | 2.01E-02 |
| 68 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.37E-02 |
| 69 | GO:0010181: FMN binding | 2.50E-02 |
| 70 | GO:0004872: receptor activity | 2.63E-02 |
| 71 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.97E-02 |
| 72 | GO:0005200: structural constituent of cytoskeleton | 3.30E-02 |
| 73 | GO:0016597: amino acid binding | 3.44E-02 |
| 74 | GO:0016168: chlorophyll binding | 3.73E-02 |
| 75 | GO:0008236: serine-type peptidase activity | 4.17E-02 |
| 76 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.33E-02 |
| 77 | GO:0008168: methyltransferase activity | 4.72E-02 |
| 78 | GO:0016788: hydrolase activity, acting on ester bonds | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042597: periplasmic space | 0.00E+00 |
| 2 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 3 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 8.23E-34 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.07E-13 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 6.76E-07 |
| 7 | GO:0009941: chloroplast envelope | 5.65E-06 |
| 8 | GO:0009570: chloroplast stroma | 8.33E-06 |
| 9 | GO:0009579: thylakoid | 8.18E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.99E-04 |
| 11 | GO:0055028: cortical microtubule | 5.52E-04 |
| 12 | GO:0008274: gamma-tubulin ring complex | 6.09E-04 |
| 13 | GO:0005874: microtubule | 6.74E-04 |
| 14 | GO:0009508: plastid chromosome | 8.26E-04 |
| 15 | GO:0030095: chloroplast photosystem II | 9.28E-04 |
| 16 | GO:0033281: TAT protein transport complex | 9.88E-04 |
| 17 | GO:0031977: thylakoid lumen | 1.26E-03 |
| 18 | GO:0042651: thylakoid membrane | 1.40E-03 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 1.40E-03 |
| 20 | GO:0000923: equatorial microtubule organizing center | 1.41E-03 |
| 21 | GO:0042646: plastid nucleoid | 1.41E-03 |
| 22 | GO:0009534: chloroplast thylakoid | 1.48E-03 |
| 23 | GO:0030660: Golgi-associated vesicle membrane | 1.89E-03 |
| 24 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 1.89E-03 |
| 25 | GO:0009526: plastid envelope | 1.89E-03 |
| 26 | GO:0030286: dynein complex | 1.89E-03 |
| 27 | GO:0055035: plastid thylakoid membrane | 2.41E-03 |
| 28 | GO:0072686: mitotic spindle | 2.41E-03 |
| 29 | GO:0019898: extrinsic component of membrane | 2.89E-03 |
| 30 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 2.98E-03 |
| 31 | GO:0010005: cortical microtubule, transverse to long axis | 3.58E-03 |
| 32 | GO:0009295: nucleoid | 3.98E-03 |
| 33 | GO:0009533: chloroplast stromal thylakoid | 4.23E-03 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 4.47E-03 |
| 35 | GO:0009538: photosystem I reaction center | 4.90E-03 |
| 36 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 4.90E-03 |
| 37 | GO:0042644: chloroplast nucleoid | 6.37E-03 |
| 38 | GO:0000922: spindle pole | 6.37E-03 |
| 39 | GO:0043231: intracellular membrane-bounded organelle | 6.91E-03 |
| 40 | GO:0016324: apical plasma membrane | 7.97E-03 |
| 41 | GO:0005819: spindle | 8.08E-03 |
| 42 | GO:0005765: lysosomal membrane | 8.82E-03 |
| 43 | GO:0090404: pollen tube tip | 8.82E-03 |
| 44 | GO:0005938: cell cortex | 1.06E-02 |
| 45 | GO:0009574: preprophase band | 1.06E-02 |
| 46 | GO:0005875: microtubule associated complex | 1.35E-02 |
| 47 | GO:0031969: chloroplast membrane | 1.47E-02 |
| 48 | GO:0009532: plastid stroma | 1.67E-02 |
| 49 | GO:0009706: chloroplast inner membrane | 1.84E-02 |
| 50 | GO:0005871: kinesin complex | 2.13E-02 |
| 51 | GO:0010287: plastoglobule | 2.19E-02 |
| 52 | GO:0009523: photosystem II | 2.63E-02 |
| 53 | GO:0031225: anchored component of membrane | 2.75E-02 |
| 54 | GO:0005778: peroxisomal membrane | 3.30E-02 |
| 55 | GO:0010319: stromule | 3.30E-02 |
| 56 | GO:0015934: large ribosomal subunit | 4.79E-02 |