Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G06744

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010312: detoxification of zinc ion0.00E+00
2GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
3GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
4GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
5GO:0009264: deoxyribonucleotide catabolic process0.00E+00
6GO:0030149: sphingolipid catabolic process0.00E+00
7GO:0019320: hexose catabolic process0.00E+00
8GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
9GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
10GO:0010299: detoxification of cobalt ion0.00E+00
11GO:0009651: response to salt stress6.53E-07
12GO:0055114: oxidation-reduction process1.66E-06
13GO:0006869: lipid transport5.06E-06
14GO:0010043: response to zinc ion2.93E-05
15GO:0009058: biosynthetic process2.94E-05
16GO:0042744: hydrogen peroxide catabolic process3.50E-05
17GO:0006564: L-serine biosynthetic process3.81E-05
18GO:0006097: glyoxylate cycle3.81E-05
19GO:0006099: tricarboxylic acid cycle3.83E-05
20GO:0006102: isocitrate metabolic process1.35E-04
21GO:0030163: protein catabolic process1.64E-04
22GO:0009820: alkaloid metabolic process1.75E-04
23GO:0010365: positive regulation of ethylene biosynthetic process1.75E-04
24GO:1901349: glucosinolate transport1.75E-04
25GO:1901430: positive regulation of syringal lignin biosynthetic process1.75E-04
26GO:0090449: phloem glucosinolate loading1.75E-04
27GO:0042964: thioredoxin reduction1.75E-04
28GO:0015812: gamma-aminobutyric acid transport1.75E-04
29GO:0019605: butyrate metabolic process1.75E-04
30GO:0006083: acetate metabolic process1.75E-04
31GO:1990542: mitochondrial transmembrane transport1.75E-04
32GO:0006979: response to oxidative stress2.83E-04
33GO:0012501: programmed cell death3.86E-04
34GO:0006820: anion transport3.86E-04
35GO:0006123: mitochondrial electron transport, cytochrome c to oxygen3.96E-04
36GO:2000379: positive regulation of reactive oxygen species metabolic process3.96E-04
37GO:0051788: response to misfolded protein3.96E-04
38GO:0006101: citrate metabolic process3.96E-04
39GO:0015786: UDP-glucose transport3.96E-04
40GO:0019752: carboxylic acid metabolic process3.96E-04
41GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine3.96E-04
42GO:0071497: cellular response to freezing3.96E-04
43GO:1990069: stomatal opening3.96E-04
44GO:0006807: nitrogen compound metabolic process4.39E-04
45GO:0002237: response to molecule of bacterial origin4.96E-04
46GO:0006511: ubiquitin-dependent protein catabolic process5.05E-04
47GO:0042343: indole glucosinolate metabolic process5.54E-04
48GO:0009617: response to bacterium5.94E-04
49GO:0015783: GDP-fucose transport6.47E-04
50GO:0015692: lead ion transport6.47E-04
51GO:0008652: cellular amino acid biosynthetic process6.47E-04
52GO:0046417: chorismate metabolic process6.47E-04
53GO:0046686: response to cadmium ion7.64E-04
54GO:0048511: rhythmic process8.23E-04
55GO:0098542: defense response to other organism8.23E-04
56GO:0015992: proton transport8.23E-04
57GO:0009311: oligosaccharide metabolic process9.23E-04
58GO:0072334: UDP-galactose transmembrane transport9.23E-04
59GO:0009647: skotomorphogenesis9.23E-04
60GO:0010148: transpiration9.23E-04
61GO:0010255: glucose mediated signaling pathway9.23E-04
62GO:0001676: long-chain fatty acid metabolic process9.23E-04
63GO:0009413: response to flooding9.23E-04
64GO:0051603: proteolysis involved in cellular protein catabolic process9.37E-04
65GO:0009735: response to cytokinin1.04E-03
66GO:0051365: cellular response to potassium ion starvation1.22E-03
67GO:0010363: regulation of plant-type hypersensitive response1.22E-03
68GO:0061088: regulation of sequestering of zinc ion1.22E-03
69GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter1.22E-03
70GO:1902183: regulation of shoot apical meristem development1.56E-03
71GO:0009697: salicylic acid biosynthetic process1.56E-03
72GO:0043248: proteasome assembly1.91E-03
73GO:0006828: manganese ion transport1.91E-03
74GO:0009228: thiamine biosynthetic process1.91E-03
75GO:0002238: response to molecule of fungal origin1.91E-03
76GO:0015691: cadmium ion transport1.91E-03
77GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.30E-03
78GO:0046835: carbohydrate phosphorylation2.30E-03
79GO:0010019: chloroplast-nucleus signaling pathway2.30E-03
80GO:0098869: cellular oxidant detoxification2.70E-03
81GO:0048528: post-embryonic root development2.70E-03
82GO:0006744: ubiquinone biosynthetic process2.70E-03
83GO:1900056: negative regulation of leaf senescence2.70E-03
84GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.70E-03
85GO:0050829: defense response to Gram-negative bacterium2.70E-03
86GO:1900057: positive regulation of leaf senescence2.70E-03
87GO:0010150: leaf senescence2.77E-03
88GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline3.13E-03
89GO:0009642: response to light intensity3.13E-03
90GO:0006875: cellular metal ion homeostasis3.13E-03
91GO:0031540: regulation of anthocyanin biosynthetic process3.13E-03
92GO:0009813: flavonoid biosynthetic process3.19E-03
93GO:0006972: hyperosmotic response3.58E-03
94GO:0019430: removal of superoxide radicals3.58E-03
95GO:0006367: transcription initiation from RNA polymerase II promoter3.58E-03
96GO:0009414: response to water deprivation4.02E-03
97GO:0015780: nucleotide-sugar transport4.05E-03
98GO:0098656: anion transmembrane transport4.05E-03
99GO:0046685: response to arsenic-containing substance4.05E-03
100GO:0006754: ATP biosynthetic process4.05E-03
101GO:0090332: stomatal closure4.54E-03
102GO:0006631: fatty acid metabolic process4.56E-03
103GO:0006032: chitin catabolic process5.05E-03
104GO:0009611: response to wounding5.41E-03
105GO:0009636: response to toxic substance5.56E-03
106GO:0009682: induced systemic resistance5.58E-03
107GO:0072593: reactive oxygen species metabolic process5.58E-03
108GO:0009073: aromatic amino acid family biosynthetic process5.58E-03
109GO:0000272: polysaccharide catabolic process5.58E-03
110GO:0016485: protein processing5.58E-03
111GO:0008361: regulation of cell size6.13E-03
112GO:0009725: response to hormone6.70E-03
113GO:0006829: zinc II ion transport6.70E-03
114GO:0010102: lateral root morphogenesis6.70E-03
115GO:0006096: glycolytic process7.88E-03
116GO:0090351: seedling development7.89E-03
117GO:0045454: cell redox homeostasis7.98E-03
118GO:0019762: glucosinolate catabolic process8.51E-03
119GO:0009624: response to nematode9.49E-03
120GO:0008299: isoprenoid biosynthetic process9.80E-03
121GO:0009751: response to salicylic acid1.02E-02
122GO:0030245: cellulose catabolic process1.12E-02
123GO:0016226: iron-sulfur cluster assembly1.12E-02
124GO:0009753: response to jasmonic acid1.14E-02
125GO:0009625: response to insect1.19E-02
126GO:0010089: xylem development1.26E-02
127GO:0010584: pollen exine formation1.26E-02
128GO:0006817: phosphate ion transport1.26E-02
129GO:0009561: megagametogenesis1.26E-02
130GO:0010118: stomatal movement1.41E-02
131GO:0015991: ATP hydrolysis coupled proton transport1.41E-02
132GO:0042631: cellular response to water deprivation1.41E-02
133GO:0006520: cellular amino acid metabolic process1.49E-02
134GO:0006662: glycerol ether metabolic process1.49E-02
135GO:0010182: sugar mediated signaling pathway1.49E-02
136GO:0006413: translational initiation1.53E-02
137GO:0009737: response to abscisic acid1.56E-02
138GO:0040008: regulation of growth1.57E-02
139GO:0048825: cotyledon development1.64E-02
140GO:0009749: response to glucose1.64E-02
141GO:0055072: iron ion homeostasis1.64E-02
142GO:0071554: cell wall organization or biogenesis1.72E-02
143GO:0010193: response to ozone1.72E-02
144GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.84E-02
145GO:0019760: glucosinolate metabolic process1.98E-02
146GO:0010029: regulation of seed germination2.33E-02
147GO:0009409: response to cold2.39E-02
148GO:0016049: cell growth2.61E-02
149GO:0006810: transport2.69E-02
150GO:0006811: ion transport2.90E-02
151GO:0009723: response to ethylene2.95E-02
152GO:0010119: regulation of stomatal movement3.00E-02
153GO:0009853: photorespiration3.20E-02
154GO:0034599: cellular response to oxidative stress3.31E-02
155GO:0046777: protein autophosphorylation3.38E-02
156GO:0044550: secondary metabolite biosynthetic process3.44E-02
157GO:0030001: metal ion transport3.52E-02
158GO:0042542: response to hydrogen peroxide3.73E-02
159GO:0008283: cell proliferation3.84E-02
160GO:0009926: auxin polar transport3.84E-02
161GO:0008643: carbohydrate transport4.06E-02
162GO:0007275: multicellular organism development4.12E-02
163GO:0006855: drug transmembrane transport4.28E-02
164GO:0009846: pollen germination4.51E-02
165GO:0009408: response to heat4.65E-02
166GO:0009809: lignin biosynthetic process4.74E-02
167GO:0009736: cytokinin-activated signaling pathway4.74E-02
168GO:0048364: root development4.85E-02
169GO:0006857: oligopeptide transport4.97E-02
RankGO TermAdjusted P value
1GO:0016229: steroid dehydrogenase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
4GO:0070401: NADP+ binding0.00E+00
5GO:0003796: lysozyme activity0.00E+00
6GO:0004573: mannosyl-oligosaccharide glucosidase activity0.00E+00
7GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
8GO:0004298: threonine-type endopeptidase activity1.15E-06
9GO:0004617: phosphoglycerate dehydrogenase activity1.48E-06
10GO:0008289: lipid binding2.08E-05
11GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity5.65E-05
12GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity5.65E-05
13GO:0015103: inorganic anion transmembrane transporter activity1.05E-04
14GO:0015288: porin activity1.35E-04
15GO:0004033: aldo-keto reductase (NADP) activity1.35E-04
16GO:0004601: peroxidase activity1.38E-04
17GO:0008308: voltage-gated anion channel activity1.69E-04
18GO:0003987: acetate-CoA ligase activity1.75E-04
19GO:0010013: N-1-naphthylphthalamic acid binding1.75E-04
20GO:0004558: alpha-1,4-glucosidase activity1.75E-04
21GO:0047760: butyrate-CoA ligase activity1.75E-04
22GO:0015185: gamma-aminobutyric acid transmembrane transporter activity1.75E-04
23GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor1.75E-04
24GO:0090448: glucosinolate:proton symporter activity1.75E-04
25GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity1.75E-04
26GO:0020037: heme binding2.04E-04
27GO:0008233: peptidase activity2.06E-04
28GO:0004618: phosphoglycerate kinase activity3.96E-04
29GO:0004047: aminomethyltransferase activity3.96E-04
30GO:0003994: aconitate hydratase activity3.96E-04
31GO:0050347: trans-octaprenyltranstransferase activity3.96E-04
32GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity3.96E-04
33GO:0004340: glucokinase activity3.96E-04
34GO:0004106: chorismate mutase activity3.96E-04
35GO:0019172: glyoxalase III activity3.96E-04
36GO:0008517: folic acid transporter activity3.96E-04
37GO:0005507: copper ion binding5.54E-04
38GO:0008253: 5'-nucleotidase activity6.47E-04
39GO:0004148: dihydrolipoyl dehydrogenase activity6.47E-04
40GO:0005457: GDP-fucose transmembrane transporter activity6.47E-04
41GO:0051287: NAD binding7.87E-04
42GO:0017077: oxidative phosphorylation uncoupler activity9.23E-04
43GO:0001872: (1->3)-beta-D-glucan binding9.23E-04
44GO:0019201: nucleotide kinase activity9.23E-04
45GO:0004449: isocitrate dehydrogenase (NAD+) activity9.23E-04
46GO:0004108: citrate (Si)-synthase activity9.23E-04
47GO:0008106: alcohol dehydrogenase (NADP+) activity9.23E-04
48GO:0005460: UDP-glucose transmembrane transporter activity9.23E-04
49GO:0019158: mannokinase activity1.22E-03
50GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.22E-03
51GO:0008022: protein C-terminus binding1.22E-03
52GO:0005536: glucose binding1.22E-03
53GO:0004659: prenyltransferase activity1.22E-03
54GO:0004396: hexokinase activity1.22E-03
55GO:0004791: thioredoxin-disulfide reductase activity1.42E-03
56GO:0005459: UDP-galactose transmembrane transporter activity1.56E-03
57GO:0015562: efflux transmembrane transporter activity1.91E-03
58GO:0016208: AMP binding1.91E-03
59GO:0016688: L-ascorbate peroxidase activity1.91E-03
60GO:0004866: endopeptidase inhibitor activity1.91E-03
61GO:0008200: ion channel inhibitor activity1.91E-03
62GO:0030170: pyridoxal phosphate binding2.11E-03
63GO:0016597: amino acid binding2.21E-03
64GO:0004017: adenylate kinase activity2.30E-03
65GO:0102391: decanoate--CoA ligase activity2.30E-03
66GO:0004656: procollagen-proline 4-dioxygenase activity2.30E-03
67GO:0016831: carboxy-lyase activity2.70E-03
68GO:0005338: nucleotide-sugar transmembrane transporter activity2.70E-03
69GO:0004467: long-chain fatty acid-CoA ligase activity2.70E-03
70GO:0008865: fructokinase activity3.13E-03
71GO:0008135: translation factor activity, RNA binding3.58E-03
72GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.84E-03
73GO:0000989: transcription factor activity, transcription factor binding4.05E-03
74GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.05E-03
75GO:0008422: beta-glucosidase activity4.20E-03
76GO:0005384: manganese ion transmembrane transporter activity4.54E-03
77GO:0016844: strictosidine synthase activity4.54E-03
78GO:0046872: metal ion binding4.88E-03
79GO:0003824: catalytic activity4.93E-03
80GO:0004568: chitinase activity5.05E-03
81GO:0004161: dimethylallyltranstransferase activity5.58E-03
82GO:0004177: aminopeptidase activity5.58E-03
83GO:0008559: xenobiotic-transporting ATPase activity5.58E-03
84GO:0004867: serine-type endopeptidase inhibitor activity7.89E-03
85GO:0004190: aspartic-type endopeptidase activity7.89E-03
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.97E-03
87GO:0031418: L-ascorbic acid binding9.15E-03
88GO:0005385: zinc ion transmembrane transporter activity9.15E-03
89GO:0008134: transcription factor binding9.15E-03
90GO:0008324: cation transmembrane transporter activity9.80E-03
91GO:0008810: cellulase activity1.19E-02
92GO:0008514: organic anion transmembrane transporter activity1.26E-02
93GO:0047134: protein-disulfide reductase activity1.33E-02
94GO:0046873: metal ion transmembrane transporter activity1.49E-02
95GO:0016853: isomerase activity1.56E-02
96GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.89E-02
97GO:0003743: translation initiation factor activity1.93E-02
98GO:0016413: O-acetyltransferase activity2.15E-02
99GO:0051213: dioxygenase activity2.24E-02
100GO:0000287: magnesium ion binding2.50E-02
101GO:0102483: scopolin beta-glucosidase activity2.52E-02
102GO:0030247: polysaccharide binding2.52E-02
103GO:0043565: sequence-specific DNA binding2.66E-02
104GO:0004222: metalloendopeptidase activity2.90E-02
105GO:0050897: cobalt ion binding3.00E-02
106GO:0051539: 4 iron, 4 sulfur cluster binding3.52E-02
107GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.08E-02
RankGO TermAdjusted P value
1GO:0005774: vacuolar membrane9.72E-15
2GO:0000502: proteasome complex2.16E-10
3GO:0005773: vacuole1.97E-07
4GO:0005829: cytosol3.20E-07
5GO:0005839: proteasome core complex1.15E-06
6GO:0009506: plasmodesma3.71E-05
7GO:0005741: mitochondrial outer membrane4.66E-05
8GO:0046930: pore complex1.69E-04
9GO:0045252: oxoglutarate dehydrogenase complex1.75E-04
10GO:0005618: cell wall1.99E-04
11GO:0008541: proteasome regulatory particle, lid subcomplex3.36E-04
12GO:0005759: mitochondrial matrix3.90E-04
13GO:0009536: plastid4.48E-04
14GO:0046861: glyoxysomal membrane6.47E-04
15GO:0005838: proteasome regulatory particle6.47E-04
16GO:0005794: Golgi apparatus1.04E-03
17GO:0022626: cytosolic ribosome1.13E-03
18GO:0016471: vacuolar proton-transporting V-type ATPase complex1.22E-03
19GO:0005777: peroxisome1.55E-03
20GO:0009707: chloroplast outer membrane3.04E-03
21GO:0009514: glyoxysome3.58E-03
22GO:0019773: proteasome core complex, alpha-subunit complex3.58E-03
23GO:0005576: extracellular region4.74E-03
24GO:0005750: mitochondrial respiratory chain complex III7.28E-03
25GO:0005783: endoplasmic reticulum7.56E-03
26GO:0016020: membrane8.42E-03
27GO:0005758: mitochondrial intermembrane space9.15E-03
28GO:0070469: respiratory chain9.80E-03
29GO:0071944: cell periphery1.89E-02
30GO:0005739: mitochondrion2.40E-02
31GO:0005737: cytoplasm2.92E-02
32GO:0000325: plant-type vacuole3.00E-02
33GO:0015934: large ribosomal subunit3.00E-02
34GO:0009507: chloroplast3.62E-02
35GO:0031225: anchored component of membrane3.75E-02
36GO:0048046: apoplast3.82E-02
37GO:0005886: plasma membrane4.06E-02
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Gene type



Gene DE type