co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G05090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006114: glycerol biosynthetic process	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
10	GO:0015979: photosynthesis	2.90E-10
11	GO:0010196: nonphotochemical quenching	1.21E-09
12	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-09
13	GO:0018298: protein-chromophore linkage	8.64E-08
14	GO:0009642: response to light intensity	4.83E-07
15	GO:0090391: granum assembly	1.89E-06
16	GO:0010136: ureide catabolic process	1.89E-06
17	GO:0006000: fructose metabolic process	1.89E-06
18	GO:0010027: thylakoid membrane organization	2.21E-06
19	GO:0009773: photosynthetic electron transport in photosystem I	2.48E-06
20	GO:0006145: purine nucleobase catabolic process	4.47E-06
21	GO:0006021: inositol biosynthetic process	8.50E-06
22	GO:0010114: response to red light	1.14E-05
23	GO:0010189: vitamin E biosynthetic process	3.05E-05
24	GO:0009645: response to low light intensity stimulus	4.14E-05
25	GO:0006002: fructose 6-phosphate metabolic process	6.86E-05
26	GO:0009657: plastid organization	6.86E-05
27	GO:0010206: photosystem II repair	8.49E-05
28	GO:0015995: chlorophyll biosynthetic process	9.15E-05
29	GO:0071277: cellular response to calcium ion	9.69E-05
30	GO:0043609: regulation of carbon utilization	9.69E-05
31	GO:0010218: response to far red light	1.23E-04
32	GO:0043085: positive regulation of catalytic activity	1.44E-04
33	GO:0009637: response to blue light	1.50E-04
34	GO:0034599: cellular response to oxidative stress	1.60E-04
35	GO:0019253: reductive pentose-phosphate cycle	2.19E-04
36	GO:0010207: photosystem II assembly	2.19E-04
37	GO:0010042: response to manganese ion	2.28E-04
38	GO:0000256: allantoin catabolic process	2.28E-04
39	GO:0097054: L-glutamate biosynthetic process	2.28E-04
40	GO:0006729: tetrahydrobiopterin biosynthetic process	2.28E-04
41	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.28E-04
42	GO:0009644: response to high light intensity	2.39E-04
43	GO:0016117: carotenoid biosynthetic process	5.25E-04
44	GO:0006537: glutamate biosynthetic process	5.46E-04
45	GO:0009052: pentose-phosphate shunt, non-oxidative branch	5.46E-04
46	GO:0006020: inositol metabolic process	5.46E-04
47	GO:0006662: glycerol ether metabolic process	6.09E-04
48	GO:0006546: glycine catabolic process	7.26E-04
49	GO:0010109: regulation of photosynthesis	7.26E-04
50	GO:0019676: ammonia assimilation cycle	7.26E-04
51	GO:0006109: regulation of carbohydrate metabolic process	7.26E-04
52	GO:0015994: chlorophyll metabolic process	7.26E-04
53	GO:0006413: translational initiation	9.14E-04
54	GO:0010236: plastoquinone biosynthetic process	9.17E-04
55	GO:0016123: xanthophyll biosynthetic process	9.17E-04
56	GO:0046855: inositol phosphate dephosphorylation	1.12E-03
57	GO:0050665: hydrogen peroxide biosynthetic process	1.12E-03
58	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.12E-03
59	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.12E-03
60	GO:0016311: dephosphorylation	1.30E-03
61	GO:0009854: oxidative photosynthetic carbon pathway	1.34E-03
62	GO:0071470: cellular response to osmotic stress	1.34E-03
63	GO:0030026: cellular manganese ion homeostasis	1.57E-03
64	GO:0009769: photosynthesis, light harvesting in photosystem II	1.57E-03
65	GO:0009853: photorespiration	1.72E-03
66	GO:0006605: protein targeting	1.81E-03
67	GO:0009704: de-etiolation	1.81E-03
68	GO:0016559: peroxisome fission	1.81E-03
69	GO:0071482: cellular response to light stimulus	2.07E-03
70	GO:0090333: regulation of stomatal closure	2.33E-03
71	GO:0055114: oxidation-reduction process	2.37E-03
72	GO:0006855: drug transmembrane transport	2.57E-03
73	GO:0045454: cell redox homeostasis	2.82E-03
74	GO:0006415: translational termination	3.20E-03
75	GO:0006790: sulfur compound metabolic process	3.50E-03
76	GO:0006006: glucose metabolic process	3.82E-03
77	GO:0006094: gluconeogenesis	3.82E-03
78	GO:0009767: photosynthetic electron transport chain	3.82E-03
79	GO:0005986: sucrose biosynthetic process	3.82E-03
80	GO:0010020: chloroplast fission	4.15E-03
81	GO:0009793: embryo development ending in seed dormancy	4.29E-03
82	GO:0006396: RNA processing	4.33E-03
83	GO:0046688: response to copper ion	4.49E-03
84	GO:0046854: phosphatidylinositol phosphorylation	4.49E-03
85	GO:0006825: copper ion transport	5.55E-03
86	GO:0008299: isoprenoid biosynthetic process	5.55E-03
87	GO:0009269: response to desiccation	5.93E-03
88	GO:0009561: megagametogenesis	7.10E-03
89	GO:0006814: sodium ion transport	8.79E-03
90	GO:0009646: response to absence of light	8.79E-03
91	GO:0019252: starch biosynthetic process	9.23E-03
92	GO:0008654: phospholipid biosynthetic process	9.23E-03
93	GO:0010090: trichome morphogenesis	1.06E-02
94	GO:0009658: chloroplast organization	1.12E-02
95	GO:0051607: defense response to virus	1.20E-02
96	GO:0006499: N-terminal protein myristoylation	1.62E-02
97	GO:0007568: aging	1.68E-02
98	GO:0016051: carbohydrate biosynthetic process	1.79E-02
99	GO:0042742: defense response to bacterium	1.86E-02
100	GO:0032259: methylation	1.97E-02
101	GO:0042542: response to hydrogen peroxide	2.08E-02
102	GO:0009744: response to sucrose	2.14E-02
103	GO:0006812: cation transport	2.52E-02
104	GO:0006364: rRNA processing	2.65E-02
105	GO:0006417: regulation of translation	2.85E-02
106	GO:0006096: glycolytic process	2.99E-02
107	GO:0043086: negative regulation of catalytic activity	2.99E-02
108	GO:0009735: response to cytokinin	3.34E-02
109	GO:0009416: response to light stimulus	3.65E-02
110	GO:0016036: cellular response to phosphate starvation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
4	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
7	GO:0010486: manganese:proton antiporter activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0047652: allantoate deiminase activity	0.00E+00
11	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
12	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
13	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
14	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
15	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
16	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
17	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
18	GO:0031409: pigment binding	7.47E-10
19	GO:0016168: chlorophyll binding	4.80E-08
20	GO:0046872: metal ion binding	7.64E-05
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	9.69E-05
22	GO:0016041: glutamate synthase (ferredoxin) activity	9.69E-05
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.69E-05
24	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	9.69E-05
25	GO:0004008: copper-exporting ATPase activity	9.69E-05
26	GO:0008047: enzyme activator activity	1.23E-04
27	GO:0031072: heat shock protein binding	1.93E-04
28	GO:0019200: carbohydrate kinase activity	2.28E-04
29	GO:0010291: carotene beta-ring hydroxylase activity	2.28E-04
30	GO:0047746: chlorophyllase activity	2.28E-04
31	GO:0004047: aminomethyltransferase activity	2.28E-04
32	GO:0052832: inositol monophosphate 3-phosphatase activity	2.28E-04
33	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.28E-04
34	GO:0008934: inositol monophosphate 1-phosphatase activity	2.28E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	2.28E-04
36	GO:0004512: inositol-3-phosphate synthase activity	2.28E-04
37	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.28E-04
38	GO:0004751: ribose-5-phosphate isomerase activity	3.80E-04
39	GO:0030267: glyoxylate reductase (NADP) activity	3.80E-04
40	GO:0070402: NADPH binding	3.80E-04
41	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.80E-04
42	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.80E-04
43	GO:0047134: protein-disulfide reductase activity	5.25E-04
44	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.46E-04
45	GO:0004792: thiosulfate sulfurtransferase activity	5.46E-04
46	GO:0016149: translation release factor activity, codon specific	5.46E-04
47	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	5.46E-04
48	GO:0008508: bile acid:sodium symporter activity	5.46E-04
49	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	5.46E-04
50	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	5.46E-04
51	GO:0004791: thioredoxin-disulfide reductase activity	6.54E-04
52	GO:0008891: glycolate oxidase activity	7.26E-04
53	GO:0008453: alanine-glyoxylate transaminase activity	7.26E-04
54	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.45E-04
55	GO:0051538: 3 iron, 4 sulfur cluster binding	9.17E-04
56	GO:0042578: phosphoric ester hydrolase activity	1.12E-03
57	GO:2001070: starch binding	1.12E-03
58	GO:0004017: adenylate kinase activity	1.34E-03
59	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.34E-03
60	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.34E-03
61	GO:0015238: drug transmembrane transporter activity	1.44E-03
62	GO:0005375: copper ion transmembrane transporter activity	2.07E-03
63	GO:0003747: translation release factor activity	2.33E-03
64	GO:0005384: manganese ion transmembrane transporter activity	2.61E-03
65	GO:0051287: NAD binding	2.67E-03
66	GO:0016787: hydrolase activity	3.75E-03
67	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.82E-03
68	GO:0051082: unfolded protein binding	4.20E-03
69	GO:0015035: protein disulfide oxidoreductase activity	4.33E-03
70	GO:0004857: enzyme inhibitor activity	5.19E-03
71	GO:0005528: FK506 binding	5.19E-03
72	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.39E-03
73	GO:0008324: cation transmembrane transporter activity	5.55E-03
74	GO:0015297: antiporter activity	6.91E-03
75	GO:0003756: protein disulfide isomerase activity	7.10E-03
76	GO:0003727: single-stranded RNA binding	7.10E-03
77	GO:0003743: translation initiation factor activity	8.46E-03
78	GO:0016853: isomerase activity	8.79E-03
79	GO:0010181: FMN binding	8.79E-03
80	GO:0042802: identical protein binding	9.20E-03
81	GO:0008483: transaminase activity	1.16E-02
82	GO:0008237: metallopeptidase activity	1.16E-02
83	GO:0004721: phosphoprotein phosphatase activity	1.41E-02
84	GO:0005525: GTP binding	1.43E-02
85	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.46E-02
86	GO:0030145: manganese ion binding	1.68E-02
87	GO:0003746: translation elongation factor activity	1.79E-02
88	GO:0003993: acid phosphatase activity	1.85E-02
89	GO:0050661: NADP binding	1.96E-02
90	GO:0003924: GTPase activity	2.06E-02
91	GO:0005215: transporter activity	2.12E-02
92	GO:0043621: protein self-association	2.27E-02
93	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.39E-02
94	GO:0016491: oxidoreductase activity	2.63E-02
95	GO:0020037: heme binding	3.30E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.36E-40
3	GO:0009534: chloroplast thylakoid	3.97E-33
4	GO:0009535: chloroplast thylakoid membrane	9.32E-31
5	GO:0009941: chloroplast envelope	5.19E-21
6	GO:0009570: chloroplast stroma	1.13E-20
7	GO:0009579: thylakoid	4.04E-15
8	GO:0009543: chloroplast thylakoid lumen	8.28E-11
9	GO:0009522: photosystem I	9.62E-09
10	GO:0031969: chloroplast membrane	1.17E-07
11	GO:0031977: thylakoid lumen	2.69E-07
12	GO:0010287: plastoglobule	3.01E-06
13	GO:0030076: light-harvesting complex	6.15E-06
14	GO:0009782: photosystem I antenna complex	9.69E-05
15	GO:0009783: photosystem II antenna complex	9.69E-05
16	GO:0016020: membrane	1.38E-04
17	GO:0030093: chloroplast photosystem I	2.28E-04
18	GO:0009654: photosystem II oxygen evolving complex	3.41E-04
19	GO:0009523: photosystem II	6.99E-04
20	GO:0019898: extrinsic component of membrane	6.99E-04
21	GO:0009517: PSII associated light-harvesting complex II	7.26E-04
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.33E-03
23	GO:0048046: apoplast	2.77E-03
24	GO:0030095: chloroplast photosystem II	4.15E-03
25	GO:0005623: cell	5.39E-03
26	GO:0016021: integral component of membrane	5.44E-03
27	GO:0042651: thylakoid membrane	5.55E-03
28	GO:0005770: late endosome	8.35E-03
29	GO:0005777: peroxisome	9.07E-03
30	GO:0009707: chloroplast outer membrane	1.51E-02
31	GO:0031902: late endosome membrane	2.02E-02
32	GO:0009706: chloroplast inner membrane	3.41E-02
33	GO:0022626: cytosolic ribosome	3.50E-02
34	GO:0005759: mitochondrial matrix	4.70E-02