co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	6.71E-06
4	GO:0010021: amylopectin biosynthetic process	1.75E-05
5	GO:0000023: maltose metabolic process	1.48E-04
6	GO:0006431: methionyl-tRNA aminoacylation	1.48E-04
7	GO:0000025: maltose catabolic process	1.48E-04
8	GO:0005980: glycogen catabolic process	1.48E-04
9	GO:0015979: photosynthesis	1.72E-04
10	GO:0005983: starch catabolic process	3.05E-04
11	GO:0031648: protein destabilization	3.38E-04
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.38E-04
13	GO:0071712: ER-associated misfolded protein catabolic process	3.38E-04
14	GO:0032527: protein exit from endoplasmic reticulum	3.38E-04
15	GO:0005976: polysaccharide metabolic process	3.38E-04
16	GO:0006094: gluconeogenesis	3.47E-04
17	GO:0009266: response to temperature stimulus	3.92E-04
18	GO:0010623: programmed cell death involved in cell development	5.54E-04
19	GO:0006000: fructose metabolic process	5.54E-04
20	GO:0032940: secretion by cell	5.54E-04
21	GO:0010017: red or far-red light signaling pathway	7.15E-04
22	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.93E-04
23	GO:1902358: sulfate transmembrane transport	7.93E-04
24	GO:0010731: protein glutathionylation	7.93E-04
25	GO:0010037: response to carbon dioxide	1.05E-03
26	GO:0006808: regulation of nitrogen utilization	1.05E-03
27	GO:0015976: carbon utilization	1.05E-03
28	GO:0010023: proanthocyanidin biosynthetic process	1.05E-03
29	GO:0009765: photosynthesis, light harvesting	1.05E-03
30	GO:0010600: regulation of auxin biosynthetic process	1.05E-03
31	GO:0010508: positive regulation of autophagy	1.05E-03
32	GO:2000122: negative regulation of stomatal complex development	1.05E-03
33	GO:0015846: polyamine transport	1.05E-03
34	GO:0019252: starch biosynthetic process	1.21E-03
35	GO:0006461: protein complex assembly	1.33E-03
36	GO:0006310: DNA recombination	1.56E-03
37	GO:0000470: maturation of LSU-rRNA	1.63E-03
38	GO:0009913: epidermal cell differentiation	1.63E-03
39	GO:0010190: cytochrome b6f complex assembly	1.63E-03
40	GO:0009955: adaxial/abaxial pattern specification	1.96E-03
41	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.96E-03
42	GO:0009645: response to low light intensity stimulus	2.30E-03
43	GO:0010161: red light signaling pathway	2.30E-03
44	GO:0008272: sulfate transport	2.30E-03
45	GO:0009704: de-etiolation	2.66E-03
46	GO:0010928: regulation of auxin mediated signaling pathway	2.66E-03
47	GO:0005978: glycogen biosynthetic process	2.66E-03
48	GO:0009631: cold acclimation	2.77E-03
49	GO:0032544: plastid translation	3.04E-03
50	GO:0017004: cytochrome complex assembly	3.04E-03
51	GO:0006002: fructose 6-phosphate metabolic process	3.04E-03
52	GO:0009657: plastid organization	3.04E-03
53	GO:0009735: response to cytokinin	3.17E-03
54	GO:0006783: heme biosynthetic process	3.44E-03
55	GO:0051865: protein autoubiquitination	3.44E-03
56	GO:0005982: starch metabolic process	3.86E-03
57	GO:0042761: very long-chain fatty acid biosynthetic process	3.86E-03
58	GO:0009644: response to high light intensity	4.22E-03
59	GO:0006782: protoporphyrinogen IX biosynthetic process	4.29E-03
60	GO:0009409: response to cold	4.67E-03
61	GO:0009750: response to fructose	4.73E-03
62	GO:0006415: translational termination	4.73E-03
63	GO:0002213: defense response to insect	5.20E-03
64	GO:0009718: anthocyanin-containing compound biosynthetic process	5.68E-03
65	GO:0005986: sucrose biosynthetic process	5.68E-03
66	GO:0010102: lateral root morphogenesis	5.68E-03
67	GO:0045454: cell redox homeostasis	5.88E-03
68	GO:0055114: oxidation-reduction process	5.99E-03
69	GO:0019762: glucosinolate catabolic process	7.20E-03
70	GO:0010025: wax biosynthetic process	7.20E-03
71	GO:0006281: DNA repair	7.67E-03
72	GO:0006289: nucleotide-excision repair	7.74E-03
73	GO:0009768: photosynthesis, light harvesting in photosystem I	8.29E-03
74	GO:0006418: tRNA aminoacylation for protein translation	8.29E-03
75	GO:0007017: microtubule-based process	8.29E-03
76	GO:0003333: amino acid transmembrane transport	8.85E-03
77	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.43E-03
78	GO:0001944: vasculature development	1.00E-02
79	GO:0009686: gibberellin biosynthetic process	1.00E-02
80	GO:0010089: xylem development	1.06E-02
81	GO:0006284: base-excision repair	1.06E-02
82	GO:0006979: response to oxidative stress	1.07E-02
83	GO:0042335: cuticle development	1.19E-02
84	GO:0048825: cotyledon development	1.39E-02
85	GO:0000302: response to reactive oxygen species	1.45E-02
86	GO:0019760: glucosinolate metabolic process	1.67E-02
87	GO:0010027: thylakoid membrane organization	1.89E-02
88	GO:0042254: ribosome biogenesis	2.04E-02
89	GO:0015995: chlorophyll biosynthetic process	2.12E-02
90	GO:0016311: dephosphorylation	2.20E-02
91	GO:0018298: protein-chromophore linkage	2.28E-02
92	GO:0009817: defense response to fungus, incompatible interaction	2.28E-02
93	GO:0048481: plant ovule development	2.28E-02
94	GO:0000160: phosphorelay signal transduction system	2.36E-02
95	GO:0010218: response to far red light	2.45E-02
96	GO:0010119: regulation of stomatal movement	2.53E-02
97	GO:0009637: response to blue light	2.70E-02
98	GO:0034599: cellular response to oxidative stress	2.79E-02
99	GO:0010114: response to red light	3.23E-02
100	GO:0009640: photomorphogenesis	3.23E-02
101	GO:0008283: cell proliferation	3.23E-02
102	GO:0006869: lipid transport	3.27E-02
103	GO:0006855: drug transmembrane transport	3.61E-02
104	GO:0006629: lipid metabolic process	3.67E-02
105	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.71E-02
106	GO:0009414: response to water deprivation	3.73E-02
107	GO:0009753: response to jasmonic acid	3.93E-02
108	GO:0009585: red, far-red light phototransduction	4.00E-02
109	GO:0006096: glycolytic process	4.50E-02
110	GO:0043086: negative regulation of catalytic activity	4.50E-02
111	GO:0009740: gibberellic acid mediated signaling pathway	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0004602: glutathione peroxidase activity	6.00E-05
5	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.48E-04
6	GO:0004825: methionine-tRNA ligase activity	1.48E-04
7	GO:0008184: glycogen phosphorylase activity	1.48E-04
8	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.48E-04
9	GO:0004853: uroporphyrinogen decarboxylase activity	1.48E-04
10	GO:0004134: 4-alpha-glucanotransferase activity	1.48E-04
11	GO:0004645: phosphorylase activity	1.48E-04
12	GO:0047372: acylglycerol lipase activity	2.65E-04
13	GO:0044390: ubiquitin-like protein conjugating enzyme binding	3.38E-04
14	GO:0010297: heteropolysaccharide binding	3.38E-04
15	GO:0033201: alpha-1,4-glucan synthase activity	3.38E-04
16	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.38E-04
17	GO:0008967: phosphoglycolate phosphatase activity	3.38E-04
18	GO:0018708: thiol S-methyltransferase activity	3.38E-04
19	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.38E-04
20	GO:0017108: 5'-flap endonuclease activity	5.54E-04
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.54E-04
22	GO:0043169: cation binding	5.54E-04
23	GO:0004373: glycogen (starch) synthase activity	5.54E-04
24	GO:0017150: tRNA dihydrouridine synthase activity	5.54E-04
25	GO:0016149: translation release factor activity, codon specific	7.93E-04
26	GO:0015203: polyamine transmembrane transporter activity	7.93E-04
27	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.05E-03
28	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.05E-03
29	GO:0019104: DNA N-glycosylase activity	1.05E-03
30	GO:0009011: starch synthase activity	1.05E-03
31	GO:0048038: quinone binding	1.29E-03
32	GO:0019843: rRNA binding	1.36E-03
33	GO:2001070: starch binding	1.63E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	1.63E-03
35	GO:0004130: cytochrome-c peroxidase activity	1.63E-03
36	GO:0009055: electron carrier activity	1.69E-03
37	GO:0004033: aldo-keto reductase (NADP) activity	2.66E-03
38	GO:0008271: secondary active sulfate transmembrane transporter activity	3.04E-03
39	GO:0003747: translation release factor activity	3.44E-03
40	GO:0015174: basic amino acid transmembrane transporter activity	3.86E-03
41	GO:0030234: enzyme regulator activity	4.29E-03
42	GO:0015293: symporter activity	4.38E-03
43	GO:0015116: sulfate transmembrane transporter activity	5.20E-03
44	GO:0004022: alcohol dehydrogenase (NAD) activity	5.68E-03
45	GO:0004089: carbonate dehydratase activity	5.68E-03
46	GO:0004565: beta-galactosidase activity	5.68E-03
47	GO:0031409: pigment binding	7.20E-03
48	GO:0015035: protein disulfide oxidoreductase activity	7.69E-03
49	GO:0004812: aminoacyl-tRNA ligase activity	1.13E-02
50	GO:0008289: lipid binding	1.17E-02
51	GO:0003713: transcription coactivator activity	1.25E-02
52	GO:0004518: nuclease activity	1.52E-02
53	GO:0000156: phosphorelay response regulator activity	1.59E-02
54	GO:0016491: oxidoreductase activity	1.60E-02
55	GO:0003684: damaged DNA binding	1.67E-02
56	GO:0043565: sequence-specific DNA binding	1.69E-02
57	GO:0005200: structural constituent of cytoskeleton	1.74E-02
58	GO:0016168: chlorophyll binding	1.97E-02
59	GO:0008375: acetylglucosaminyltransferase activity	2.04E-02
60	GO:0003735: structural constituent of ribosome	2.95E-02
61	GO:0004364: glutathione transferase activity	3.14E-02
62	GO:0051537: 2 iron, 2 sulfur cluster binding	3.42E-02
63	GO:0043621: protein self-association	3.42E-02
64	GO:0003924: GTPase activity	3.67E-02
65	GO:0044212: transcription regulatory region DNA binding	3.84E-02
66	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0009507: chloroplast	8.08E-14
3	GO:0009570: chloroplast stroma	3.54E-12
4	GO:0009535: chloroplast thylakoid membrane	1.04E-11
5	GO:0009941: chloroplast envelope	2.10E-09
6	GO:0009534: chloroplast thylakoid	2.56E-08
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.82E-06
8	GO:0009579: thylakoid	3.92E-06
9	GO:0010287: plastoglobule	1.29E-05
10	GO:0009501: amyloplast	1.04E-04
11	GO:0030093: chloroplast photosystem I	3.38E-04
12	GO:0031977: thylakoid lumen	4.13E-04
13	GO:0036513: Derlin-1 retrotranslocation complex	7.93E-04
14	GO:0009523: photosystem II	1.21E-03
15	GO:0055035: plastid thylakoid membrane	1.33E-03
16	GO:0030915: Smc5-Smc6 complex	1.33E-03
17	GO:0009543: chloroplast thylakoid lumen	1.36E-03
18	GO:0009295: nucleoid	1.65E-03
19	GO:0009533: chloroplast stromal thylakoid	2.30E-03
20	GO:0009538: photosystem I reaction center	2.66E-03
21	GO:0045298: tubulin complex	3.44E-03
22	GO:0009508: plastid chromosome	5.68E-03
23	GO:0030095: chloroplast photosystem II	6.17E-03
24	GO:0030076: light-harvesting complex	6.67E-03
25	GO:0042651: thylakoid membrane	8.29E-03
26	GO:0015935: small ribosomal subunit	8.85E-03
27	GO:0005840: ribosome	1.14E-02
28	GO:0009522: photosystem I	1.32E-02
29	GO:0010319: stromule	1.74E-02
30	GO:0015934: large ribosomal subunit	2.53E-02
31	GO:0009536: plastid	4.92E-02
32	GO:0005887: integral component of plasma membrane	4.96E-02