co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G04640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0016118: carotenoid catabolic process	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:0061635: regulation of protein complex stability	0.00E+00
8	GO:0015979: photosynthesis	1.61E-28
9	GO:0018298: protein-chromophore linkage	2.32E-18
10	GO:0009768: photosynthesis, light harvesting in photosystem I	2.17E-15
11	GO:0010207: photosystem II assembly	1.00E-11
12	GO:0010206: photosystem II repair	1.80E-08
13	GO:0006006: glucose metabolic process	1.15E-07
14	GO:0006094: gluconeogenesis	1.15E-07
15	GO:0019253: reductive pentose-phosphate cycle	1.54E-07
16	GO:0042549: photosystem II stabilization	2.55E-07
17	GO:0010218: response to far red light	4.13E-07
18	GO:0009637: response to blue light	6.04E-07
19	GO:0009409: response to cold	7.20E-07
20	GO:0009769: photosynthesis, light harvesting in photosystem II	7.37E-07
21	GO:0009645: response to low light intensity stimulus	7.37E-07
22	GO:0010196: nonphotochemical quenching	7.37E-07
23	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.42E-07
24	GO:0035304: regulation of protein dephosphorylation	9.42E-07
25	GO:0010114: response to red light	1.20E-06
26	GO:0032544: plastid translation	1.67E-06
27	GO:0010205: photoinhibition	3.25E-06
28	GO:0006000: fructose metabolic process	3.53E-06
29	GO:0006096: glycolytic process	4.09E-06
30	GO:0009773: photosynthetic electron transport in photosystem I	5.66E-06
31	GO:0019684: photosynthesis, light reaction	5.66E-06
32	GO:0015995: chlorophyll biosynthetic process	8.80E-06
33	GO:0009735: response to cytokinin	1.16E-05
34	GO:0019676: ammonia assimilation cycle	1.55E-05
35	GO:0009765: photosynthesis, light harvesting	1.55E-05
36	GO:0009644: response to high light intensity	3.49E-05
37	GO:0042742: defense response to bacterium	1.17E-04
38	GO:0006002: fructose 6-phosphate metabolic process	1.17E-04
39	GO:0043953: protein transport by the Tat complex	1.37E-04
40	GO:0051775: response to redox state	1.37E-04
41	GO:1904966: positive regulation of vitamin E biosynthetic process	1.37E-04
42	GO:0000481: maturation of 5S rRNA	1.37E-04
43	GO:1904964: positive regulation of phytol biosynthetic process	1.37E-04
44	GO:0065002: intracellular protein transmembrane transport	1.37E-04
45	GO:1902458: positive regulation of stomatal opening	1.37E-04
46	GO:0034337: RNA folding	1.37E-04
47	GO:0010362: negative regulation of anion channel activity by blue light	1.37E-04
48	GO:0010027: thylakoid membrane organization	1.44E-04
49	GO:0006098: pentose-phosphate shunt	1.44E-04
50	GO:0018119: peptidyl-cysteine S-nitrosylation	2.39E-04
51	GO:0005986: sucrose biosynthetic process	3.14E-04
52	GO:0016124: xanthophyll catabolic process	3.16E-04
53	GO:0019388: galactose catabolic process	3.16E-04
54	GO:0006432: phenylalanyl-tRNA aminoacylation	3.16E-04
55	GO:0097054: L-glutamate biosynthetic process	3.16E-04
56	GO:0010155: regulation of proton transport	3.16E-04
57	GO:0006729: tetrahydrobiopterin biosynthetic process	3.16E-04
58	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.16E-04
59	GO:0016121: carotene catabolic process	3.16E-04
60	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.16E-04
61	GO:0046686: response to cadmium ion	3.51E-04
62	GO:0009744: response to sucrose	4.03E-04
63	GO:0035436: triose phosphate transmembrane transport	5.20E-04
64	GO:0061077: chaperone-mediated protein folding	5.96E-04
65	GO:0009269: response to desiccation	5.96E-04
66	GO:0009416: response to light stimulus	6.71E-04
67	GO:0009590: detection of gravity	7.44E-04
68	GO:0009067: aspartate family amino acid biosynthetic process	7.44E-04
69	GO:0071484: cellular response to light intensity	7.44E-04
70	GO:0006107: oxaloacetate metabolic process	7.44E-04
71	GO:0006537: glutamate biosynthetic process	7.44E-04
72	GO:0006552: leucine catabolic process	9.85E-04
73	GO:0006546: glycine catabolic process	9.85E-04
74	GO:0015713: phosphoglycerate transport	9.85E-04
75	GO:0006734: NADH metabolic process	9.85E-04
76	GO:0006542: glutamine biosynthetic process	9.85E-04
77	GO:0015976: carbon utilization	9.85E-04
78	GO:0019464: glycine decarboxylation via glycine cleavage system	9.85E-04
79	GO:0006109: regulation of carbohydrate metabolic process	9.85E-04
80	GO:0045727: positive regulation of translation	9.85E-04
81	GO:0015994: chlorophyll metabolic process	9.85E-04
82	GO:0030104: water homeostasis	9.85E-04
83	GO:0009904: chloroplast accumulation movement	1.25E-03
84	GO:0010236: plastoquinone biosynthetic process	1.25E-03
85	GO:0045038: protein import into chloroplast thylakoid membrane	1.25E-03
86	GO:0016123: xanthophyll biosynthetic process	1.25E-03
87	GO:0009635: response to herbicide	1.53E-03
88	GO:0009643: photosynthetic acclimation	1.53E-03
89	GO:0050665: hydrogen peroxide biosynthetic process	1.53E-03
90	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.53E-03
91	GO:1901259: chloroplast rRNA processing	1.83E-03
92	GO:0009903: chloroplast avoidance movement	1.83E-03
93	GO:0010189: vitamin E biosynthetic process	1.83E-03
94	GO:0009854: oxidative photosynthetic carbon pathway	1.83E-03
95	GO:0009088: threonine biosynthetic process	1.83E-03
96	GO:0009955: adaxial/abaxial pattern specification	1.83E-03
97	GO:0016311: dephosphorylation	2.07E-03
98	GO:0022904: respiratory electron transport chain	2.15E-03
99	GO:0032508: DNA duplex unwinding	2.49E-03
100	GO:2000070: regulation of response to water deprivation	2.49E-03
101	GO:0048564: photosystem I assembly	2.49E-03
102	GO:0005978: glycogen biosynthetic process	2.49E-03
103	GO:0009642: response to light intensity	2.49E-03
104	GO:0010119: regulation of stomatal movement	2.51E-03
105	GO:0015996: chlorophyll catabolic process	2.85E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	2.85E-03
107	GO:0090333: regulation of stomatal closure	3.22E-03
108	GO:0009638: phototropism	3.60E-03
109	GO:0055114: oxidation-reduction process	4.38E-03
110	GO:0009089: lysine biosynthetic process via diaminopimelate	4.42E-03
111	GO:0009073: aromatic amino acid family biosynthetic process	4.42E-03
112	GO:0043085: positive regulation of catalytic activity	4.42E-03
113	GO:0000272: polysaccharide catabolic process	4.42E-03
114	GO:0009750: response to fructose	4.42E-03
115	GO:0006810: transport	4.51E-03
116	GO:0045037: protein import into chloroplast stroma	4.85E-03
117	GO:0005983: starch catabolic process	4.85E-03
118	GO:0009785: blue light signaling pathway	5.30E-03
119	GO:0006108: malate metabolic process	5.30E-03
120	GO:0009767: photosynthetic electron transport chain	5.30E-03
121	GO:0006302: double-strand break repair	5.76E-03
122	GO:0005985: sucrose metabolic process	6.23E-03
123	GO:0051321: meiotic cell cycle	8.26E-03
124	GO:0071215: cellular response to abscisic acid stimulus	9.35E-03
125	GO:0009561: megagametogenesis	9.92E-03
126	GO:0016117: carotenoid biosynthetic process	1.05E-02
127	GO:0042631: cellular response to water deprivation	1.11E-02
128	GO:0007623: circadian rhythm	1.17E-02
129	GO:0006662: glycerol ether metabolic process	1.17E-02
130	GO:0010182: sugar mediated signaling pathway	1.17E-02
131	GO:0006814: sodium ion transport	1.23E-02
132	GO:0009646: response to absence of light	1.23E-02
133	GO:0019252: starch biosynthetic process	1.29E-02
134	GO:0009791: post-embryonic development	1.29E-02
135	GO:0071554: cell wall organization or biogenesis	1.36E-02
136	GO:0006412: translation	1.44E-02
137	GO:0009567: double fertilization forming a zygote and endosperm	1.55E-02
138	GO:0009658: chloroplast organization	1.82E-02
139	GO:0000160: phosphorelay signal transduction system	2.20E-02
140	GO:0009813: flavonoid biosynthetic process	2.20E-02
141	GO:0007568: aging	2.36E-02
142	GO:0009853: photorespiration	2.51E-02
143	GO:0034599: cellular response to oxidative stress	2.60E-02
144	GO:0006099: tricarboxylic acid cycle	2.60E-02
145	GO:0045454: cell redox homeostasis	2.70E-02
146	GO:0009737: response to abscisic acid	2.81E-02
147	GO:0006631: fatty acid metabolic process	2.84E-02
148	GO:0032259: methylation	3.18E-02
149	GO:0006364: rRNA processing	3.72E-02
150	GO:0043086: negative regulation of catalytic activity	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0010242: oxygen evolving activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
4	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	0.00E+00
5	GO:0048039: ubiquinone binding	0.00E+00
6	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
7	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
8	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
9	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
10	GO:0031409: pigment binding	7.87E-16
11	GO:0016168: chlorophyll binding	7.55E-15
12	GO:0008266: poly(U) RNA binding	1.54E-07
13	GO:0019843: rRNA binding	5.43E-07
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.42E-07
15	GO:0016851: magnesium chelatase activity	8.27E-06
16	GO:0003959: NADPH dehydrogenase activity	2.54E-05
17	GO:0004332: fructose-bisphosphate aldolase activity	3.80E-05
18	GO:0046872: metal ion binding	8.87E-05
19	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.37E-04
20	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.37E-04
21	GO:0008746: NAD(P)+ transhydrogenase activity	1.37E-04
22	GO:0016041: glutamate synthase (ferredoxin) activity	1.37E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.37E-04
24	GO:0005515: protein binding	2.26E-04
25	GO:0031072: heat shock protein binding	3.14E-04
26	GO:0016630: protochlorophyllide reductase activity	3.16E-04
27	GO:0004826: phenylalanine-tRNA ligase activity	3.16E-04
28	GO:0004614: phosphoglucomutase activity	3.16E-04
29	GO:0010291: carotene beta-ring hydroxylase activity	3.16E-04
30	GO:0047746: chlorophyllase activity	3.16E-04
31	GO:0010297: heteropolysaccharide binding	3.16E-04
32	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.16E-04
33	GO:0005509: calcium ion binding	4.80E-04
34	GO:0005528: FK506 binding	4.93E-04
35	GO:0005504: fatty acid binding	5.20E-04
36	GO:0071917: triose-phosphate transmembrane transporter activity	5.20E-04
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.20E-04
38	GO:0004324: ferredoxin-NADP+ reductase activity	5.20E-04
39	GO:0003913: DNA photolyase activity	5.20E-04
40	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	7.44E-04
41	GO:0009882: blue light photoreceptor activity	7.44E-04
42	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	7.44E-04
43	GO:0008508: bile acid:sodium symporter activity	7.44E-04
44	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	7.44E-04
45	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	7.44E-04
46	GO:0004072: aspartate kinase activity	7.44E-04
47	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.44E-04
48	GO:0045430: chalcone isomerase activity	9.85E-04
49	GO:0043495: protein anchor	9.85E-04
50	GO:0008891: glycolate oxidase activity	9.85E-04
51	GO:0015120: phosphoglycerate transmembrane transporter activity	9.85E-04
52	GO:0010181: FMN binding	1.03E-03
53	GO:0051538: 3 iron, 4 sulfur cluster binding	1.25E-03
54	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.25E-03
55	GO:0004356: glutamate-ammonia ligase activity	1.25E-03
56	GO:0016615: malate dehydrogenase activity	1.53E-03
57	GO:0030060: L-malate dehydrogenase activity	1.83E-03
58	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.83E-03
59	GO:0019899: enzyme binding	2.15E-03
60	GO:0009881: photoreceptor activity	2.15E-03
61	GO:0042802: identical protein binding	2.45E-03
62	GO:0003746: translation elongation factor activity	2.75E-03
63	GO:0008135: translation factor activity, RNA binding	2.85E-03
64	GO:0050661: NADP binding	3.13E-03
65	GO:0008047: enzyme activator activity	4.00E-03
66	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.12E-03
67	GO:0051287: NAD binding	4.27E-03
68	GO:0000049: tRNA binding	4.85E-03
69	GO:0004089: carbonate dehydratase activity	5.30E-03
70	GO:0000155: phosphorelay sensor kinase activity	5.30E-03
71	GO:0051082: unfolded protein binding	6.76E-03
72	GO:0004857: enzyme inhibitor activity	7.22E-03
73	GO:0003735: structural constituent of ribosome	7.65E-03
74	GO:0004176: ATP-dependent peptidase activity	8.26E-03
75	GO:0008408: 3'-5' exonuclease activity	8.26E-03
76	GO:0022891: substrate-specific transmembrane transporter activity	9.35E-03
77	GO:0003756: protein disulfide isomerase activity	9.92E-03
78	GO:0047134: protein-disulfide reductase activity	1.05E-02
79	GO:0050662: coenzyme binding	1.23E-02
80	GO:0004791: thioredoxin-disulfide reductase activity	1.23E-02
81	GO:0016491: oxidoreductase activity	1.38E-02
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.49E-02
83	GO:0008237: metallopeptidase activity	1.62E-02
84	GO:0016597: amino acid binding	1.69E-02
85	GO:0016413: O-acetyltransferase activity	1.69E-02
86	GO:0000287: magnesium ion binding	1.78E-02
87	GO:0004721: phosphoprotein phosphatase activity	1.98E-02
88	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.05E-02
89	GO:0004222: metalloendopeptidase activity	2.28E-02
90	GO:0030145: manganese ion binding	2.36E-02
91	GO:0003993: acid phosphatase activity	2.60E-02
92	GO:0051539: 4 iron, 4 sulfur cluster binding	2.76E-02
93	GO:0004722: protein serine/threonine phosphatase activity	2.96E-02
94	GO:0005198: structural molecule activity	3.27E-02
95	GO:0015035: protein disulfide oxidoreductase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009783: photosystem II antenna complex	0.00E+00
5	GO:0009507: chloroplast	2.31E-61
6	GO:0009535: chloroplast thylakoid membrane	9.58E-57
7	GO:0009534: chloroplast thylakoid	7.16E-54
8	GO:0009941: chloroplast envelope	5.44E-48
9	GO:0009579: thylakoid	1.26E-42
10	GO:0009570: chloroplast stroma	2.06E-40
11	GO:0010287: plastoglobule	3.56E-22
12	GO:0030095: chloroplast photosystem II	2.50E-16
13	GO:0048046: apoplast	4.81E-16
14	GO:0031977: thylakoid lumen	2.30E-15
15	GO:0009543: chloroplast thylakoid lumen	7.92E-15
16	GO:0009522: photosystem I	5.16E-14
17	GO:0030076: light-harvesting complex	1.54E-11
18	GO:0009654: photosystem II oxygen evolving complex	4.78E-11
19	GO:0009523: photosystem II	6.25E-10
20	GO:0019898: extrinsic component of membrane	6.25E-10
21	GO:0010319: stromule	1.86E-09
22	GO:0009538: photosystem I reaction center	6.60E-09
23	GO:0009517: PSII associated light-harvesting complex II	5.65E-08
24	GO:0016020: membrane	8.45E-08
25	GO:0042651: thylakoid membrane	4.31E-07
26	GO:0031969: chloroplast membrane	6.37E-07
27	GO:0010007: magnesium chelatase complex	3.53E-06
28	GO:0031361: integral component of thylakoid membrane	1.37E-04
29	GO:0009782: photosystem I antenna complex	1.37E-04
30	GO:0000791: euchromatin	1.37E-04
31	GO:0030870: Mre11 complex	3.16E-04
32	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.16E-04
33	GO:0033281: TAT protein transport complex	5.20E-04
34	GO:0009528: plastid inner membrane	5.20E-04
35	GO:0005960: glycine cleavage complex	7.44E-04
36	GO:0009527: plastid outer membrane	9.85E-04
37	GO:0009898: cytoplasmic side of plasma membrane	9.85E-04
38	GO:0055035: plastid thylakoid membrane	1.25E-03
39	GO:0000795: synaptonemal complex	1.25E-03
40	GO:0005759: mitochondrial matrix	1.60E-03
41	GO:0009986: cell surface	2.15E-03
42	GO:0009533: chloroplast stromal thylakoid	2.15E-03
43	GO:0031305: integral component of mitochondrial inner membrane	2.49E-03
44	GO:0005840: ribosome	2.50E-03
45	GO:0022626: cytosolic ribosome	2.91E-03
46	GO:0005763: mitochondrial small ribosomal subunit	3.22E-03
47	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.22E-03
48	GO:0005740: mitochondrial envelope	4.00E-03
49	GO:0032040: small-subunit processome	4.85E-03
50	GO:0000312: plastid small ribosomal subunit	5.76E-03
51	GO:0009706: chloroplast inner membrane	6.76E-03
52	GO:0009532: plastid stroma	8.26E-03
53	GO:0015935: small ribosomal subunit	8.26E-03
54	GO:0016021: integral component of membrane	1.26E-02
55	GO:0000785: chromatin	1.42E-02
56	GO:0009707: chloroplast outer membrane	2.12E-02
57	GO:0015934: large ribosomal subunit	2.36E-02