Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G04330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090042: tubulin deacetylation0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:0080127: fruit septum development0.00E+00
4GO:1905177: tracheary element differentiation0.00E+00
5GO:0015727: lactate transport0.00E+00
6GO:0071474: cellular hyperosmotic response0.00E+00
7GO:1905421: regulation of plant organ morphogenesis0.00E+00
8GO:0002184: cytoplasmic translational termination0.00E+00
9GO:0030155: regulation of cell adhesion0.00E+00
10GO:0090706: specification of plant organ position0.00E+00
11GO:0000025: maltose catabolic process0.00E+00
12GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
13GO:0090627: plant epidermal cell differentiation0.00E+00
14GO:0090279: regulation of calcium ion import0.00E+00
15GO:0015979: photosynthesis1.28E-08
16GO:0005982: starch metabolic process8.23E-07
17GO:0005983: starch catabolic process2.39E-06
18GO:0030388: fructose 1,6-bisphosphate metabolic process6.76E-06
19GO:0032544: plastid translation2.15E-05
20GO:0006000: fructose metabolic process2.36E-05
21GO:0009735: response to cytokinin3.13E-05
22GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.16E-05
23GO:0009773: photosynthetic electron transport in photosystem I6.43E-05
24GO:0006094: gluconeogenesis9.74E-05
25GO:0015995: chlorophyll biosynthetic process1.56E-04
26GO:0010190: cytochrome b6f complex assembly2.03E-04
27GO:0010480: microsporocyte differentiation3.89E-04
28GO:0043007: maintenance of rDNA3.89E-04
29GO:0010028: xanthophyll cycle3.89E-04
30GO:0010450: inflorescence meristem growth3.89E-04
31GO:0000023: maltose metabolic process3.89E-04
32GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.89E-04
33GO:0000476: maturation of 4.5S rRNA3.89E-04
34GO:0000967: rRNA 5'-end processing3.89E-04
35GO:0005980: glycogen catabolic process3.89E-04
36GO:0006002: fructose 6-phosphate metabolic process5.43E-04
37GO:1901959: positive regulation of cutin biosynthetic process8.44E-04
38GO:0018026: peptidyl-lysine monomethylation8.44E-04
39GO:0090342: regulation of cell aging8.44E-04
40GO:0031648: protein destabilization8.44E-04
41GO:0016122: xanthophyll metabolic process8.44E-04
42GO:0006521: regulation of cellular amino acid metabolic process8.44E-04
43GO:0051262: protein tetramerization8.44E-04
44GO:0034470: ncRNA processing8.44E-04
45GO:0005976: polysaccharide metabolic process8.44E-04
46GO:0048829: root cap development8.94E-04
47GO:0010027: thylakoid membrane organization1.01E-03
48GO:0005986: sucrose biosynthetic process1.33E-03
49GO:0010102: lateral root morphogenesis1.33E-03
50GO:1904278: positive regulation of wax biosynthetic process1.37E-03
51GO:0010623: programmed cell death involved in cell development1.37E-03
52GO:0080055: low-affinity nitrate transport1.37E-03
53GO:0016050: vesicle organization1.37E-03
54GO:0045165: cell fate commitment1.37E-03
55GO:0048281: inflorescence morphogenesis1.37E-03
56GO:0006518: peptide metabolic process1.37E-03
57GO:0010148: transpiration1.97E-03
58GO:0010306: rhamnogalacturonan II biosynthetic process1.97E-03
59GO:0010731: protein glutathionylation1.97E-03
60GO:0009944: polarity specification of adaxial/abaxial axis2.08E-03
61GO:0003333: amino acid transmembrane transport2.52E-03
62GO:0061077: chaperone-mediated protein folding2.52E-03
63GO:0009409: response to cold2.53E-03
64GO:0051205: protein insertion into membrane2.65E-03
65GO:0010021: amylopectin biosynthetic process2.65E-03
66GO:0006808: regulation of nitrogen utilization2.65E-03
67GO:0006109: regulation of carbohydrate metabolic process2.65E-03
68GO:0015994: chlorophyll metabolic process2.65E-03
69GO:0015846: polyamine transport2.65E-03
70GO:0010600: regulation of auxin biosynthetic process2.65E-03
71GO:0045723: positive regulation of fatty acid biosynthetic process2.65E-03
72GO:0006552: leucine catabolic process2.65E-03
73GO:0010508: positive regulation of autophagy2.65E-03
74GO:0006810: transport3.07E-03
75GO:0045038: protein import into chloroplast thylakoid membrane3.40E-03
76GO:0006461: protein complex assembly3.40E-03
77GO:1902183: regulation of shoot apical meristem development3.40E-03
78GO:0010158: abaxial cell fate specification3.40E-03
79GO:0006465: signal peptide processing3.40E-03
80GO:0000304: response to singlet oxygen3.40E-03
81GO:0003006: developmental process involved in reproduction4.20E-03
82GO:0042549: photosystem II stabilization4.20E-03
83GO:0000470: maturation of LSU-rRNA4.20E-03
84GO:0009913: epidermal cell differentiation4.20E-03
85GO:1902456: regulation of stomatal opening4.20E-03
86GO:0019252: starch biosynthetic process4.76E-03
87GO:0006458: 'de novo' protein folding5.06E-03
88GO:1901259: chloroplast rRNA processing5.06E-03
89GO:0009955: adaxial/abaxial pattern specification5.06E-03
90GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.06E-03
91GO:0042372: phylloquinone biosynthetic process5.06E-03
92GO:0042026: protein refolding5.06E-03
93GO:1901657: glycosyl compound metabolic process5.81E-03
94GO:0022904: respiratory electron transport chain5.98E-03
95GO:0010103: stomatal complex morphogenesis5.98E-03
96GO:0010161: red light signaling pathway5.98E-03
97GO:0048437: floral organ development5.98E-03
98GO:0070370: cellular heat acclimation5.98E-03
99GO:0006353: DNA-templated transcription, termination6.95E-03
100GO:0009704: de-etiolation6.95E-03
101GO:0010928: regulation of auxin mediated signaling pathway6.95E-03
102GO:0005978: glycogen biosynthetic process6.95E-03
103GO:0080167: response to karrikin7.09E-03
104GO:0010093: specification of floral organ identity7.98E-03
105GO:0001558: regulation of cell growth7.98E-03
106GO:0009657: plastid organization7.98E-03
107GO:0048507: meristem development9.05E-03
108GO:0006783: heme biosynthetic process9.05E-03
109GO:0051865: protein autoubiquitination9.05E-03
110GO:2000024: regulation of leaf development9.05E-03
111GO:0016311: dephosphorylation9.18E-03
112GO:0005975: carbohydrate metabolic process9.22E-03
113GO:0009817: defense response to fungus, incompatible interaction9.66E-03
114GO:0042761: very long-chain fatty acid biosynthetic process1.02E-02
115GO:0042742: defense response to bacterium1.11E-02
116GO:0009631: cold acclimation1.12E-02
117GO:0006782: protoporphyrinogen IX biosynthetic process1.14E-02
118GO:0006415: translational termination1.26E-02
119GO:0009750: response to fructose1.26E-02
120GO:0048229: gametophyte development1.26E-02
121GO:0009684: indoleacetic acid biosynthetic process1.26E-02
122GO:0010015: root morphogenesis1.26E-02
123GO:0019684: photosynthesis, light reaction1.26E-02
124GO:0009089: lysine biosynthetic process via diaminopimelate1.26E-02
125GO:0009073: aromatic amino acid family biosynthetic process1.26E-02
126GO:0043085: positive regulation of catalytic activity1.26E-02
127GO:0034599: cellular response to oxidative stress1.28E-02
128GO:0010582: floral meristem determinacy1.39E-02
129GO:0008152: metabolic process1.48E-02
130GO:0010628: positive regulation of gene expression1.52E-02
131GO:0006006: glucose metabolic process1.52E-02
132GO:0010075: regulation of meristem growth1.52E-02
133GO:0009767: photosynthetic electron transport chain1.52E-02
134GO:0019253: reductive pentose-phosphate cycle1.65E-02
135GO:0009887: animal organ morphogenesis1.65E-02
136GO:0009266: response to temperature stimulus1.65E-02
137GO:0009934: regulation of meristem structural organization1.65E-02
138GO:0048467: gynoecium development1.65E-02
139GO:0010207: photosystem II assembly1.65E-02
140GO:0009933: meristem structural organization1.65E-02
141GO:0006508: proteolysis1.71E-02
142GO:0005985: sucrose metabolic process1.79E-02
143GO:0010025: wax biosynthetic process1.94E-02
144GO:0006289: nucleotide-excision repair2.08E-02
145GO:0009658: chloroplast organization2.11E-02
146GO:0055114: oxidation-reduction process2.22E-02
147GO:0007017: microtubule-based process2.24E-02
148GO:0051302: regulation of cell division2.24E-02
149GO:0016575: histone deacetylation2.24E-02
150GO:0006418: tRNA aminoacylation for protein translation2.24E-02
151GO:0019915: lipid storage2.39E-02
152GO:0031408: oxylipin biosynthetic process2.39E-02
153GO:0043086: negative regulation of catalytic activity2.53E-02
154GO:2000022: regulation of jasmonic acid mediated signaling pathway2.55E-02
155GO:0035428: hexose transmembrane transport2.55E-02
156GO:0019748: secondary metabolic process2.55E-02
157GO:0010017: red or far-red light signaling pathway2.55E-02
158GO:0001944: vasculature development2.71E-02
159GO:0009686: gibberellin biosynthetic process2.71E-02
160GO:0010089: xylem development2.88E-02
161GO:0006284: base-excision repair2.88E-02
162GO:0000413: protein peptidyl-prolyl isomerization3.22E-02
163GO:0048653: anther development3.22E-02
164GO:0006662: glycerol ether metabolic process3.40E-02
165GO:0048868: pollen tube development3.40E-02
166GO:0046323: glucose import3.40E-02
167GO:0010154: fruit development3.40E-02
168GO:0009646: response to absence of light3.58E-02
169GO:0048825: cotyledon development3.76E-02
170GO:0006869: lipid transport3.88E-02
171GO:0000302: response to reactive oxygen species3.95E-02
172GO:0032502: developmental process4.14E-02
173GO:0030163: protein catabolic process4.33E-02
174GO:0071281: cellular response to iron ion4.33E-02
175GO:0006629: lipid metabolic process4.48E-02
RankGO TermAdjusted P value
1GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
2GO:0043014: alpha-tubulin binding0.00E+00
3GO:0048039: ubiquinone binding0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0009899: ent-kaurene synthase activity0.00E+00
6GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
7GO:0047668: amygdalin beta-glucosidase activity0.00E+00
8GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
9GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
10GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
11GO:0015129: lactate transmembrane transporter activity0.00E+00
12GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
13GO:0046422: violaxanthin de-epoxidase activity0.00E+00
14GO:0043864: indoleacetamide hydrolase activity0.00E+00
15GO:0004134: 4-alpha-glucanotransferase activity0.00E+00
16GO:0051721: protein phosphatase 2A binding0.00E+00
17GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
18GO:0042903: tubulin deacetylase activity0.00E+00
19GO:0080082: esculin beta-glucosidase activity0.00E+00
20GO:0004567: beta-mannosidase activity0.00E+00
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.76E-06
22GO:0005528: FK506 binding8.96E-06
23GO:0016851: magnesium chelatase activity5.16E-05
24GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.84E-05
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.11E-05
26GO:2001070: starch binding2.03E-04
27GO:0019203: carbohydrate phosphatase activity3.89E-04
28GO:0004853: uroporphyrinogen decarboxylase activity3.89E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.89E-04
30GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.89E-04
31GO:0005227: calcium activated cation channel activity3.89E-04
32GO:0080079: cellobiose glucosidase activity3.89E-04
33GO:0008184: glycogen phosphorylase activity3.89E-04
34GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.89E-04
35GO:0004856: xylulokinase activity3.89E-04
36GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.89E-04
37GO:0004645: phosphorylase activity3.89E-04
38GO:0048038: quinone binding6.34E-04
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.44E-04
40GO:0016868: intramolecular transferase activity, phosphotransferases8.44E-04
41GO:0010297: heteropolysaccharide binding8.44E-04
42GO:0033201: alpha-1,4-glucan synthase activity8.44E-04
43GO:0018708: thiol S-methyltransferase activity8.44E-04
44GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.44E-04
45GO:0003844: 1,4-alpha-glucan branching enzyme activity8.44E-04
46GO:0047372: acylglycerol lipase activity1.03E-03
47GO:0004565: beta-galactosidase activity1.33E-03
48GO:0045174: glutathione dehydrogenase (ascorbate) activity1.37E-03
49GO:0080054: low-affinity nitrate transmembrane transporter activity1.37E-03
50GO:0004324: ferredoxin-NADP+ reductase activity1.37E-03
51GO:0043169: cation binding1.37E-03
52GO:0004373: glycogen (starch) synthase activity1.37E-03
53GO:0017150: tRNA dihydrouridine synthase activity1.37E-03
54GO:0019843: rRNA binding1.60E-03
55GO:0048487: beta-tubulin binding1.97E-03
56GO:0016149: translation release factor activity, codon specific1.97E-03
57GO:0015203: polyamine transmembrane transporter activity1.97E-03
58GO:0043023: ribosomal large subunit binding1.97E-03
59GO:0004857: enzyme inhibitor activity2.08E-03
60GO:0042277: peptide binding2.65E-03
61GO:0016279: protein-lysine N-methyltransferase activity2.65E-03
62GO:0010328: auxin influx transmembrane transporter activity2.65E-03
63GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.65E-03
64GO:0004506: squalene monooxygenase activity2.65E-03
65GO:0019199: transmembrane receptor protein kinase activity2.65E-03
66GO:0009011: starch synthase activity2.65E-03
67GO:0043621: protein self-association2.91E-03
68GO:0030570: pectate lyase activity3.01E-03
69GO:0004040: amidase activity3.40E-03
70GO:0008725: DNA-3-methyladenine glycosylase activity3.40E-03
71GO:0003959: NADPH dehydrogenase activity3.40E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor3.40E-03
73GO:0016208: AMP binding4.20E-03
74GO:0004332: fructose-bisphosphate aldolase activity4.20E-03
75GO:0004130: cytochrome-c peroxidase activity4.20E-03
76GO:0005261: cation channel activity5.06E-03
77GO:0004602: glutathione peroxidase activity5.06E-03
78GO:0051920: peroxiredoxin activity5.06E-03
79GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.06E-03
80GO:0004033: aldo-keto reductase (NADP) activity6.95E-03
81GO:0005337: nucleoside transmembrane transporter activity6.95E-03
82GO:0016209: antioxidant activity6.95E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.98E-03
84GO:0102483: scopolin beta-glucosidase activity8.71E-03
85GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.05E-03
86GO:0003747: translation release factor activity9.05E-03
87GO:0004252: serine-type endopeptidase activity9.19E-03
88GO:0015174: basic amino acid transmembrane transporter activity1.02E-02
89GO:0008047: enzyme activator activity1.14E-02
90GO:0044183: protein binding involved in protein folding1.26E-02
91GO:0008422: beta-glucosidase activity1.34E-02
92GO:0000976: transcription regulatory region sequence-specific DNA binding1.39E-02
93GO:0004022: alcohol dehydrogenase (NAD) activity1.52E-02
94GO:0004185: serine-type carboxypeptidase activity1.59E-02
95GO:0003735: structural constituent of ribosome1.64E-02
96GO:0004535: poly(A)-specific ribonuclease activity1.65E-02
97GO:0008266: poly(U) RNA binding1.65E-02
98GO:0051537: 2 iron, 2 sulfur cluster binding1.72E-02
99GO:0015293: symporter activity1.78E-02
100GO:0004190: aspartic-type endopeptidase activity1.79E-02
101GO:0016491: oxidoreductase activity1.88E-02
102GO:0004407: histone deacetylase activity2.08E-02
103GO:0008289: lipid binding2.10E-02
104GO:0033612: receptor serine/threonine kinase binding2.39E-02
105GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.62E-02
106GO:0022891: substrate-specific transmembrane transporter activity2.71E-02
107GO:0047134: protein-disulfide reductase activity3.05E-02
108GO:0004812: aminoacyl-tRNA ligase activity3.05E-02
109GO:0001085: RNA polymerase II transcription factor binding3.40E-02
110GO:0004791: thioredoxin-disulfide reductase activity3.58E-02
111GO:0005355: glucose transmembrane transporter activity3.58E-02
112GO:0016829: lyase activity4.12E-02
113GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.33E-02
114GO:0005200: structural constituent of cytoskeleton4.72E-02
115GO:0009055: electron carrier activity4.87E-02
116GO:0016597: amino acid binding4.92E-02
RankGO TermAdjusted P value
1GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009507: chloroplast1.64E-33
4GO:0009570: chloroplast stroma3.58E-23
5GO:0009535: chloroplast thylakoid membrane6.79E-22
6GO:0009534: chloroplast thylakoid7.87E-21
7GO:0009543: chloroplast thylakoid lumen4.65E-14
8GO:0009941: chloroplast envelope1.46E-09
9GO:0009579: thylakoid2.80E-09
10GO:0031977: thylakoid lumen4.93E-09
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.40E-07
12GO:0030095: chloroplast photosystem II4.28E-06
13GO:0009501: amyloplast1.51E-05
14GO:0010007: magnesium chelatase complex2.36E-05
15GO:0009654: photosystem II oxygen evolving complex2.19E-04
16GO:0005787: signal peptidase complex3.89E-04
17GO:0009344: nitrite reductase complex [NAD(P)H]3.89E-04
18GO:0009538: photosystem I reaction center4.44E-04
19GO:0019898: extrinsic component of membrane5.82E-04
20GO:0043036: starch grain8.44E-04
21GO:0010319: stromule8.73E-04
22GO:0009840: chloroplastic endopeptidase Clp complex5.06E-03
23GO:0009533: chloroplast stromal thylakoid5.98E-03
24GO:0009295: nucleoid6.57E-03
25GO:0031305: integral component of mitochondrial inner membrane6.95E-03
26GO:0010287: plastoglobule7.51E-03
27GO:0045298: tubulin complex9.05E-03
28GO:0005763: mitochondrial small ribosomal subunit9.05E-03
29GO:0048046: apoplast1.07E-02
30GO:0005740: mitochondrial envelope1.14E-02
31GO:0005840: ribosome1.21E-02
32GO:0009508: plastid chromosome1.52E-02
33GO:0043234: protein complex1.94E-02
34GO:0042651: thylakoid membrane2.24E-02
35GO:0009532: plastid stroma2.39E-02
36GO:0015935: small ribosomal subunit2.39E-02
37GO:0031969: chloroplast membrane2.77E-02
38GO:0009706: chloroplast inner membrane3.05E-02
39GO:0009523: photosystem II3.76E-02
40GO:0009536: plastid4.37E-02
41GO:0009505: plant-type cell wall4.52E-02
42GO:0005778: peroxisomal membrane4.72E-02
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Gene type



Gene DE type