co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G03460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
2	GO:2001142: nicotinate transport	0.00E+00
3	GO:0080050: regulation of seed development	0.00E+00
4	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
5	GO:0032497: detection of lipopolysaccharide	0.00E+00
6	GO:0032499: detection of peptidoglycan	0.00E+00
7	GO:2001143: N-methylnicotinate transport	0.00E+00
8	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
9	GO:0009560: embryo sac egg cell differentiation	0.00E+00
10	GO:0006468: protein phosphorylation	4.32E-09
11	GO:0010200: response to chitin	2.79E-07
12	GO:0006955: immune response	1.82E-06
13	GO:0048544: recognition of pollen	5.99E-06
14	GO:0006904: vesicle docking involved in exocytosis	1.39E-05
15	GO:0002679: respiratory burst involved in defense response	1.57E-05
16	GO:0006887: exocytosis	6.73E-05
17	GO:0010337: regulation of salicylic acid metabolic process	6.86E-05
18	GO:0032491: detection of molecule of fungal origin	1.98E-04
19	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.98E-04
20	GO:0051865: protein autoubiquitination	2.45E-04
21	GO:0008219: cell death	4.09E-04
22	GO:0010372: positive regulation of gibberellin biosynthetic process	4.43E-04
23	GO:0052542: defense response by callose deposition	4.43E-04
24	GO:0010115: regulation of abscisic acid biosynthetic process	4.43E-04
25	GO:0010271: regulation of chlorophyll catabolic process	4.43E-04
26	GO:0010155: regulation of proton transport	4.43E-04
27	GO:0045087: innate immune response	5.54E-04
28	GO:0070588: calcium ion transmembrane transport	6.52E-04
29	GO:0007166: cell surface receptor signaling pathway	7.18E-04
30	GO:0010447: response to acidic pH	7.22E-04
31	GO:0080168: abscisic acid transport	7.22E-04
32	GO:0051176: positive regulation of sulfur metabolic process	7.22E-04
33	GO:0045793: positive regulation of cell size	7.22E-04
34	GO:0030100: regulation of endocytosis	1.03E-03
35	GO:0009399: nitrogen fixation	1.03E-03
36	GO:0033014: tetrapyrrole biosynthetic process	1.03E-03
37	GO:0015696: ammonium transport	1.03E-03
38	GO:0048530: fruit morphogenesis	1.03E-03
39	GO:0071323: cellular response to chitin	1.03E-03
40	GO:0006817: phosphate ion transport	1.24E-03
41	GO:0072488: ammonium transmembrane transport	1.37E-03
42	GO:0006536: glutamate metabolic process	1.37E-03
43	GO:0010107: potassium ion import	1.37E-03
44	GO:0071219: cellular response to molecule of bacterial origin	1.37E-03
45	GO:0001709: cell fate determination	1.37E-03
46	GO:1902347: response to strigolactone	1.37E-03
47	GO:0046777: protein autophosphorylation	1.73E-03
48	GO:0009435: NAD biosynthetic process	1.74E-03
49	GO:0009164: nucleoside catabolic process	1.74E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	1.74E-03
51	GO:0035556: intracellular signal transduction	1.80E-03
52	GO:0009742: brassinosteroid mediated signaling pathway	1.85E-03
53	GO:0006796: phosphate-containing compound metabolic process	2.14E-03
54	GO:0006751: glutathione catabolic process	2.14E-03
55	GO:0009737: response to abscisic acid	2.19E-03
56	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.57E-03
57	GO:0080113: regulation of seed growth	2.57E-03
58	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.91E-03
59	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.03E-03
60	GO:0010044: response to aluminum ion	3.03E-03
61	GO:1900150: regulation of defense response to fungus	3.51E-03
62	GO:0006402: mRNA catabolic process	3.51E-03
63	GO:2000070: regulation of response to water deprivation	3.51E-03
64	GO:0045010: actin nucleation	3.51E-03
65	GO:0048658: anther wall tapetum development	3.51E-03
66	GO:0009932: cell tip growth	4.02E-03
67	GO:0098656: anion transmembrane transport	4.54E-03
68	GO:0046685: response to arsenic-containing substance	4.54E-03
69	GO:0034765: regulation of ion transmembrane transport	4.54E-03
70	GO:0090333: regulation of stomatal closure	4.54E-03
71	GO:0006783: heme biosynthetic process	4.54E-03
72	GO:0009060: aerobic respiration	4.54E-03
73	GO:0006779: porphyrin-containing compound biosynthetic process	5.10E-03
74	GO:0010380: regulation of chlorophyll biosynthetic process	5.10E-03
75	GO:0008202: steroid metabolic process	5.10E-03
76	GO:0042742: defense response to bacterium	5.63E-03
77	GO:0006782: protoporphyrinogen IX biosynthetic process	5.67E-03
78	GO:0019538: protein metabolic process	5.67E-03
79	GO:0048829: root cap development	5.67E-03
80	GO:0010015: root morphogenesis	6.27E-03
81	GO:0006952: defense response	6.58E-03
82	GO:0009611: response to wounding	6.98E-03
83	GO:0055046: microgametogenesis	7.52E-03
84	GO:0034605: cellular response to heat	8.19E-03
85	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.20E-03
86	GO:0071732: cellular response to nitric oxide	8.87E-03
87	GO:0046854: phosphatidylinositol phosphorylation	8.87E-03
88	GO:0016310: phosphorylation	9.07E-03
89	GO:0009626: plant-type hypersensitive response	9.94E-03
90	GO:0009863: salicylic acid mediated signaling pathway	1.03E-02
91	GO:0009624: response to nematode	1.12E-02
92	GO:0061077: chaperone-mediated protein folding	1.18E-02
93	GO:0016998: cell wall macromolecule catabolic process	1.18E-02
94	GO:0046686: response to cadmium ion	1.22E-02
95	GO:0030245: cellulose catabolic process	1.26E-02
96	GO:0010017: red or far-red light signaling pathway	1.26E-02
97	GO:0016226: iron-sulfur cluster assembly	1.26E-02
98	GO:0030433: ubiquitin-dependent ERAD pathway	1.26E-02
99	GO:0009408: response to heat	1.29E-02
100	GO:0071215: cellular response to abscisic acid stimulus	1.34E-02
101	GO:0009686: gibberellin biosynthetic process	1.34E-02
102	GO:0071369: cellular response to ethylene stimulus	1.34E-02
103	GO:0009306: protein secretion	1.42E-02
104	GO:0010089: xylem development	1.42E-02
105	GO:0042147: retrograde transport, endosome to Golgi	1.50E-02
106	GO:0042631: cellular response to water deprivation	1.59E-02
107	GO:0042391: regulation of membrane potential	1.59E-02
108	GO:0009960: endosperm development	1.67E-02
109	GO:0009958: positive gravitropism	1.67E-02
110	GO:0009749: response to glucose	1.85E-02
111	GO:0009414: response to water deprivation	1.89E-02
112	GO:0002229: defense response to oomycetes	1.94E-02
113	GO:0010193: response to ozone	1.94E-02
114	GO:0010150: leaf senescence	1.95E-02
115	GO:0006979: response to oxidative stress	1.98E-02
116	GO:0031047: gene silencing by RNA	2.04E-02
117	GO:0071281: cellular response to iron ion	2.13E-02
118	GO:0010090: trichome morphogenesis	2.13E-02
119	GO:1901657: glycosyl compound metabolic process	2.13E-02
120	GO:0010468: regulation of gene expression	2.33E-02
121	GO:0007267: cell-cell signaling	2.33E-02
122	GO:0001666: response to hypoxia	2.53E-02
123	GO:0009615: response to virus	2.53E-02
124	GO:0009816: defense response to bacterium, incompatible interaction	2.63E-02
125	GO:0009555: pollen development	2.66E-02
126	GO:0015995: chlorophyll biosynthetic process	2.84E-02
127	GO:0048573: photoperiodism, flowering	2.84E-02
128	GO:0016049: cell growth	2.94E-02
129	GO:0009817: defense response to fungus, incompatible interaction	3.05E-02
130	GO:0048767: root hair elongation	3.16E-02
131	GO:0010311: lateral root formation	3.16E-02
132	GO:0006970: response to osmotic stress	3.25E-02
133	GO:0048527: lateral root development	3.38E-02
134	GO:0009637: response to blue light	3.61E-02
135	GO:0016567: protein ubiquitination	3.77E-02
136	GO:0006897: endocytosis	4.08E-02
137	GO:0051707: response to other organism	4.32E-02
138	GO:0006855: drug transmembrane transport	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0090416: nicotinate transporter activity	0.00E+00
2	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
3	GO:0008987: quinolinate synthetase A activity	0.00E+00
4	GO:0005522: profilin binding	0.00E+00
5	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
6	GO:2001080: chitosan binding	0.00E+00
7	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
8	GO:0030621: U4 snRNA binding	0.00E+00
9	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
10	GO:0016301: kinase activity	6.03E-08
11	GO:0005524: ATP binding	6.63E-08
12	GO:0004672: protein kinase activity	9.75E-06
13	GO:0004674: protein serine/threonine kinase activity	1.21E-05
14	GO:0047631: ADP-ribose diphosphatase activity	4.65E-05
15	GO:0015085: calcium ion transmembrane transporter activity	1.98E-04
16	GO:0090440: abscisic acid transporter activity	1.98E-04
17	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	1.98E-04
18	GO:0004103: choline kinase activity	4.43E-04
19	GO:0008883: glutamyl-tRNA reductase activity	4.43E-04
20	GO:0005388: calcium-transporting ATPase activity	5.18E-04
21	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.26E-04
22	GO:0003840: gamma-glutamyltransferase activity	7.22E-04
23	GO:0036374: glutathione hydrolase activity	7.22E-04
24	GO:0004383: guanylate cyclase activity	7.22E-04
25	GO:0005516: calmodulin binding	8.68E-04
26	GO:0001653: peptide receptor activity	1.03E-03
27	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.03E-03
28	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	1.03E-03
29	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.03E-03
30	GO:0004351: glutamate decarboxylase activity	1.03E-03
31	GO:0043015: gamma-tubulin binding	1.37E-03
32	GO:0019199: transmembrane receptor protein kinase activity	1.37E-03
33	GO:0018685: alkane 1-monooxygenase activity	1.74E-03
34	GO:0002020: protease binding	1.74E-03
35	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.74E-03
36	GO:0004356: glutamate-ammonia ligase activity	1.74E-03
37	GO:0017070: U6 snRNA binding	1.74E-03
38	GO:0035673: oligopeptide transmembrane transporter activity	2.14E-03
39	GO:0000210: NAD+ diphosphatase activity	2.14E-03
40	GO:0016462: pyrophosphatase activity	2.14E-03
41	GO:0008519: ammonium transmembrane transporter activity	2.14E-03
42	GO:0051020: GTPase binding	2.57E-03
43	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.57E-03
44	GO:0005242: inward rectifier potassium channel activity	2.57E-03
45	GO:0030246: carbohydrate binding	2.75E-03
46	GO:0004427: inorganic diphosphatase activity	3.03E-03
47	GO:0008143: poly(A) binding	3.03E-03
48	GO:0004143: diacylglycerol kinase activity	3.03E-03
49	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.51E-03
50	GO:0008142: oxysterol binding	4.02E-03
51	GO:0003951: NAD+ kinase activity	4.02E-03
52	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.15E-03
53	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.67E-03
54	GO:0008047: enzyme activator activity	5.67E-03
55	GO:0015198: oligopeptide transporter activity	6.89E-03
56	GO:0019888: protein phosphatase regulator activity	7.52E-03
57	GO:0005315: inorganic phosphate transmembrane transporter activity	7.52E-03
58	GO:0031625: ubiquitin protein ligase binding	8.73E-03
59	GO:0008061: chitin binding	8.87E-03
60	GO:0004842: ubiquitin-protein transferase activity	9.90E-03
61	GO:0003779: actin binding	1.09E-02
62	GO:0004707: MAP kinase activity	1.18E-02
63	GO:0033612: receptor serine/threonine kinase binding	1.18E-02
64	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-02
65	GO:0009055: electron carrier activity	1.41E-02
66	GO:0008514: organic anion transmembrane transporter activity	1.42E-02
67	GO:0030551: cyclic nucleotide binding	1.59E-02
68	GO:0015144: carbohydrate transmembrane transporter activity	1.69E-02
69	GO:0015297: antiporter activity	1.86E-02
70	GO:0005351: sugar:proton symporter activity	1.91E-02
71	GO:0004518: nuclease activity	2.04E-02
72	GO:0051015: actin filament binding	2.13E-02
73	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.73E-02
74	GO:0102483: scopolin beta-glucosidase activity	2.84E-02
75	GO:0030247: polysaccharide binding	2.84E-02
76	GO:0004683: calmodulin-dependent protein kinase activity	2.84E-02
77	GO:0015238: drug transmembrane transporter activity	3.16E-02
78	GO:0050660: flavin adenine dinucleotide binding	3.49E-02
79	GO:0003729: mRNA binding	3.51E-02
80	GO:0043565: sequence-specific DNA binding	3.64E-02
81	GO:0008422: beta-glucosidase activity	3.84E-02
82	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.84E-02
83	GO:0050661: NADP binding	3.96E-02
84	GO:0051539: 4 iron, 4 sulfur cluster binding	3.96E-02
85	GO:0043621: protein self-association	4.57E-02
86	GO:0035091: phosphatidylinositol binding	4.57E-02
87	GO:0042803: protein homodimerization activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	8.69E-13
2	GO:0000145: exocyst	9.33E-06
3	GO:0005911: cell-cell junction	1.98E-04
4	GO:0016442: RISC complex	1.98E-04
5	GO:0010494: cytoplasmic stress granule	2.45E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	4.43E-04
7	GO:0070062: extracellular exosome	1.03E-03
8	GO:0010008: endosome membrane	1.41E-03
9	GO:0016021: integral component of membrane	1.50E-03
10	GO:0016363: nuclear matrix	2.57E-03
11	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.02E-03
12	GO:0005887: integral component of plasma membrane	4.50E-03
13	GO:0031902: late endosome membrane	5.39E-03
14	GO:0000159: protein phosphatase type 2A complex	6.27E-03
15	GO:0048471: perinuclear region of cytoplasm	6.27E-03
16	GO:0043234: protein complex	9.57E-03
17	GO:0005829: cytosol	1.11E-02
18	GO:0005768: endosome	1.67E-02
19	GO:0005770: late endosome	1.67E-02
20	GO:0009506: plasmodesma	2.14E-02
21	GO:0005778: peroxisomal membrane	2.33E-02
22	GO:0000932: P-body	2.53E-02
23	GO:0090406: pollen tube	4.32E-02