Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G03420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0010378: temperature compensation of the circadian clock0.00E+00
3GO:0010025: wax biosynthetic process4.23E-08
4GO:0009913: epidermal cell differentiation1.43E-05
5GO:0007623: circadian rhythm6.39E-05
6GO:0042761: very long-chain fatty acid biosynthetic process7.12E-05
7GO:0006355: regulation of transcription, DNA-templated7.25E-05
8GO:0030148: sphingolipid biosynthetic process1.01E-04
9GO:0000038: very long-chain fatty acid metabolic process1.01E-04
10GO:1901959: positive regulation of cutin biosynthetic process1.81E-04
11GO:0071712: ER-associated misfolded protein catabolic process1.81E-04
12GO:0032527: protein exit from endoplasmic reticulum1.81E-04
13GO:0051170: nuclear import1.81E-04
14GO:0009809: lignin biosynthetic process2.06E-04
15GO:0032940: secretion by cell3.05E-04
16GO:1904278: positive regulation of wax biosynthetic process3.05E-04
17GO:0070417: cellular response to cold3.81E-04
18GO:0042335: cuticle development4.12E-04
19GO:0010321: regulation of vegetative phase change4.41E-04
20GO:1901000: regulation of response to salt stress4.41E-04
21GO:0030100: regulation of endocytosis4.41E-04
22GO:0048825: cotyledon development5.10E-04
23GO:0009873: ethylene-activated signaling pathway5.66E-04
24GO:0071585: detoxification of cadmium ion5.87E-04
25GO:0042991: transcription factor import into nucleus5.87E-04
26GO:0046345: abscisic acid catabolic process5.87E-04
27GO:0022622: root system development5.87E-04
28GO:0045723: positive regulation of fatty acid biosynthetic process5.87E-04
29GO:0009697: salicylic acid biosynthetic process7.44E-04
30GO:0006461: protein complex assembly7.44E-04
31GO:0048578: positive regulation of long-day photoperiodism, flowering7.44E-04
32GO:0006656: phosphatidylcholine biosynthetic process7.44E-04
33GO:0006351: transcription, DNA-templated8.30E-04
34GO:0000160: phosphorelay signal transduction system1.05E-03
35GO:0042372: phylloquinone biosynthetic process1.08E-03
36GO:0045926: negative regulation of growth1.08E-03
37GO:0080086: stamen filament development1.08E-03
38GO:0071470: cellular response to osmotic stress1.08E-03
39GO:0010218: response to far red light1.10E-03
40GO:0009637: response to blue light1.25E-03
41GO:0032880: regulation of protein localization1.26E-03
42GO:0050829: defense response to Gram-negative bacterium1.26E-03
43GO:0009704: de-etiolation1.46E-03
44GO:0008610: lipid biosynthetic process1.46E-03
45GO:0009819: drought recovery1.46E-03
46GO:0006631: fatty acid metabolic process1.48E-03
47GO:0010114: response to red light1.60E-03
48GO:0009640: photomorphogenesis1.60E-03
49GO:0010099: regulation of photomorphogenesis1.66E-03
50GO:0090305: nucleic acid phosphodiester bond hydrolysis1.87E-03
51GO:0006098: pentose-phosphate shunt1.87E-03
52GO:0009638: phototropism2.09E-03
53GO:0009641: shade avoidance2.32E-03
54GO:0006949: syncytium formation2.32E-03
55GO:0016024: CDP-diacylglycerol biosynthetic process2.80E-03
56GO:0042545: cell wall modification2.95E-03
57GO:0009718: anthocyanin-containing compound biosynthetic process3.06E-03
58GO:2000012: regulation of auxin polar transport3.06E-03
59GO:0009733: response to auxin3.15E-03
60GO:0009887: animal organ morphogenesis3.32E-03
61GO:0009266: response to temperature stimulus3.32E-03
62GO:0010143: cutin biosynthetic process3.32E-03
63GO:0009058: biosynthetic process3.99E-03
64GO:0009409: response to cold4.19E-03
65GO:0009908: flower development4.40E-03
66GO:0048511: rhythmic process4.73E-03
67GO:0006633: fatty acid biosynthetic process4.75E-03
68GO:0009416: response to light stimulus5.00E-03
69GO:0010017: red or far-red light signaling pathway5.03E-03
70GO:0045490: pectin catabolic process5.21E-03
71GO:0001944: vasculature development5.34E-03
72GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.34E-03
73GO:0006470: protein dephosphorylation5.96E-03
74GO:0008284: positive regulation of cell proliferation5.98E-03
75GO:0042631: cellular response to water deprivation6.31E-03
76GO:0000226: microtubule cytoskeleton organization6.31E-03
77GO:0009958: positive gravitropism6.64E-03
78GO:0010268: brassinosteroid homeostasis6.64E-03
79GO:0042752: regulation of circadian rhythm6.99E-03
80GO:0000302: response to reactive oxygen species7.69E-03
81GO:0016132: brassinosteroid biosynthetic process7.69E-03
82GO:0009826: unidimensional cell growth7.76E-03
83GO:0009630: gravitropism8.05E-03
84GO:0009639: response to red or far red light8.79E-03
85GO:0009828: plant-type cell wall loosening8.79E-03
86GO:0016125: sterol metabolic process8.79E-03
87GO:0019760: glucosinolate metabolic process8.79E-03
88GO:0009911: positive regulation of flower development9.95E-03
89GO:0080167: response to karrikin1.00E-02
90GO:0010029: regulation of seed germination1.03E-02
91GO:0015995: chlorophyll biosynthetic process1.12E-02
92GO:0018298: protein-chromophore linkage1.20E-02
93GO:0045892: negative regulation of transcription, DNA-templated1.22E-02
94GO:0048527: lateral root development1.33E-02
95GO:0009631: cold acclimation1.33E-02
96GO:0016042: lipid catabolic process1.44E-02
97GO:0055114: oxidation-reduction process1.51E-02
98GO:0042542: response to hydrogen peroxide1.65E-02
99GO:0009644: response to high light intensity1.79E-02
100GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.94E-02
101GO:0009664: plant-type cell wall organization1.99E-02
102GO:0042538: hyperosmotic salinity response1.99E-02
103GO:0009734: auxin-activated signaling pathway2.09E-02
104GO:0009736: cytokinin-activated signaling pathway2.10E-02
105GO:0009585: red, far-red light phototransduction2.10E-02
106GO:0048367: shoot system development2.42E-02
107GO:0009737: response to abscisic acid3.17E-02
108GO:0009845: seed germination3.34E-02
109GO:0006511: ubiquitin-dependent protein catabolic process3.57E-02
110GO:0009739: response to gibberellin4.31E-02
111GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.31E-02
112GO:0010468: regulation of gene expression4.51E-02
113GO:0016567: protein ubiquitination4.91E-02
RankGO TermAdjusted P value
1GO:0052631: sphingolipid delta-8 desaturase activity0.00E+00
2GO:0052747: sinapyl alcohol dehydrogenase activity2.67E-07
3GO:0045551: cinnamyl-alcohol dehydrogenase activity1.79E-06
4GO:0008909: isochorismate synthase activity7.58E-05
5GO:0004105: choline-phosphate cytidylyltransferase activity7.58E-05
6GO:0001047: core promoter binding1.81E-04
7GO:0044390: ubiquitin-like protein conjugating enzyme binding1.81E-04
8GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.97E-04
9GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.97E-04
10GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.97E-04
11GO:0010295: (+)-abscisic acid 8'-hydroxylase activity3.05E-04
12GO:0070330: aromatase activity3.05E-04
13GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway5.87E-04
14GO:0000156: phosphorelay response regulator activity6.19E-04
15GO:0018685: alkane 1-monooxygenase activity7.44E-04
16GO:0003700: transcription factor activity, sequence-specific DNA binding7.62E-04
17GO:0043565: sequence-specific DNA binding7.93E-04
18GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity9.07E-04
19GO:0004366: glycerol-3-phosphate O-acyltransferase activity9.07E-04
20GO:0009881: photoreceptor activity1.26E-03
21GO:0016209: antioxidant activity1.46E-03
22GO:0000989: transcription factor activity, transcription factor binding1.87E-03
23GO:0004864: protein phosphatase inhibitor activity2.32E-03
24GO:0045330: aspartyl esterase activity2.37E-03
25GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.61E-03
26GO:0000976: transcription regulatory region sequence-specific DNA binding2.80E-03
27GO:0030599: pectinesterase activity2.86E-03
28GO:0016746: transferase activity, transferring acyl groups3.12E-03
29GO:0008083: growth factor activity3.32E-03
30GO:0042626: ATPase activity, coupled to transmembrane movement of substances6.62E-03
31GO:0003677: DNA binding7.22E-03
32GO:0004518: nuclease activity8.05E-03
33GO:0016788: hydrolase activity, acting on ester bonds8.21E-03
34GO:0016791: phosphatase activity8.79E-03
35GO:0016597: amino acid binding9.56E-03
36GO:0052689: carboxylic ester hydrolase activity1.11E-02
37GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.16E-02
38GO:0004722: protein serine/threonine phosphatase activity1.32E-02
39GO:0016491: oxidoreductase activity1.74E-02
40GO:0004842: ubiquitin-protein transferase activity1.85E-02
41GO:0008270: zinc ion binding2.46E-02
42GO:0016874: ligase activity2.58E-02
43GO:0016740: transferase activity3.21E-02
44GO:0019825: oxygen binding3.74E-02
45GO:0046910: pectinesterase inhibitor activity3.78E-02
RankGO TermAdjusted P value
1GO:0036513: Derlin-1 retrotranslocation complex4.41E-04
2GO:0005798: Golgi-associated vesicle9.07E-04
3GO:0005789: endoplasmic reticulum membrane1.15E-03
4GO:0005783: endoplasmic reticulum1.56E-03
5GO:0005622: intracellular2.17E-03
6GO:0005769: early endosome3.86E-03
7GO:0005618: cell wall6.11E-03
8GO:0046658: anchored component of plasma membrane6.89E-03
9GO:0071944: cell periphery8.42E-03
10GO:0016021: integral component of membrane2.29E-02
11GO:0016607: nuclear speck2.42E-02
12GO:0005634: nucleus3.02E-02
13GO:0010287: plastoglobule3.04E-02
14GO:0005654: nucleoplasm3.10E-02
15GO:0005623: cell3.22E-02
16GO:0031225: anchored component of membrane4.09E-02
17GO:0005615: extracellular space4.31E-02
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Gene type



Gene DE type