GO Enrichment Analysis of Co-expressed Genes with
AT4G03415
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 6 | GO:0018298: protein-chromophore linkage | 9.81E-09 |
| 7 | GO:0015979: photosynthesis | 1.05E-08 |
| 8 | GO:0010027: thylakoid membrane organization | 3.80E-07 |
| 9 | GO:0009772: photosynthetic electron transport in photosystem II | 1.59E-05 |
| 10 | GO:0010196: nonphotochemical quenching | 1.59E-05 |
| 11 | GO:0048564: photosystem I assembly | 2.11E-05 |
| 12 | GO:0010206: photosystem II repair | 3.41E-05 |
| 13 | GO:0043953: protein transport by the Tat complex | 5.34E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.34E-05 |
| 15 | GO:0000481: maturation of 5S rRNA | 5.34E-05 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 5.34E-05 |
| 17 | GO:0042371: vitamin K biosynthetic process | 5.34E-05 |
| 18 | GO:0065002: intracellular protein transmembrane transport | 5.34E-05 |
| 19 | GO:0043007: maintenance of rDNA | 5.34E-05 |
| 20 | GO:1902458: positive regulation of stomatal opening | 5.34E-05 |
| 21 | GO:0034337: RNA folding | 5.34E-05 |
| 22 | GO:0006419: alanyl-tRNA aminoacylation | 5.34E-05 |
| 23 | GO:0010362: negative regulation of anion channel activity by blue light | 5.34E-05 |
| 24 | GO:0006432: phenylalanyl-tRNA aminoacylation | 1.30E-04 |
| 25 | GO:0018026: peptidyl-lysine monomethylation | 1.30E-04 |
| 26 | GO:0010155: regulation of proton transport | 1.30E-04 |
| 27 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.30E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.30E-04 |
| 29 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.51E-04 |
| 30 | GO:0005977: glycogen metabolic process | 2.22E-04 |
| 31 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.25E-04 |
| 32 | GO:0006020: inositol metabolic process | 3.25E-04 |
| 33 | GO:0007623: circadian rhythm | 3.69E-04 |
| 34 | GO:0006546: glycine catabolic process | 4.35E-04 |
| 35 | GO:0006021: inositol biosynthetic process | 4.35E-04 |
| 36 | GO:0010021: amylopectin biosynthetic process | 4.35E-04 |
| 37 | GO:0009765: photosynthesis, light harvesting | 4.35E-04 |
| 38 | GO:0045727: positive regulation of translation | 4.35E-04 |
| 39 | GO:0015994: chlorophyll metabolic process | 4.35E-04 |
| 40 | GO:0009904: chloroplast accumulation movement | 5.52E-04 |
| 41 | GO:0010236: plastoquinone biosynthetic process | 5.52E-04 |
| 42 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.52E-04 |
| 43 | GO:0016311: dephosphorylation | 6.16E-04 |
| 44 | GO:0046855: inositol phosphate dephosphorylation | 6.76E-04 |
| 45 | GO:0042793: transcription from plastid promoter | 6.76E-04 |
| 46 | GO:0042549: photosystem II stabilization | 6.76E-04 |
| 47 | GO:0042372: phylloquinone biosynthetic process | 8.05E-04 |
| 48 | GO:0009903: chloroplast avoidance movement | 8.05E-04 |
| 49 | GO:0009637: response to blue light | 8.11E-04 |
| 50 | GO:0006400: tRNA modification | 9.40E-04 |
| 51 | GO:0009793: embryo development ending in seed dormancy | 1.05E-03 |
| 52 | GO:0032508: DNA duplex unwinding | 1.08E-03 |
| 53 | GO:2000070: regulation of response to water deprivation | 1.08E-03 |
| 54 | GO:0016559: peroxisome fission | 1.08E-03 |
| 55 | GO:0032544: plastid translation | 1.23E-03 |
| 56 | GO:0017004: cytochrome complex assembly | 1.23E-03 |
| 57 | GO:0015996: chlorophyll catabolic process | 1.23E-03 |
| 58 | GO:0007186: G-protein coupled receptor signaling pathway | 1.23E-03 |
| 59 | GO:0006754: ATP biosynthetic process | 1.38E-03 |
| 60 | GO:0009638: phototropism | 1.54E-03 |
| 61 | GO:0006096: glycolytic process | 1.61E-03 |
| 62 | GO:0000272: polysaccharide catabolic process | 1.88E-03 |
| 63 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.88E-03 |
| 64 | GO:0009773: photosynthetic electron transport in photosystem I | 1.88E-03 |
| 65 | GO:0045037: protein import into chloroplast stroma | 2.06E-03 |
| 66 | GO:0006790: sulfur compound metabolic process | 2.06E-03 |
| 67 | GO:0009785: blue light signaling pathway | 2.25E-03 |
| 68 | GO:0006006: glucose metabolic process | 2.25E-03 |
| 69 | GO:0010020: chloroplast fission | 2.43E-03 |
| 70 | GO:0019253: reductive pentose-phosphate cycle | 2.43E-03 |
| 71 | GO:0010207: photosystem II assembly | 2.43E-03 |
| 72 | GO:0046854: phosphatidylinositol phosphorylation | 2.63E-03 |
| 73 | GO:0048278: vesicle docking | 3.46E-03 |
| 74 | GO:0071369: cellular response to ethylene stimulus | 3.90E-03 |
| 75 | GO:0009561: megagametogenesis | 4.13E-03 |
| 76 | GO:0042631: cellular response to water deprivation | 4.60E-03 |
| 77 | GO:0010182: sugar mediated signaling pathway | 4.84E-03 |
| 78 | GO:0015986: ATP synthesis coupled proton transport | 5.09E-03 |
| 79 | GO:0009658: chloroplast organization | 5.09E-03 |
| 80 | GO:0061025: membrane fusion | 5.09E-03 |
| 81 | GO:0006814: sodium ion transport | 5.09E-03 |
| 82 | GO:0019252: starch biosynthetic process | 5.34E-03 |
| 83 | GO:0010583: response to cyclopentenone | 5.86E-03 |
| 84 | GO:0009567: double fertilization forming a zygote and endosperm | 6.39E-03 |
| 85 | GO:0006906: vesicle fusion | 7.79E-03 |
| 86 | GO:0015995: chlorophyll biosynthetic process | 8.09E-03 |
| 87 | GO:0000160: phosphorelay signal transduction system | 8.99E-03 |
| 88 | GO:0010218: response to far red light | 9.30E-03 |
| 89 | GO:0006281: DNA repair | 9.31E-03 |
| 90 | GO:0010119: regulation of stomatal movement | 9.61E-03 |
| 91 | GO:0006887: exocytosis | 1.16E-02 |
| 92 | GO:0010114: response to red light | 1.23E-02 |
| 93 | GO:0006364: rRNA processing | 1.51E-02 |
| 94 | GO:0009735: response to cytokinin | 1.51E-02 |
| 95 | GO:0006413: translational initiation | 2.73E-02 |
| 96 | GO:0010468: regulation of gene expression | 3.25E-02 |
| 97 | GO:0042254: ribosome biogenesis | 3.96E-02 |
| 98 | GO:0007049: cell cycle | 4.23E-02 |
| 99 | GO:0009409: response to cold | 4.53E-02 |
| 100 | GO:0046777: protein autophosphorylation | 4.78E-02 |
| 101 | GO:0006810: transport | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 3 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0016168: chlorophyll binding | 2.28E-05 |
| 6 | GO:0004813: alanine-tRNA ligase activity | 5.34E-05 |
| 7 | GO:0000049: tRNA binding | 7.04E-05 |
| 8 | GO:0031072: heat shock protein binding | 8.17E-05 |
| 9 | GO:0031409: pigment binding | 1.21E-04 |
| 10 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.30E-04 |
| 11 | GO:0004826: phenylalanine-tRNA ligase activity | 1.30E-04 |
| 12 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.30E-04 |
| 13 | GO:0019156: isoamylase activity | 1.30E-04 |
| 14 | GO:0047746: chlorophyllase activity | 1.30E-04 |
| 15 | GO:0010297: heteropolysaccharide binding | 1.30E-04 |
| 16 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.30E-04 |
| 17 | GO:0004047: aminomethyltransferase activity | 1.30E-04 |
| 18 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.30E-04 |
| 19 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.30E-04 |
| 20 | GO:0004751: ribose-5-phosphate isomerase activity | 2.22E-04 |
| 21 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 2.22E-04 |
| 22 | GO:0003913: DNA photolyase activity | 2.22E-04 |
| 23 | GO:0019843: rRNA binding | 2.41E-04 |
| 24 | GO:0009882: blue light photoreceptor activity | 3.25E-04 |
| 25 | GO:0008508: bile acid:sodium symporter activity | 3.25E-04 |
| 26 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 3.25E-04 |
| 27 | GO:0043495: protein anchor | 4.35E-04 |
| 28 | GO:0004659: prenyltransferase activity | 4.35E-04 |
| 29 | GO:0016279: protein-lysine N-methyltransferase activity | 4.35E-04 |
| 30 | GO:0042802: identical protein binding | 5.02E-04 |
| 31 | GO:0004556: alpha-amylase activity | 6.76E-04 |
| 32 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 8.05E-04 |
| 33 | GO:0019899: enzyme binding | 9.40E-04 |
| 34 | GO:0009881: photoreceptor activity | 9.40E-04 |
| 35 | GO:0030234: enzyme regulator activity | 1.71E-03 |
| 36 | GO:0051082: unfolded protein binding | 1.93E-03 |
| 37 | GO:0000155: phosphorelay sensor kinase activity | 2.25E-03 |
| 38 | GO:0004565: beta-galactosidase activity | 2.25E-03 |
| 39 | GO:0008017: microtubule binding | 3.46E-03 |
| 40 | GO:0022891: substrate-specific transmembrane transporter activity | 3.90E-03 |
| 41 | GO:0003756: protein disulfide isomerase activity | 4.13E-03 |
| 42 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 4.84E-03 |
| 43 | GO:0010181: FMN binding | 5.09E-03 |
| 44 | GO:0050662: coenzyme binding | 5.09E-03 |
| 45 | GO:0008483: transaminase activity | 6.66E-03 |
| 46 | GO:0016597: amino acid binding | 6.94E-03 |
| 47 | GO:0003924: GTPase activity | 9.31E-03 |
| 48 | GO:0003746: translation elongation factor activity | 1.02E-02 |
| 49 | GO:0003993: acid phosphatase activity | 1.06E-02 |
| 50 | GO:0000149: SNARE binding | 1.09E-02 |
| 51 | GO:0050661: NADP binding | 1.12E-02 |
| 52 | GO:0003729: mRNA binding | 1.13E-02 |
| 53 | GO:0005484: SNAP receptor activity | 1.23E-02 |
| 54 | GO:0051287: NAD binding | 1.40E-02 |
| 55 | GO:0003735: structural constituent of ribosome | 1.63E-02 |
| 56 | GO:0016787: hydrolase activity | 1.79E-02 |
| 57 | GO:0005525: GTP binding | 2.73E-02 |
| 58 | GO:0005509: calcium ion binding | 3.10E-02 |
| 59 | GO:0003743: translation initiation factor activity | 3.20E-02 |
| 60 | GO:0005515: protein binding | 4.27E-02 |
| 61 | GO:0046872: metal ion binding | 4.84E-02 |
| 62 | GO:0004672: protein kinase activity | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.95E-33 |
| 4 | GO:0009534: chloroplast thylakoid | 3.72E-30 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 6.88E-26 |
| 6 | GO:0009570: chloroplast stroma | 7.24E-17 |
| 7 | GO:0009579: thylakoid | 5.26E-16 |
| 8 | GO:0009941: chloroplast envelope | 2.06E-15 |
| 9 | GO:0009538: photosystem I reaction center | 1.15E-07 |
| 10 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.70E-07 |
| 11 | GO:0010287: plastoglobule | 3.69E-07 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 4.27E-07 |
| 13 | GO:0031977: thylakoid lumen | 1.75E-06 |
| 14 | GO:0016020: membrane | 2.88E-05 |
| 15 | GO:0031361: integral component of thylakoid membrane | 5.34E-05 |
| 16 | GO:0009783: photosystem II antenna complex | 5.34E-05 |
| 17 | GO:0030095: chloroplast photosystem II | 9.37E-05 |
| 18 | GO:0042651: thylakoid membrane | 1.51E-04 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 1.51E-04 |
| 20 | GO:0033281: TAT protein transport complex | 2.22E-04 |
| 21 | GO:0009528: plastid inner membrane | 2.22E-04 |
| 22 | GO:0009522: photosystem I | 3.02E-04 |
| 23 | GO:0009523: photosystem II | 3.25E-04 |
| 24 | GO:0019898: extrinsic component of membrane | 3.25E-04 |
| 25 | GO:0009544: chloroplast ATP synthase complex | 4.35E-04 |
| 26 | GO:0009527: plastid outer membrane | 4.35E-04 |
| 27 | GO:0009898: cytoplasmic side of plasma membrane | 4.35E-04 |
| 28 | GO:0010319: stromule | 4.47E-04 |
| 29 | GO:0009707: chloroplast outer membrane | 6.46E-04 |
| 30 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 6.76E-04 |
| 31 | GO:0009986: cell surface | 9.40E-04 |
| 32 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.38E-03 |
| 33 | GO:0005840: ribosome | 1.40E-03 |
| 34 | GO:0055028: cortical microtubule | 1.71E-03 |
| 35 | GO:0032040: small-subunit processome | 2.06E-03 |
| 36 | GO:0009508: plastid chromosome | 2.25E-03 |
| 37 | GO:0022626: cytosolic ribosome | 2.63E-03 |
| 38 | GO:0005759: mitochondrial matrix | 3.01E-03 |
| 39 | GO:0009532: plastid stroma | 3.46E-03 |
| 40 | GO:0009504: cell plate | 5.34E-03 |
| 41 | GO:0031969: chloroplast membrane | 6.31E-03 |
| 42 | GO:0009295: nucleoid | 6.66E-03 |
| 43 | GO:0048046: apoplast | 9.22E-03 |
| 44 | GO:0015934: large ribosomal subunit | 9.61E-03 |
| 45 | GO:0031201: SNARE complex | 1.16E-02 |
| 46 | GO:0005777: peroxisome | 1.90E-02 |
| 47 | GO:0012505: endomembrane system | 1.90E-02 |
| 48 | GO:0009524: phragmoplast | 2.37E-02 |
| 49 | GO:0016021: integral component of membrane | 4.26E-02 |
| 50 | GO:0005874: microtubule | 4.45E-02 |