Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G03000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006721: terpenoid metabolic process0.00E+00
2GO:0042908: xenobiotic transport0.00E+00
3GO:0018293: protein-FAD linkage0.00E+00
4GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
5GO:0032780: negative regulation of ATPase activity0.00E+00
6GO:0017012: protein-phytochromobilin linkage0.00E+00
7GO:0010336: gibberellic acid homeostasis0.00E+00
8GO:0010202: response to low fluence red light stimulus0.00E+00
9GO:0046294: formaldehyde catabolic process0.00E+00
10GO:0006099: tricarboxylic acid cycle8.00E-08
11GO:0006006: glucose metabolic process2.05E-05
12GO:0055114: oxidation-reduction process6.13E-05
13GO:0006120: mitochondrial electron transport, NADH to ubiquinone9.36E-05
14GO:0080022: primary root development1.11E-04
15GO:0050790: regulation of catalytic activity1.24E-04
16GO:0006520: cellular amino acid metabolic process1.25E-04
17GO:0051603: proteolysis involved in cellular protein catabolic process1.39E-04
18GO:0031468: nuclear envelope reassembly1.95E-04
19GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport1.95E-04
20GO:0006835: dicarboxylic acid transport1.95E-04
21GO:0006567: threonine catabolic process1.95E-04
22GO:0016487: farnesol metabolic process1.95E-04
23GO:0031539: positive regulation of anthocyanin metabolic process1.95E-04
24GO:0006007: glucose catabolic process1.95E-04
25GO:0005975: carbohydrate metabolic process2.78E-04
26GO:0019441: tryptophan catabolic process to kynurenine4.38E-04
27GO:0097054: L-glutamate biosynthetic process4.38E-04
28GO:0080183: response to photooxidative stress4.38E-04
29GO:0043100: pyrimidine nucleobase salvage4.38E-04
30GO:0043255: regulation of carbohydrate biosynthetic process4.38E-04
31GO:0019388: galactose catabolic process4.38E-04
32GO:0010617: circadian regulation of calcium ion oscillation4.38E-04
33GO:2000030: regulation of response to red or far red light4.38E-04
34GO:0044419: interspecies interaction between organisms4.38E-04
35GO:0006508: proteolysis5.07E-04
36GO:0006108: malate metabolic process5.09E-04
37GO:1901562: response to paraquat7.14E-04
38GO:0015940: pantothenate biosynthetic process7.14E-04
39GO:0071492: cellular response to UV-A7.14E-04
40GO:0044375: regulation of peroxisome size7.14E-04
41GO:0006760: folic acid-containing compound metabolic process7.14E-04
42GO:0006228: UTP biosynthetic process1.02E-03
43GO:0010148: transpiration1.02E-03
44GO:0009963: positive regulation of flavonoid biosynthetic process1.02E-03
45GO:0009590: detection of gravity1.02E-03
46GO:0015700: arsenite transport1.02E-03
47GO:0009584: detection of visible light1.02E-03
48GO:0006537: glutamate biosynthetic process1.02E-03
49GO:0006241: CTP biosynthetic process1.02E-03
50GO:0009399: nitrogen fixation1.02E-03
51GO:0006165: nucleoside diphosphate phosphorylation1.02E-03
52GO:0032981: mitochondrial respiratory chain complex I assembly1.02E-03
53GO:0046686: response to cadmium ion1.07E-03
54GO:0009649: entrainment of circadian clock1.35E-03
55GO:0006749: glutathione metabolic process1.35E-03
56GO:0044205: 'de novo' UMP biosynthetic process1.35E-03
57GO:0009902: chloroplast relocation1.35E-03
58GO:0032366: intracellular sterol transport1.35E-03
59GO:0006542: glutamine biosynthetic process1.35E-03
60GO:0006646: phosphatidylethanolamine biosynthetic process1.35E-03
61GO:0009687: abscisic acid metabolic process1.35E-03
62GO:0070534: protein K63-linked ubiquitination1.35E-03
63GO:0019676: ammonia assimilation cycle1.35E-03
64GO:0015743: malate transport1.35E-03
65GO:0006545: glycine biosynthetic process1.35E-03
66GO:0071486: cellular response to high light intensity1.35E-03
67GO:0009765: photosynthesis, light harvesting1.35E-03
68GO:0015846: polyamine transport1.35E-03
69GO:0006183: GTP biosynthetic process1.35E-03
70GO:0006221: pyrimidine nucleotide biosynthetic process1.35E-03
71GO:0042391: regulation of membrane potential1.42E-03
72GO:0009117: nucleotide metabolic process2.12E-03
73GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.12E-03
74GO:0006301: postreplication repair2.12E-03
75GO:0010304: PSII associated light-harvesting complex II catabolic process2.12E-03
76GO:0006751: glutathione catabolic process2.12E-03
77GO:0006555: methionine metabolic process2.12E-03
78GO:0070814: hydrogen sulfide biosynthetic process2.12E-03
79GO:0003006: developmental process involved in reproduction2.12E-03
80GO:0010189: vitamin E biosynthetic process2.54E-03
81GO:0019509: L-methionine salvage from methylthioadenosine2.54E-03
82GO:1901001: negative regulation of response to salt stress2.54E-03
83GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.54E-03
84GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process3.00E-03
85GO:0010374: stomatal complex development3.00E-03
86GO:0010161: red light signaling pathway3.00E-03
87GO:0006955: immune response3.00E-03
88GO:0042128: nitrate assimilation3.03E-03
89GO:0048658: anther wall tapetum development3.47E-03
90GO:0016559: peroxisome fission3.47E-03
91GO:0030091: protein repair3.47E-03
92GO:0005978: glycogen biosynthetic process3.47E-03
93GO:0009787: regulation of abscisic acid-activated signaling pathway3.47E-03
94GO:0010218: response to far red light3.89E-03
95GO:0009407: toxin catabolic process3.89E-03
96GO:0006526: arginine biosynthetic process3.97E-03
97GO:0010099: regulation of photomorphogenesis3.97E-03
98GO:0015996: chlorophyll catabolic process3.97E-03
99GO:0007568: aging4.08E-03
100GO:0009853: photorespiration4.47E-03
101GO:0046685: response to arsenic-containing substance4.49E-03
102GO:0080144: amino acid homeostasis4.49E-03
103GO:0051453: regulation of intracellular pH5.04E-03
104GO:0009638: phototropism5.04E-03
105GO:0009098: leucine biosynthetic process5.04E-03
106GO:0000103: sulfate assimilation5.61E-03
107GO:0045036: protein targeting to chloroplast5.61E-03
108GO:0009970: cellular response to sulfate starvation5.61E-03
109GO:0006325: chromatin organization5.61E-03
110GO:0009640: photomorphogenesis5.76E-03
111GO:0006879: cellular iron ion homeostasis6.20E-03
112GO:0018119: peptidyl-cysteine S-nitrosylation6.20E-03
113GO:0048229: gametophyte development6.20E-03
114GO:0072593: reactive oxygen species metabolic process6.20E-03
115GO:0052544: defense response by callose deposition in cell wall6.20E-03
116GO:0009636: response to toxic substance6.46E-03
117GO:2000028: regulation of photoperiodism, flowering7.44E-03
118GO:0050826: response to freezing7.44E-03
119GO:0080167: response to karrikin7.69E-03
120GO:0009585: red, far-red light phototransduction7.75E-03
121GO:0009266: response to temperature stimulus8.10E-03
122GO:0006857: oligopeptide transport8.31E-03
123GO:0010039: response to iron ion8.77E-03
124GO:0007031: peroxisome organization8.77E-03
125GO:0007030: Golgi organization8.77E-03
126GO:0019853: L-ascorbic acid biosynthetic process8.77E-03
127GO:0006096: glycolytic process9.17E-03
128GO:0042753: positive regulation of circadian rhythm9.46E-03
129GO:0045454: cell redox homeostasis9.68E-03
130GO:0051017: actin filament bundle assembly1.02E-02
131GO:0010017: red or far-red light signaling pathway1.24E-02
132GO:0016226: iron-sulfur cluster assembly1.24E-02
133GO:0009408: response to heat1.26E-02
134GO:0006012: galactose metabolic process1.32E-02
135GO:0009693: ethylene biosynthetic process1.32E-02
136GO:0009058: biosynthetic process1.46E-02
137GO:0010118: stomatal movement1.57E-02
138GO:0015991: ATP hydrolysis coupled proton transport1.57E-02
139GO:0009651: response to salt stress1.61E-02
140GO:0006662: glycerol ether metabolic process1.65E-02
141GO:0009958: positive gravitropism1.65E-02
142GO:0015986: ATP synthesis coupled proton transport1.74E-02
143GO:0061025: membrane fusion1.74E-02
144GO:0006814: sodium ion transport1.74E-02
145GO:0019252: starch biosynthetic process1.83E-02
146GO:0008654: phospholipid biosynthetic process1.83E-02
147GO:0055072: iron ion homeostasis1.83E-02
148GO:0042742: defense response to bacterium1.91E-02
149GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.92E-02
150GO:0009630: gravitropism2.01E-02
151GO:0019761: glucosinolate biosynthetic process2.01E-02
152GO:1901657: glycosyl compound metabolic process2.11E-02
153GO:0006464: cellular protein modification process2.20E-02
154GO:0010029: regulation of seed germination2.60E-02
155GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.60E-02
156GO:0006974: cellular response to DNA damage stimulus2.70E-02
157GO:0010411: xyloglucan metabolic process2.80E-02
158GO:0009409: response to cold2.99E-02
159GO:0018298: protein-chromophore linkage3.02E-02
160GO:0006811: ion transport3.23E-02
161GO:0010043: response to zinc ion3.34E-02
162GO:0055085: transmembrane transport3.51E-02
163GO:0009867: jasmonic acid mediated signaling pathway3.57E-02
164GO:0034599: cellular response to oxidative stress3.68E-02
165GO:0044550: secondary metabolite biosynthetic process4.00E-02
166GO:0010114: response to red light4.27E-02
167GO:0009926: auxin polar transport4.27E-02
168GO:0006855: drug transmembrane transport4.77E-02
169GO:0031347: regulation of defense response4.89E-02
RankGO TermAdjusted P value
1GO:0031517: red light photoreceptor activity0.00E+00
2GO:0004151: dihydroorotase activity0.00E+00
3GO:0047886: farnesol dehydrogenase activity0.00E+00
4GO:0017153: sodium:dicarboxylate symporter activity0.00E+00
5GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
6GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
7GO:0042030: ATPase inhibitor activity0.00E+00
8GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
9GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity0.00E+00
10GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
11GO:0050342: tocopherol O-methyltransferase activity0.00E+00
12GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
13GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
14GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
15GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity0.00E+00
16GO:0015930: glutamate synthase activity0.00E+00
17GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
18GO:0018738: S-formylglutathione hydrolase activity0.00E+00
19GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
20GO:0015391: nucleobase:cation symporter activity0.00E+00
21GO:0015205: nucleobase transmembrane transporter activity0.00E+00
22GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
23GO:0008106: alcohol dehydrogenase (NADP+) activity1.53E-05
24GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity6.73E-05
25GO:0030060: L-malate dehydrogenase activity9.36E-05
26GO:0005261: cation channel activity9.36E-05
27GO:0008234: cysteine-type peptidase activity1.56E-04
28GO:0004197: cysteine-type endopeptidase activity1.86E-04
29GO:0008732: L-allo-threonine aldolase activity1.95E-04
30GO:0016041: glutamate synthase (ferredoxin) activity1.95E-04
31GO:0031516: far-red light photoreceptor activity1.95E-04
32GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity1.95E-04
33GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.95E-04
34GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity1.95E-04
35GO:0016784: 3-mercaptopyruvate sulfurtransferase activity1.95E-04
36GO:0080048: GDP-D-glucose phosphorylase activity1.95E-04
37GO:0046480: galactolipid galactosyltransferase activity1.95E-04
38GO:0080079: cellobiose glucosidase activity1.95E-04
39GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity1.95E-04
40GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity1.95E-04
41GO:0080047: GDP-L-galactose phosphorylase activity1.95E-04
42GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity1.95E-04
43GO:1990841: promoter-specific chromatin binding1.95E-04
44GO:0004793: threonine aldolase activity1.95E-04
45GO:0016780: phosphotransferase activity, for other substituted phosphate groups1.95E-04
46GO:0016783: sulfurtransferase activity1.95E-04
47GO:0015446: ATPase-coupled arsenite transmembrane transporter activity1.95E-04
48GO:0071992: phytochelatin transmembrane transporter activity1.95E-04
49GO:0004307: ethanolaminephosphotransferase activity1.95E-04
50GO:0004046: aminoacylase activity4.38E-04
51GO:0004142: diacylglycerol cholinephosphotransferase activity4.38E-04
52GO:0051980: iron-nicotianamine transmembrane transporter activity4.38E-04
53GO:0015179: L-amino acid transmembrane transporter activity4.38E-04
54GO:0009883: red or far-red light photoreceptor activity4.38E-04
55GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity4.38E-04
56GO:0004061: arylformamidase activity4.38E-04
57GO:0004614: phosphoglucomutase activity4.38E-04
58GO:0030572: phosphatidyltransferase activity4.38E-04
59GO:0050897: cobalt ion binding4.84E-04
60GO:0030552: cAMP binding6.42E-04
61GO:0030553: cGMP binding6.42E-04
62GO:0004557: alpha-galactosidase activity7.14E-04
63GO:0003861: 3-isopropylmalate dehydratase activity7.14E-04
64GO:0008020: G-protein coupled photoreceptor activity7.14E-04
65GO:0004781: sulfate adenylyltransferase (ATP) activity7.14E-04
66GO:0016805: dipeptidase activity7.14E-04
67GO:0052692: raffinose alpha-galactosidase activity7.14E-04
68GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity7.14E-04
69GO:0010277: chlorophyllide a oxygenase [overall] activity7.14E-04
70GO:0016491: oxidoreductase activity7.40E-04
71GO:0005216: ion channel activity8.68E-04
72GO:0016656: monodehydroascorbate reductase (NADH) activity1.02E-03
73GO:0015203: polyamine transmembrane transporter activity1.02E-03
74GO:0004550: nucleoside diphosphate kinase activity1.02E-03
75GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.02E-03
76GO:0035529: NADH pyrophosphatase activity1.02E-03
77GO:0004792: thiosulfate sulfurtransferase activity1.02E-03
78GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.35E-03
79GO:0004301: epoxide hydrolase activity1.35E-03
80GO:0005249: voltage-gated potassium channel activity1.42E-03
81GO:0030551: cyclic nucleotide binding1.42E-03
82GO:0051538: 3 iron, 4 sulfur cluster binding1.72E-03
83GO:0004356: glutamate-ammonia ligase activity1.72E-03
84GO:0008177: succinate dehydrogenase (ubiquinone) activity1.72E-03
85GO:0015035: protein disulfide oxidoreductase activity1.74E-03
86GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.12E-03
87GO:0016615: malate dehydrogenase activity2.12E-03
88GO:0080046: quercetin 4'-O-glucosyltransferase activity2.12E-03
89GO:0051117: ATPase binding2.12E-03
90GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity2.12E-03
91GO:0016787: hydrolase activity2.14E-03
92GO:0030170: pyridoxal phosphate binding2.55E-03
93GO:0005507: copper ion binding2.96E-03
94GO:0005085: guanyl-nucleotide exchange factor activity3.00E-03
95GO:0008235: metalloexopeptidase activity3.00E-03
96GO:0015140: malate transmembrane transporter activity3.00E-03
97GO:0008236: serine-type peptidase activity3.36E-03
98GO:0004869: cysteine-type endopeptidase inhibitor activity3.47E-03
99GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity3.47E-03
100GO:0004034: aldose 1-epimerase activity3.47E-03
101GO:0030145: manganese ion binding4.08E-03
102GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.49E-03
103GO:0042802: identical protein binding4.56E-03
104GO:0015174: basic amino acid transmembrane transporter activity5.04E-03
105GO:0004364: glutathione transferase activity5.53E-03
106GO:0004673: protein histidine kinase activity5.61E-03
107GO:0004185: serine-type carboxypeptidase activity5.76E-03
108GO:0004177: aminopeptidase activity6.20E-03
109GO:0008559: xenobiotic-transporting ATPase activity6.20E-03
110GO:0046961: proton-transporting ATPase activity, rotational mechanism6.20E-03
111GO:0004129: cytochrome-c oxidase activity6.20E-03
112GO:0051537: 2 iron, 2 sulfur cluster binding6.22E-03
113GO:0015198: oligopeptide transporter activity6.81E-03
114GO:0008378: galactosyltransferase activity6.81E-03
115GO:0004089: carbonate dehydratase activity7.44E-03
116GO:0000155: phosphorelay sensor kinase activity7.44E-03
117GO:0046872: metal ion binding8.21E-03
118GO:0043130: ubiquitin binding1.02E-02
119GO:0008324: cation transmembrane transporter activity1.09E-02
120GO:0004176: ATP-dependent peptidase activity1.17E-02
121GO:0020037: heme binding1.21E-02
122GO:0047134: protein-disulfide reductase activity1.48E-02
123GO:0016829: lyase activity1.50E-02
124GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.65E-02
125GO:0004791: thioredoxin-disulfide reductase activity1.74E-02
126GO:0016853: isomerase activity1.74E-02
127GO:0050662: coenzyme binding1.74E-02
128GO:0048038: quinone binding1.92E-02
129GO:0008137: NADH dehydrogenase (ubiquinone) activity1.92E-02
130GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.11E-02
131GO:0008237: metallopeptidase activity2.30E-02
132GO:0008483: transaminase activity2.30E-02
133GO:0016413: O-acetyltransferase activity2.40E-02
134GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.44E-02
135GO:0016168: chlorophyll binding2.60E-02
136GO:0016788: hydrolase activity, acting on ester bonds3.03E-02
137GO:0004222: metalloendopeptidase activity3.23E-02
138GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.57E-02
139GO:0008422: beta-glucosidase activity3.80E-02
140GO:0051539: 4 iron, 4 sulfur cluster binding3.92E-02
141GO:0050661: NADP binding3.92E-02
142GO:0052689: carboxylic ester hydrolase activity4.06E-02
143GO:0005516: calmodulin binding4.32E-02
144GO:0042803: protein homodimerization activity4.60E-02
145GO:0015293: symporter activity4.64E-02
146GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.74E-02
147GO:0051287: NAD binding4.89E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain0.00E+00
3GO:0005773: vacuole1.84E-10
4GO:0005764: lysosome4.67E-07
5GO:0045273: respiratory chain complex II2.70E-06
6GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.70E-06
7GO:0009536: plastid4.26E-06
8GO:0005747: mitochondrial respiratory chain complex I1.50E-05
9GO:0005829: cytosol1.61E-05
10GO:0005746: mitochondrial respiratory chain4.56E-05
11GO:0009507: chloroplast5.18E-05
12GO:0005774: vacuolar membrane2.12E-04
13GO:0009570: chloroplast stroma4.88E-04
14GO:0005759: mitochondrial matrix4.94E-04
15GO:0005750: mitochondrial respiratory chain complex III5.74E-04
16GO:0005758: mitochondrial intermembrane space7.89E-04
17GO:0048046: apoplast7.90E-04
18GO:0045271: respiratory chain complex I8.68E-04
19GO:0005739: mitochondrion1.23E-03
20GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.35E-03
21GO:0031372: UBC13-MMS2 complex1.35E-03
22GO:0009526: plastid envelope1.35E-03
23GO:0031463: Cul3-RING ubiquitin ligase complex2.12E-03
24GO:0005778: peroxisomal membrane2.42E-03
25GO:0010319: stromule2.42E-03
26GO:0031359: integral component of chloroplast outer membrane3.00E-03
27GO:0009501: amyloplast3.47E-03
28GO:0005615: extracellular space3.88E-03
29GO:0005779: integral component of peroxisomal membrane3.97E-03
30GO:0000325: plant-type vacuole4.08E-03
31GO:0009941: chloroplast envelope4.30E-03
32GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.49E-03
33GO:0016604: nuclear body5.04E-03
34GO:0005884: actin filament6.20E-03
35GO:0031966: mitochondrial membrane7.22E-03
36GO:0005753: mitochondrial proton-transporting ATP synthase complex8.77E-03
37GO:0016607: nuclear speck9.47E-03
38GO:0009523: photosystem II1.83E-02
39GO:0005887: integral component of plasma membrane1.86E-02
40GO:0005783: endoplasmic reticulum2.66E-02
41GO:0009707: chloroplast outer membrane3.02E-02
42GO:0031969: chloroplast membrane3.68E-02
43GO:0016020: membrane4.93E-02
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Gene type



Gene DE type