GO Enrichment Analysis of Co-expressed Genes with
AT4G02930
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 1.27E-11 |
| 9 | GO:0006412: translation | 9.90E-08 |
| 10 | GO:0009735: response to cytokinin | 7.07E-07 |
| 11 | GO:0030150: protein import into mitochondrial matrix | 1.14E-06 |
| 12 | GO:0006458: 'de novo' protein folding | 1.18E-06 |
| 13 | GO:0045041: protein import into mitochondrial intermembrane space | 1.93E-06 |
| 14 | GO:0009967: positive regulation of signal transduction | 1.93E-06 |
| 15 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.93E-06 |
| 16 | GO:0045039: protein import into mitochondrial inner membrane | 7.09E-06 |
| 17 | GO:0006626: protein targeting to mitochondrion | 2.22E-05 |
| 18 | GO:0006457: protein folding | 2.45E-05 |
| 19 | GO:0061077: chaperone-mediated protein folding | 6.32E-05 |
| 20 | GO:0007005: mitochondrion organization | 7.26E-05 |
| 21 | GO:0046686: response to cadmium ion | 7.87E-05 |
| 22 | GO:0042026: protein refolding | 9.88E-05 |
| 23 | GO:0006169: adenosine salvage | 2.02E-04 |
| 24 | GO:0031120: snRNA pseudouridine synthesis | 2.02E-04 |
| 25 | GO:0031118: rRNA pseudouridine synthesis | 2.02E-04 |
| 26 | GO:0000494: box C/D snoRNA 3'-end processing | 2.02E-04 |
| 27 | GO:0043985: histone H4-R3 methylation | 2.02E-04 |
| 28 | GO:1990258: histone glutamine methylation | 2.02E-04 |
| 29 | GO:0009553: embryo sac development | 2.47E-04 |
| 30 | GO:0010162: seed dormancy process | 3.54E-04 |
| 31 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 4.52E-04 |
| 32 | GO:0034470: ncRNA processing | 4.52E-04 |
| 33 | GO:0006413: translational initiation | 5.52E-04 |
| 34 | GO:0006954: inflammatory response | 7.36E-04 |
| 35 | GO:0010476: gibberellin mediated signaling pathway | 7.36E-04 |
| 36 | GO:0006556: S-adenosylmethionine biosynthetic process | 7.36E-04 |
| 37 | GO:0034976: response to endoplasmic reticulum stress | 7.47E-04 |
| 38 | GO:0009944: polarity specification of adaxial/abaxial axis | 8.26E-04 |
| 39 | GO:0000027: ribosomal large subunit assembly | 8.26E-04 |
| 40 | GO:0051302: regulation of cell division | 9.08E-04 |
| 41 | GO:0032981: mitochondrial respiratory chain complex I assembly | 1.05E-03 |
| 42 | GO:0006986: response to unfolded protein | 1.05E-03 |
| 43 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.05E-03 |
| 44 | GO:0033617: mitochondrial respiratory chain complex IV assembly | 1.05E-03 |
| 45 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.05E-03 |
| 46 | GO:0007276: gamete generation | 1.05E-03 |
| 47 | GO:0009855: determination of bilateral symmetry | 1.05E-03 |
| 48 | GO:0051131: chaperone-mediated protein complex assembly | 1.05E-03 |
| 49 | GO:0009294: DNA mediated transformation | 1.18E-03 |
| 50 | GO:0071215: cellular response to abscisic acid stimulus | 1.18E-03 |
| 51 | GO:0042254: ribosome biogenesis | 1.22E-03 |
| 52 | GO:1900864: mitochondrial RNA modification | 1.40E-03 |
| 53 | GO:0046345: abscisic acid catabolic process | 1.40E-03 |
| 54 | GO:0042273: ribosomal large subunit biogenesis | 1.40E-03 |
| 55 | GO:0051205: protein insertion into membrane | 1.40E-03 |
| 56 | GO:0000460: maturation of 5.8S rRNA | 1.40E-03 |
| 57 | GO:0008033: tRNA processing | 1.49E-03 |
| 58 | GO:0006461: protein complex assembly | 1.78E-03 |
| 59 | GO:0044209: AMP salvage | 1.78E-03 |
| 60 | GO:0010375: stomatal complex patterning | 1.78E-03 |
| 61 | GO:0031167: rRNA methylation | 1.78E-03 |
| 62 | GO:0000470: maturation of LSU-rRNA | 2.19E-03 |
| 63 | GO:0016554: cytidine to uridine editing | 2.19E-03 |
| 64 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.63E-03 |
| 65 | GO:0010374: stomatal complex development | 3.09E-03 |
| 66 | GO:0080186: developmental vegetative growth | 3.09E-03 |
| 67 | GO:0009451: RNA modification | 3.68E-03 |
| 68 | GO:0001558: regulation of cell growth | 4.10E-03 |
| 69 | GO:0006002: fructose 6-phosphate metabolic process | 4.10E-03 |
| 70 | GO:0001510: RNA methylation | 4.10E-03 |
| 71 | GO:0006189: 'de novo' IMP biosynthetic process | 4.65E-03 |
| 72 | GO:0006099: tricarboxylic acid cycle | 4.90E-03 |
| 73 | GO:0010205: photoinhibition | 5.21E-03 |
| 74 | GO:0043067: regulation of programmed cell death | 5.21E-03 |
| 75 | GO:1900865: chloroplast RNA modification | 5.21E-03 |
| 76 | GO:0006259: DNA metabolic process | 5.80E-03 |
| 77 | GO:0009651: response to salt stress | 6.30E-03 |
| 78 | GO:0006913: nucleocytoplasmic transport | 6.41E-03 |
| 79 | GO:0006820: anion transport | 7.04E-03 |
| 80 | GO:0006108: malate metabolic process | 7.70E-03 |
| 81 | GO:0090351: seedling development | 9.07E-03 |
| 82 | GO:0010030: positive regulation of seed germination | 9.07E-03 |
| 83 | GO:0016569: covalent chromatin modification | 1.09E-02 |
| 84 | GO:0006396: RNA processing | 1.20E-02 |
| 85 | GO:0006730: one-carbon metabolic process | 1.29E-02 |
| 86 | GO:0006414: translational elongation | 1.30E-02 |
| 87 | GO:0000398: mRNA splicing, via spliceosome | 1.34E-02 |
| 88 | GO:0009693: ethylene biosynthetic process | 1.37E-02 |
| 89 | GO:0009845: seed germination | 1.58E-02 |
| 90 | GO:0010501: RNA secondary structure unwinding | 1.62E-02 |
| 91 | GO:0000413: protein peptidyl-prolyl isomerization | 1.62E-02 |
| 92 | GO:0009790: embryo development | 1.70E-02 |
| 93 | GO:0010197: polar nucleus fusion | 1.71E-02 |
| 94 | GO:0009960: endosperm development | 1.71E-02 |
| 95 | GO:0009749: response to glucose | 1.89E-02 |
| 96 | GO:0006635: fatty acid beta-oxidation | 1.99E-02 |
| 97 | GO:0080156: mitochondrial mRNA modification | 1.99E-02 |
| 98 | GO:0016032: viral process | 2.08E-02 |
| 99 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.11E-02 |
| 100 | GO:0071281: cellular response to iron ion | 2.18E-02 |
| 101 | GO:0009793: embryo development ending in seed dormancy | 2.52E-02 |
| 102 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.90E-02 |
| 103 | GO:0016049: cell growth | 3.01E-02 |
| 104 | GO:0006811: ion transport | 3.35E-02 |
| 105 | GO:0048527: lateral root development | 3.46E-02 |
| 106 | GO:0010043: response to zinc ion | 3.46E-02 |
| 107 | GO:0009631: cold acclimation | 3.46E-02 |
| 108 | GO:0006839: mitochondrial transport | 4.05E-02 |
| 109 | GO:0045454: cell redox homeostasis | 4.61E-02 |
| 110 | GO:0045892: negative regulation of transcription, DNA-templated | 4.68E-02 |
| 111 | GO:0009644: response to high light intensity | 4.68E-02 |
| 112 | GO:0000154: rRNA modification | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0003723: RNA binding | 2.11E-13 |
| 4 | GO:0000166: nucleotide binding | 1.49E-12 |
| 5 | GO:0003735: structural constituent of ribosome | 1.10E-11 |
| 6 | GO:0003746: translation elongation factor activity | 8.06E-08 |
| 7 | GO:0044183: protein binding involved in protein folding | 2.03E-07 |
| 8 | GO:0051082: unfolded protein binding | 1.41E-06 |
| 9 | GO:0003729: mRNA binding | 1.64E-06 |
| 10 | GO:0030515: snoRNA binding | 1.92E-06 |
| 11 | GO:0043021: ribonucleoprotein complex binding | 1.93E-06 |
| 12 | GO:0005078: MAP-kinase scaffold activity | 1.93E-06 |
| 13 | GO:0008026: ATP-dependent helicase activity | 2.79E-05 |
| 14 | GO:0019843: rRNA binding | 4.11E-05 |
| 15 | GO:0004407: histone deacetylase activity | 4.66E-05 |
| 16 | GO:0005507: copper ion binding | 1.92E-04 |
| 17 | GO:0048037: cofactor binding | 2.02E-04 |
| 18 | GO:0008746: NAD(P)+ transhydrogenase activity | 2.02E-04 |
| 19 | GO:1990259: histone-glutamine methyltransferase activity | 2.02E-04 |
| 20 | GO:0042134: rRNA primary transcript binding | 2.02E-04 |
| 21 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 2.02E-04 |
| 22 | GO:0004001: adenosine kinase activity | 2.02E-04 |
| 23 | GO:0008135: translation factor activity, RNA binding | 2.08E-04 |
| 24 | GO:0001055: RNA polymerase II activity | 3.01E-04 |
| 25 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.26E-04 |
| 26 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 4.52E-04 |
| 27 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 4.52E-04 |
| 28 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 4.52E-04 |
| 29 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 4.52E-04 |
| 30 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 4.52E-04 |
| 31 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 4.52E-04 |
| 32 | GO:0009982: pseudouridine synthase activity | 5.33E-04 |
| 33 | GO:0008649: rRNA methyltransferase activity | 7.36E-04 |
| 34 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 7.36E-04 |
| 35 | GO:0004478: methionine adenosyltransferase activity | 7.36E-04 |
| 36 | GO:0008469: histone-arginine N-methyltransferase activity | 7.36E-04 |
| 37 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 7.36E-04 |
| 38 | GO:0032947: protein complex scaffold | 7.36E-04 |
| 39 | GO:0070181: small ribosomal subunit rRNA binding | 7.36E-04 |
| 40 | GO:0003743: translation initiation factor activity | 7.78E-04 |
| 41 | GO:0051087: chaperone binding | 9.08E-04 |
| 42 | GO:0003756: protein disulfide isomerase activity | 1.28E-03 |
| 43 | GO:0005524: ATP binding | 1.85E-03 |
| 44 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 2.19E-03 |
| 45 | GO:0016615: malate dehydrogenase activity | 2.19E-03 |
| 46 | GO:0030060: L-malate dehydrogenase activity | 2.63E-03 |
| 47 | GO:0008235: metalloexopeptidase activity | 3.09E-03 |
| 48 | GO:0003872: 6-phosphofructokinase activity | 3.09E-03 |
| 49 | GO:0004004: ATP-dependent RNA helicase activity | 3.35E-03 |
| 50 | GO:0015288: porin activity | 3.59E-03 |
| 51 | GO:0008173: RNA methyltransferase activity | 4.10E-03 |
| 52 | GO:0008308: voltage-gated anion channel activity | 4.10E-03 |
| 53 | GO:0050897: cobalt ion binding | 4.28E-03 |
| 54 | GO:0003678: DNA helicase activity | 4.65E-03 |
| 55 | GO:0001054: RNA polymerase I activity | 6.41E-03 |
| 56 | GO:0001056: RNA polymerase III activity | 7.04E-03 |
| 57 | GO:0000049: tRNA binding | 7.04E-03 |
| 58 | GO:0015114: phosphate ion transmembrane transporter activity | 7.70E-03 |
| 59 | GO:0015266: protein channel activity | 7.70E-03 |
| 60 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.14E-03 |
| 61 | GO:0004176: ATP-dependent peptidase activity | 1.21E-02 |
| 62 | GO:0004519: endonuclease activity | 1.50E-02 |
| 63 | GO:0004812: aminoacyl-tRNA ligase activity | 1.54E-02 |
| 64 | GO:0008080: N-acetyltransferase activity | 1.71E-02 |
| 65 | GO:0010181: FMN binding | 1.80E-02 |
| 66 | GO:0004721: phosphoprotein phosphatase activity | 2.90E-02 |
| 67 | GO:0008168: methyltransferase activity | 3.00E-02 |
| 68 | GO:0008236: serine-type peptidase activity | 3.01E-02 |
| 69 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.81E-02 |
| 70 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.05E-02 |
| 71 | GO:0004871: signal transducer activity | 4.82E-02 |
| 72 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 5 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 6 | GO:0005730: nucleolus | 5.05E-30 |
| 7 | GO:0005829: cytosol | 4.40E-10 |
| 8 | GO:0032040: small-subunit processome | 2.92E-09 |
| 9 | GO:0022626: cytosolic ribosome | 5.13E-09 |
| 10 | GO:0005840: ribosome | 2.94E-08 |
| 11 | GO:0005774: vacuolar membrane | 4.90E-08 |
| 12 | GO:0005739: mitochondrion | 5.30E-07 |
| 13 | GO:0005834: heterotrimeric G-protein complex | 9.70E-07 |
| 14 | GO:0070545: PeBoW complex | 1.93E-06 |
| 15 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.65E-06 |
| 16 | GO:0022625: cytosolic large ribosomal subunit | 4.73E-06 |
| 17 | GO:0005759: mitochondrial matrix | 5.48E-06 |
| 18 | GO:0005743: mitochondrial inner membrane | 1.12E-05 |
| 19 | GO:0022627: cytosolic small ribosomal subunit | 1.60E-05 |
| 20 | GO:0005618: cell wall | 2.49E-05 |
| 21 | GO:0031428: box C/D snoRNP complex | 7.11E-05 |
| 22 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.44E-05 |
| 23 | GO:0030687: preribosome, large subunit precursor | 1.31E-04 |
| 24 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 2.02E-04 |
| 25 | GO:0005662: DNA replication factor A complex | 2.02E-04 |
| 26 | GO:0009506: plasmodesma | 2.95E-04 |
| 27 | GO:0015030: Cajal body | 3.01E-04 |
| 28 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.54E-04 |
| 29 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.70E-04 |
| 30 | GO:0000419: DNA-directed RNA polymerase V complex | 7.47E-04 |
| 31 | GO:0005773: vacuole | 8.60E-04 |
| 32 | GO:0031429: box H/ACA snoRNP complex | 1.05E-03 |
| 33 | GO:0005747: mitochondrial respiratory chain complex I | 1.47E-03 |
| 34 | GO:0005737: cytoplasm | 1.52E-03 |
| 35 | GO:0000974: Prp19 complex | 2.19E-03 |
| 36 | GO:0030127: COPII vesicle coat | 2.19E-03 |
| 37 | GO:0016363: nuclear matrix | 2.63E-03 |
| 38 | GO:0030529: intracellular ribonucleoprotein complex | 2.85E-03 |
| 39 | GO:0005788: endoplasmic reticulum lumen | 3.01E-03 |
| 40 | GO:0000326: protein storage vacuole | 4.10E-03 |
| 41 | GO:0046930: pore complex | 4.10E-03 |
| 42 | GO:0005742: mitochondrial outer membrane translocase complex | 4.10E-03 |
| 43 | GO:0015934: large ribosomal subunit | 4.28E-03 |
| 44 | GO:0005736: DNA-directed RNA polymerase I complex | 4.65E-03 |
| 45 | GO:0005666: DNA-directed RNA polymerase III complex | 5.21E-03 |
| 46 | GO:0071011: precatalytic spliceosome | 5.21E-03 |
| 47 | GO:0071013: catalytic step 2 spliceosome | 6.41E-03 |
| 48 | GO:0005852: eukaryotic translation initiation factor 3 complex | 6.41E-03 |
| 49 | GO:0019013: viral nucleocapsid | 7.70E-03 |
| 50 | GO:0016020: membrane | 8.80E-03 |
| 51 | GO:0005758: mitochondrial intermembrane space | 1.05E-02 |
| 52 | GO:0005741: mitochondrial outer membrane | 1.21E-02 |
| 53 | GO:0015935: small ribosomal subunit | 1.21E-02 |
| 54 | GO:0009532: plastid stroma | 1.21E-02 |
| 55 | GO:0005654: nucleoplasm | 1.42E-02 |
| 56 | GO:0016592: mediator complex | 2.08E-02 |
| 57 | GO:0005634: nucleus | 2.18E-02 |
| 58 | GO:0009507: chloroplast | 2.35E-02 |
| 59 | GO:0010319: stromule | 2.38E-02 |
| 60 | GO:0009505: plant-type cell wall | 2.87E-02 |