co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02725

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0055065: metal ion homeostasis	0.00E+00
2	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
3	GO:0006114: glycerol biosynthetic process	0.00E+00
4	GO:0000476: maturation of 4.5S rRNA	2.76E-05
5	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	2.76E-05
6	GO:0000967: rRNA 5'-end processing	2.76E-05
7	GO:0006475: internal protein amino acid acetylation	2.76E-05
8	GO:1990052: ER to chloroplast lipid transport	2.76E-05
9	GO:0006474: N-terminal protein amino acid acetylation	2.76E-05
10	GO:0017198: N-terminal peptidyl-serine acetylation	2.76E-05
11	GO:0006436: tryptophanyl-tRNA aminoacylation	2.76E-05
12	GO:0033388: putrescine biosynthetic process from arginine	2.76E-05
13	GO:0019853: L-ascorbic acid biosynthetic process	4.09E-05
14	GO:0034470: ncRNA processing	7.01E-05
15	GO:0000256: allantoin catabolic process	7.01E-05
16	GO:0009446: putrescine biosynthetic process	7.01E-05
17	GO:0010136: ureide catabolic process	1.23E-04
18	GO:0051604: protein maturation	1.23E-04
19	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.83E-04
20	GO:0006145: purine nucleobase catabolic process	1.83E-04
21	GO:0051016: barbed-end actin filament capping	1.83E-04
22	GO:0006021: inositol biosynthetic process	2.48E-04
23	GO:0046855: inositol phosphate dephosphorylation	3.92E-04
24	GO:0042549: photosystem II stabilization	3.92E-04
25	GO:0048564: photosystem I assembly	6.32E-04
26	GO:0006790: sulfur compound metabolic process	1.19E-03
27	GO:0006807: nitrogen compound metabolic process	1.29E-03
28	GO:0010207: photosystem II assembly	1.40E-03
29	GO:0046854: phosphatidylinositol phosphorylation	1.50E-03
30	GO:0006418: tRNA aminoacylation for protein translation	1.85E-03
31	GO:0010431: seed maturation	1.97E-03
32	GO:0006012: galactose metabolic process	2.22E-03
33	GO:0000302: response to reactive oxygen species	3.16E-03
34	GO:0010027: thylakoid membrane organization	4.06E-03
35	GO:0042128: nitrate assimilation	4.38E-03
36	GO:0016311: dephosphorylation	4.70E-03
37	GO:0048481: plant ovule development	4.87E-03
38	GO:0048767: root hair elongation	5.04E-03
39	GO:0034599: cellular response to oxidative stress	5.91E-03
40	GO:0006508: proteolysis	9.62E-03
41	GO:0006511: ubiquitin-dependent protein catabolic process	9.68E-03
42	GO:0016569: covalent chromatin modification	1.03E-02
43	GO:0009845: seed germination	1.33E-02
44	GO:0042744: hydrogen peroxide catabolic process	1.38E-02
45	GO:0016036: cellular response to phosphate starvation	1.51E-02
46	GO:0006413: translational initiation	1.51E-02
47	GO:0008380: RNA splicing	1.79E-02
48	GO:0080167: response to karrikin	2.51E-02
49	GO:0006397: mRNA processing	3.42E-02
50	GO:0016567: protein ubiquitination	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
6	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
7	GO:1990189: peptide-serine-N-acetyltransferase activity	2.76E-05
8	GO:0004830: tryptophan-tRNA ligase activity	2.76E-05
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.76E-05
10	GO:1990190: peptide-glutamate-N-acetyltransferase activity	2.76E-05
11	GO:0052832: inositol monophosphate 3-phosphatase activity	7.01E-05
12	GO:0008934: inositol monophosphate 1-phosphatase activity	7.01E-05
13	GO:0052833: inositol monophosphate 4-phosphatase activity	7.01E-05
14	GO:0004751: ribose-5-phosphate isomerase activity	1.23E-04
15	GO:0005319: lipid transporter activity	2.48E-04
16	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.48E-04
17	GO:0004045: aminoacyl-tRNA hydrolase activity	2.48E-04
18	GO:0008233: peptidase activity	2.80E-04
19	GO:0016688: L-ascorbate peroxidase activity	3.92E-04
20	GO:0004130: cytochrome-c peroxidase activity	3.92E-04
21	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.69E-04
22	GO:0035064: methylated histone binding	6.32E-04
23	GO:0004033: aldo-keto reductase (NADP) activity	6.32E-04
24	GO:0031625: ubiquitin protein ligase binding	6.80E-04
25	GO:0005528: FK506 binding	1.73E-03
26	GO:0004176: ATP-dependent peptidase activity	1.97E-03
27	GO:0004812: aminoacyl-tRNA ligase activity	2.48E-03
28	GO:0008080: N-acetyltransferase activity	2.74E-03
29	GO:0061630: ubiquitin protein ligase activity	2.88E-03
30	GO:0008236: serine-type peptidase activity	4.70E-03
31	GO:0042393: histone binding	6.27E-03
32	GO:0051537: 2 iron, 2 sulfur cluster binding	7.20E-03
33	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.59E-03
34	GO:0003779: actin binding	1.05E-02
35	GO:0016746: transferase activity, transferring acyl groups	1.10E-02
36	GO:0003743: translation initiation factor activity	1.77E-02
37	GO:0004842: ubiquitin-protein transferase activity	2.00E-02
38	GO:0004601: peroxidase activity	2.16E-02
39	GO:0000166: nucleotide binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.85E-10
2	GO:0009535: chloroplast thylakoid membrane	2.36E-05
3	GO:0008290: F-actin capping protein complex	7.01E-05
4	GO:0031415: NatA complex	7.01E-05
5	GO:0009526: plastid envelope	2.48E-04
6	GO:0055035: plastid thylakoid membrane	3.18E-04
7	GO:0009941: chloroplast envelope	8.01E-04
8	GO:0009508: plastid chromosome	1.29E-03
9	GO:0005829: cytosol	2.81E-03
10	GO:0009523: photosystem II	3.02E-03
11	GO:0009295: nucleoid	3.75E-03
12	GO:0030529: intracellular ribonucleoprotein complex	4.06E-03
13	GO:0009534: chloroplast thylakoid	8.60E-03
14	GO:0010287: plastoglobule	1.21E-02
15	GO:0009543: chloroplast thylakoid lumen	1.26E-02
16	GO:0005623: cell	1.28E-02
17	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.30E-02
18	GO:0031969: chloroplast membrane	2.51E-02
19	GO:0022626: cytosolic ribosome	4.84E-02