co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02405

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
2	GO:0001881: receptor recycling	0.00E+00
3	GO:0006592: ornithine biosynthetic process	0.00E+00
4	GO:0019428: allantoin biosynthetic process	0.00E+00
5	GO:0006721: terpenoid metabolic process	0.00E+00
6	GO:0006511: ubiquitin-dependent protein catabolic process	3.57E-15
7	GO:0008333: endosome to lysosome transport	2.83E-06
8	GO:0043248: proteasome assembly	3.11E-05
9	GO:0042147: retrograde transport, endosome to Golgi	3.65E-05
10	GO:0051603: proteolysis involved in cellular protein catabolic process	4.13E-05
11	GO:0010265: SCF complex assembly	1.22E-04
12	GO:0006144: purine nucleobase metabolic process	1.22E-04
13	GO:0001560: regulation of cell growth by extracellular stimulus	1.22E-04
14	GO:0019628: urate catabolic process	1.22E-04
15	GO:0016487: farnesol metabolic process	1.22E-04
16	GO:0010043: response to zinc ion	2.03E-04
17	GO:0006432: phenylalanyl-tRNA aminoacylation	2.82E-04
18	GO:0030010: establishment of cell polarity	2.82E-04
19	GO:0051788: response to misfolded protein	2.82E-04
20	GO:0046417: chorismate metabolic process	4.65E-04
21	GO:0045793: positive regulation of cell size	4.65E-04
22	GO:0006760: folic acid-containing compound metabolic process	4.65E-04
23	GO:0010498: proteasomal protein catabolic process	4.65E-04
24	GO:0010255: glucose mediated signaling pathway	6.66E-04
25	GO:1901332: negative regulation of lateral root development	6.66E-04
26	GO:0051289: protein homotetramerization	6.66E-04
27	GO:0001676: long-chain fatty acid metabolic process	6.66E-04
28	GO:0032877: positive regulation of DNA endoreduplication	6.66E-04
29	GO:0006107: oxaloacetate metabolic process	6.66E-04
30	GO:0009647: skotomorphogenesis	6.66E-04
31	GO:0000413: protein peptidyl-prolyl isomerization	7.61E-04
32	GO:0015991: ATP hydrolysis coupled proton transport	7.61E-04
33	GO:0044205: 'de novo' UMP biosynthetic process	8.84E-04
34	GO:0051781: positive regulation of cell division	8.84E-04
35	GO:0006221: pyrimidine nucleotide biosynthetic process	8.84E-04
36	GO:0030163: protein catabolic process	1.13E-03
37	GO:0002238: response to molecule of fungal origin	1.37E-03
38	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.37E-03
39	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.64E-03
40	GO:0006888: ER to Golgi vesicle-mediated transport	1.67E-03
41	GO:0048528: post-embryonic root development	1.92E-03
42	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.92E-03
43	GO:0000028: ribosomal small subunit assembly	2.22E-03
44	GO:0031540: regulation of anthocyanin biosynthetic process	2.22E-03
45	GO:0006506: GPI anchor biosynthetic process	2.22E-03
46	GO:0009853: photorespiration	2.33E-03
47	GO:0009826: unidimensional cell growth	2.41E-03
48	GO:0006526: arginine biosynthetic process	2.54E-03
49	GO:0022900: electron transport chain	2.54E-03
50	GO:0015996: chlorophyll catabolic process	2.54E-03
51	GO:0009880: embryonic pattern specification	2.54E-03
52	GO:0046685: response to arsenic-containing substance	2.87E-03
53	GO:0009245: lipid A biosynthetic process	2.87E-03
54	GO:0042761: very long-chain fatty acid biosynthetic process	3.21E-03
55	GO:0000103: sulfate assimilation	3.57E-03
56	GO:0043069: negative regulation of programmed cell death	3.57E-03
57	GO:0046686: response to cadmium ion	3.71E-03
58	GO:0009073: aromatic amino acid family biosynthetic process	3.94E-03
59	GO:0010015: root morphogenesis	3.94E-03
60	GO:0009736: cytokinin-activated signaling pathway	4.02E-03
61	GO:0045454: cell redox homeostasis	4.17E-03
62	GO:0071365: cellular response to auxin stimulus	4.32E-03
63	GO:0006886: intracellular protein transport	4.34E-03
64	GO:0006108: malate metabolic process	4.71E-03
65	GO:0006829: zinc II ion transport	4.71E-03
66	GO:0006807: nitrogen compound metabolic process	4.71E-03
67	GO:0007034: vacuolar transport	5.12E-03
68	GO:0002237: response to molecule of bacterial origin	5.12E-03
69	GO:0006406: mRNA export from nucleus	6.42E-03
70	GO:0006487: protein N-linked glycosylation	6.42E-03
71	GO:0019953: sexual reproduction	6.87E-03
72	GO:0015992: proton transport	7.34E-03
73	GO:0051260: protein homooligomerization	7.34E-03
74	GO:0010431: seed maturation	7.34E-03
75	GO:0061077: chaperone-mediated protein folding	7.34E-03
76	GO:0030433: ubiquitin-dependent ERAD pathway	7.81E-03
77	GO:0019748: secondary metabolic process	7.81E-03
78	GO:0016226: iron-sulfur cluster assembly	7.81E-03
79	GO:0006012: galactose metabolic process	8.30E-03
80	GO:0009306: protein secretion	8.80E-03
81	GO:0010051: xylem and phloem pattern formation	9.83E-03
82	GO:0009735: response to cytokinin	1.01E-02
83	GO:0006662: glycerol ether metabolic process	1.04E-02
84	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.10E-02
85	GO:0048825: cotyledon development	1.15E-02
86	GO:0006623: protein targeting to vacuole	1.15E-02
87	GO:0080156: mitochondrial mRNA modification	1.20E-02
88	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.20E-02
89	GO:0010193: response to ozone	1.20E-02
90	GO:0006914: autophagy	1.38E-02
91	GO:0009828: plant-type cell wall loosening	1.38E-02
92	GO:0006904: vesicle docking involved in exocytosis	1.44E-02
93	GO:0000910: cytokinesis	1.50E-02
94	GO:0016579: protein deubiquitination	1.50E-02
95	GO:0006457: protein folding	1.57E-02
96	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.62E-02
97	GO:0006970: response to osmotic stress	1.65E-02
98	GO:0006950: response to stress	1.75E-02
99	GO:0009817: defense response to fungus, incompatible interaction	1.88E-02
100	GO:0010311: lateral root formation	1.95E-02
101	GO:0016192: vesicle-mediated transport	2.00E-02
102	GO:0006499: N-terminal protein myristoylation	2.02E-02
103	GO:0009631: cold acclimation	2.09E-02
104	GO:0048527: lateral root development	2.09E-02
105	GO:0000724: double-strand break repair via homologous recombination	2.16E-02
106	GO:0034599: cellular response to oxidative stress	2.30E-02
107	GO:0030001: metal ion transport	2.44E-02
108	GO:0006631: fatty acid metabolic process	2.52E-02
109	GO:0048364: root development	2.93E-02
110	GO:0055114: oxidation-reduction process	3.01E-02
111	GO:0008152: metabolic process	3.09E-02
112	GO:0009733: response to auxin	3.17E-02
113	GO:0006486: protein glycosylation	3.30E-02
114	GO:0006813: potassium ion transport	3.30E-02
115	GO:0015031: protein transport	3.70E-02
116	GO:0009734: auxin-activated signaling pathway	3.94E-02
117	GO:0016569: covalent chromatin modification	4.06E-02
118	GO:0009553: embryo sac development	4.15E-02
119	GO:0018105: peptidyl-serine phosphorylation	4.33E-02
120	GO:0009742: brassinosteroid mediated signaling pathway	4.42E-02
121	GO:0009555: pollen development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0047886: farnesol dehydrogenase activity	0.00E+00
2	GO:0008777: acetylornithine deacetylase activity	0.00E+00
3	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
4	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
5	GO:0050152: omega-amidase activity	0.00E+00
6	GO:0004151: dihydroorotase activity	0.00E+00
7	GO:0004298: threonine-type endopeptidase activity	3.52E-25
8	GO:0008233: peptidase activity	4.92E-16
9	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.89E-06
10	GO:0102293: pheophytinase b activity	1.22E-04
11	GO:0008794: arsenate reductase (glutaredoxin) activity	2.00E-04
12	GO:0050897: cobalt ion binding	2.03E-04
13	GO:0004106: chorismate mutase activity	2.82E-04
14	GO:0019172: glyoxalase III activity	2.82E-04
15	GO:0047746: chlorophyllase activity	2.82E-04
16	GO:0004826: phenylalanine-tRNA ligase activity	2.82E-04
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.96E-04
18	GO:0015035: protein disulfide oxidoreductase activity	7.69E-04
19	GO:0004576: oligosaccharyl transferase activity	8.84E-04
20	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	8.84E-04
21	GO:0010011: auxin binding	8.84E-04
22	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	8.84E-04
23	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.12E-03
24	GO:0031177: phosphopantetheine binding	1.37E-03
25	GO:0036402: proteasome-activating ATPase activity	1.37E-03
26	GO:0000035: acyl binding	1.64E-03
27	GO:0004602: glutathione peroxidase activity	1.64E-03
28	GO:0102391: decanoate--CoA ligase activity	1.64E-03
29	GO:0008143: poly(A) binding	1.92E-03
30	GO:0008320: protein transmembrane transporter activity	1.92E-03
31	GO:0004467: long-chain fatty acid-CoA ligase activity	1.92E-03
32	GO:0035064: methylated histone binding	2.22E-03
33	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.22E-03
34	GO:0004034: aldose 1-epimerase activity	2.22E-03
35	GO:0015078: hydrogen ion transmembrane transporter activity	2.54E-03
36	GO:0008417: fucosyltransferase activity	2.87E-03
37	GO:0045309: protein phosphorylated amino acid binding	3.21E-03
38	GO:0043621: protein self-association	3.23E-03
39	GO:0019904: protein domain specific binding	3.94E-03
40	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.94E-03
41	GO:0008559: xenobiotic-transporting ATPase activity	3.94E-03
42	GO:0000049: tRNA binding	4.32E-03
43	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.90E-03
44	GO:0004175: endopeptidase activity	5.12E-03
45	GO:0017025: TBP-class protein binding	5.54E-03
46	GO:0009055: electron carrier activity	5.95E-03
47	GO:0005528: FK506 binding	6.42E-03
48	GO:0003714: transcription corepressor activity	6.42E-03
49	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.34E-03
50	GO:0008565: protein transporter activity	8.54E-03
51	GO:0047134: protein-disulfide reductase activity	9.31E-03
52	GO:0005249: voltage-gated potassium channel activity	9.83E-03
53	GO:0046873: metal ion transmembrane transporter activity	1.04E-02
54	GO:0050662: coenzyme binding	1.09E-02
55	GO:0004791: thioredoxin-disulfide reductase activity	1.09E-02
56	GO:0016853: isomerase activity	1.09E-02
57	GO:0004872: receptor activity	1.15E-02
58	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.20E-02
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.32E-02
60	GO:0008237: metallopeptidase activity	1.44E-02
61	GO:0016597: amino acid binding	1.50E-02
62	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.69E-02
63	GO:0004683: calmodulin-dependent protein kinase activity	1.75E-02
64	GO:0005507: copper ion binding	1.77E-02
65	GO:0005516: calmodulin binding	1.89E-02
66	GO:0003697: single-stranded DNA binding	2.23E-02
67	GO:0042393: histone binding	2.44E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	2.44E-02
69	GO:0004722: protein serine/threonine phosphatase activity	2.50E-02
70	GO:0004185: serine-type carboxypeptidase activity	2.67E-02
71	GO:0003924: GTPase activity	2.81E-02
72	GO:0051537: 2 iron, 2 sulfur cluster binding	2.82E-02
73	GO:0022857: transmembrane transporter activity	4.06E-02
74	GO:0016887: ATPase activity	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0000502: proteasome complex	8.67E-29
3	GO:0005839: proteasome core complex	3.52E-25
4	GO:0019773: proteasome core complex, alpha-subunit complex	2.00E-16
5	GO:0005829: cytosol	2.33E-10
6	GO:0005747: mitochondrial respiratory chain complex I	9.69E-08
7	GO:0030904: retromer complex	1.87E-07
8	GO:0005771: multivesicular body	3.11E-05
9	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	1.22E-04
10	GO:0019774: proteasome core complex, beta-subunit complex	1.22E-04
11	GO:0008541: proteasome regulatory particle, lid subcomplex	2.00E-04
12	GO:0031902: late endosome membrane	2.90E-04
13	GO:0005773: vacuole	3.55E-04
14	GO:0005774: vacuolar membrane	4.10E-04
15	GO:0045271: respiratory chain complex I	4.61E-04
16	GO:0070469: respiratory chain	4.61E-04
17	GO:0046861: glyoxysomal membrane	4.65E-04
18	GO:0005794: Golgi apparatus	4.78E-04
19	GO:0033180: proton-transporting V-type ATPase, V1 domain	6.66E-04
20	GO:0008076: voltage-gated potassium channel complex	6.66E-04
21	GO:0005783: endoplasmic reticulum	7.41E-04
22	GO:0033179: proton-transporting V-type ATPase, V0 domain	8.84E-04
23	GO:0005789: endoplasmic reticulum membrane	9.29E-04
24	GO:0008250: oligosaccharyltransferase complex	1.12E-03
25	GO:0032580: Golgi cisterna membrane	1.20E-03
26	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.37E-03
27	GO:0032588: trans-Golgi network membrane	1.37E-03
28	GO:0009507: chloroplast	1.50E-03
29	GO:0031597: cytosolic proteasome complex	1.64E-03
30	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.92E-03
31	GO:0031595: nuclear proteasome complex	1.92E-03
32	GO:0000421: autophagosome membrane	2.22E-03
33	GO:0009514: glyoxysome	2.54E-03
34	GO:0005763: mitochondrial small ribosomal subunit	2.87E-03
35	GO:0008540: proteasome regulatory particle, base subcomplex	3.21E-03
36	GO:0031966: mitochondrial membrane	3.75E-03
37	GO:0005753: mitochondrial proton-transporting ATP synthase complex	5.54E-03
38	GO:0016020: membrane	6.32E-03
39	GO:0005737: cytoplasm	6.78E-03
40	GO:0031410: cytoplasmic vesicle	7.81E-03
41	GO:0022626: cytosolic ribosome	1.07E-02
42	GO:0005788: endoplasmic reticulum lumen	1.62E-02
43	GO:0031969: chloroplast membrane	1.90E-02
44	GO:0000325: plant-type vacuole	2.09E-02
45	GO:0005819: spindle	2.37E-02
46	GO:0005768: endosome	2.41E-02
47	GO:0043231: intracellular membrane-bounded organelle	3.09E-02
48	GO:0005635: nuclear envelope	3.46E-02
49	GO:0016607: nuclear speck	3.80E-02
50	GO:0005834: heterotrimeric G-protein complex	3.89E-02
51	GO:0000139: Golgi membrane	4.00E-02
52	GO:0005732: small nucleolar ribonucleoprotein complex	4.51E-02
53	GO:0005634: nucleus	4.65E-02